Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4673

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
5,538,217	+		Psyr_4671	0.88	+0.1
5,538,218	-		Psyr_4671	0.88	-1.2
5,538,326	+				+0.9
5,538,327	-				+0.5
5,538,400	+				-0.2
5,538,400	+				+0.9
5,538,400	+				-1.0
5,538,401	-				-1.0
5,538,401	-				+0.9
5,538,401	-				-0.8
5,538,401	-				-0.9
5,538,403	+				+0.9
5,538,403	+				+0.8
5,538,403	+				+0.1
5,538,403	+				-1.6
5,538,403	+				-2.2
5,538,403	+				+0.1
5,538,404	-				-0.6
5,538,404	-				-1.2
5,538,412	+				-0.9
5,538,412	+				-0.0
5,538,412	+				+1.5
5,538,412	+				+0.5
5,538,412	+				+0.3
5,538,412	+				+1.8
5,538,412	+				-1.1
5,538,412	+				+0.8
5,538,412	+				+0.6
5,538,412	+				+0.2
5,538,412	+				+0.2
5,538,413	-		Psyr_4672	0.10	-0.5
5,538,413	-		Psyr_4672	0.10	-2.6
5,538,413	-		Psyr_4672	0.10	+4.4
5,538,413	-		Psyr_4672	0.10	+0.6
5,538,413	-		Psyr_4672	0.10	-2.7
5,538,413	-		Psyr_4672	0.10	+0.7
5,538,413	-		Psyr_4672	0.10	+2.5
5,538,436	+		Psyr_4672	0.13	+1.4
5,538,436	+		Psyr_4672	0.13	-2.3
5,538,436	+		Psyr_4672	0.13	-0.9
5,538,436	+		Psyr_4672	0.13	-1.2
5,538,437	-		Psyr_4672	0.13	+1.1
5,538,437	-		Psyr_4672	0.13	-0.9
5,538,437	-		Psyr_4672	0.13	+0.9
5,538,490	+		Psyr_4672	0.20	-0.4
5,538,490	+		Psyr_4672	0.20	+0.8
5,538,490	+		Psyr_4672	0.20	-1.8
5,538,490	+		Psyr_4672	0.20	-0.8
5,538,491	-		Psyr_4672	0.20	-1.1
5,538,491	-		Psyr_4672	0.20	-0.4
5,538,491	-		Psyr_4672	0.20	+0.2
5,538,491	-		Psyr_4672	0.20	+0.5
5,538,491	-		Psyr_4672	0.20	-0.0
5,538,493	+		Psyr_4672	0.21	-0.1
5,538,493	+		Psyr_4672	0.21	+0.6
5,538,494	-		Psyr_4672	0.21	-0.1
5,538,719	-		Psyr_4672	0.51	-2.0
5,538,853	+		Psyr_4672	0.68	+2.2
5,538,853	+		Psyr_4672	0.68	+0.6
5,538,859	+		Psyr_4672	0.69	-0.0
5,538,860	-		Psyr_4672	0.69	+0.7
5,538,860	-		Psyr_4672	0.69	+1.2
5,538,860	-		Psyr_4672	0.69	+0.8
5,538,860	-		Psyr_4672	0.69	+1.1
5,538,860	-		Psyr_4672	0.69	-0.7
5,538,896	+		Psyr_4672	0.74	+0.2
5,538,896	+		Psyr_4672	0.74	+0.1
5,538,896	+		Psyr_4672	0.74	+0.2
5,538,896	+		Psyr_4672	0.74	-0.5
5,538,896	+		Psyr_4672	0.74	-1.2
5,538,896	+		Psyr_4672	0.74	-0.4
5,538,896	+		Psyr_4672	0.74	+2.4
5,538,897	-		Psyr_4672	0.74	-1.2
5,538,897	-		Psyr_4672	0.74	+1.1
5,538,897	-		Psyr_4672	0.74	+1.7
5,538,897	-		Psyr_4672	0.74	+0.8
5,538,920	+		Psyr_4672	0.77	-3.2
5,538,921	-		Psyr_4672	0.77	+0.4
5,538,928	+		Psyr_4672	0.78	-3.4
5,538,928	+		Psyr_4672	0.78	+0.4
5,538,928	+		Psyr_4672	0.78	-0.5
5,538,928	+		Psyr_4672	0.78	+1.1
5,538,928	+		Psyr_4672	0.78	-0.6
5,538,928	+		Psyr_4672	0.78	+1.3
5,538,928	+		Psyr_4672	0.78	-0.4
5,538,929	-		Psyr_4672	0.78	-0.0
5,538,929	-		Psyr_4672	0.78	-2.4
5,538,929	-		Psyr_4672	0.78	+3.1
5,538,929	-		Psyr_4672	0.78	-1.2
5,538,929	-		Psyr_4672	0.78	+1.7
5,538,929	-		Psyr_4672	0.78	-0.8
5,538,929	-		Psyr_4672	0.78	-0.0
5,538,929	-		Psyr_4672	0.78	-1.8
5,538,933	+		Psyr_4672	0.79	+1.0
5,538,933	+		Psyr_4672	0.79	+1.3
5,538,933	+		Psyr_4672	0.79	-0.0
5,538,933	+		Psyr_4672	0.79	-1.6
5,538,933	+		Psyr_4672	0.79	-1.2
5,538,933	+		Psyr_4672	0.79	-2.4
5,538,934	-		Psyr_4672	0.79	+0.8
5,538,934	-		Psyr_4672	0.79	-0.4
5,538,934	-		Psyr_4672	0.79	-0.1
5,538,934	-		Psyr_4672	0.79	+1.8
5,538,934	-		Psyr_4672	0.79	-0.2
5,538,934	-		Psyr_4672	0.79	+3.0
5,538,934	-		Psyr_4672	0.79	+1.1
5,538,934	-		Psyr_4672	0.79	+0.6
5,538,934	-		Psyr_4672	0.79	+1.5
5,538,934	-		Psyr_4672	0.79	-1.2
5,538,934	-		Psyr_4672	0.79	-0.1
5,538,934	-		Psyr_4672	0.79	+0.1
5,538,937	+		Psyr_4672	0.79	-2.8
5,538,937	+		Psyr_4672	0.79	-1.9
5,538,937	+		Psyr_4672	0.79	+0.5
5,538,937	+		Psyr_4672	0.79	-2.7
5,538,937	+		Psyr_4672	0.79	-0.6
5,538,938	-		Psyr_4672	0.79	+0.3
5,538,938	-		Psyr_4672	0.79	-1.2
5,538,938	-		Psyr_4672	0.79	+1.2
5,538,955	-		Psyr_4672	0.82	-0.0
5,538,955	-		Psyr_4672	0.82	+2.7
5,538,955	-		Psyr_4672	0.82	-0.0
5,538,955	-		Psyr_4672	0.82	+1.2
5,538,955	-		Psyr_4672	0.82	+0.9
5,539,021	+				+1.2
5,539,074	+				-2.2
5,539,088	+				-0.4
5,539,089	-				+0.0
5,539,089	-				+0.6
5,539,089	-				-2.5
5,539,089	-				+0.8
5,539,185	+		Psyr_4673	0.34	-1.2
5,539,186	-		Psyr_4673	0.34	-0.9
5,539,376	+				+3.0
5,539,376	+				+0.2
5,539,376	+				-3.3
5,539,376	+				-0.4
5,539,376	+				+0.8
5,539,376	+				+1.8
5,539,377	-				-1.0
5,539,377	-				+0.8
5,539,377	-				+0.9
5,539,377	-				+0.6
5,539,377	-				+0.2
5,539,377	-				-1.9
5,539,377	-				+2.6
5,539,377	-				+2.3
5,539,377	-				-2.9
5,539,377	-				-1.2
5,539,377	-				-0.6
5,539,377	-				-1.6
5,539,399	+				-2.2
5,539,400	-				+0.4
5,539,400	-				+0.0
5,539,456	+				+0.3
5,539,456	+				+1.3
5,539,457	-				-1.4
5,539,457	-				+0.5
5,539,457	-				-1.8
5,539,481	-				+2.0
5,539,660	+		Psyr_4674	0.25	-0.8
5,539,660	+		Psyr_4674	0.25	+1.8
5,539,660	+		Psyr_4674	0.25	-0.1
5,539,966	+		Psyr_4674	0.51	+0.4
5,539,966	+		Psyr_4674	0.51	+0.0
5,539,967	-		Psyr_4674	0.51	+0.6
5,539,967	-		Psyr_4674	0.51	+0.1
5,539,967	-		Psyr_4674	0.51	-0.4
5,540,107	+		Psyr_4674	0.63	-1.1
5,540,107	+		Psyr_4674	0.63	-0.8
5,540,108	-		Psyr_4674	0.63	-0.7
5,540,108	-		Psyr_4674	0.63	+0.9
5,540,111	-		Psyr_4674	0.64	-0.8
5,540,151	+		Psyr_4674	0.67	+0.6
5,540,152	-		Psyr_4674	0.67	+0.5
5,540,261	-		Psyr_4674	0.76	+0.1