Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4603 and Psyr_4604 are separated by 154 nucleotides Psyr_4604 and Psyr_4605 are separated by 97 nucleotides Psyr_4605 and Psyr_4606 are separated by 105 nucleotides
Psyr_4603: Psyr_4603 - phage repressor protein, Serine peptidase, MEROPS family S24, at 5,460,691 to 5,461,380
_4603
Psyr_4604: Psyr_4604 - hypothetical protein, at 5,461,535 to 5,461,783
_4604
Psyr_4605: Psyr_4605 - transcriptional regulator PrtN, putative, at 5,461,881 to 5,462,147
_4605
Psyr_4606: Psyr_4606 - Outer membrane autotransporter barrel, at 5,462,253 to 5,464,175
_4606
Position (kb) 5461
5462
5463 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5461.473 kb on + strand at 5461.473 kb on + strand at 5461.473 kb on + strand at 5461.473 kb on + strand at 5461.474 kb on - strand at 5461.474 kb on - strand at 5461.474 kb on - strand at 5461.474 kb on - strand at 5461.574 kb on + strand, within Psyr_4604 at 5461.574 kb on + strand, within Psyr_4604 at 5461.574 kb on + strand, within Psyr_4604 at 5461.575 kb on - strand, within Psyr_4604 at 5461.575 kb on - strand, within Psyr_4604 at 5461.606 kb on + strand, within Psyr_4604 at 5461.606 kb on + strand, within Psyr_4604 at 5461.607 kb on - strand, within Psyr_4604 at 5461.767 kb on - strand at 5461.840 kb on + strand at 5461.846 kb on - strand at 5461.916 kb on - strand, within Psyr_4605 at 5461.916 kb on - strand, within Psyr_4605 at 5461.916 kb on - strand, within Psyr_4605 at 5462.092 kb on - strand, within Psyr_4605 at 5462.112 kb on + strand, within Psyr_4605 at 5462.112 kb on + strand, within Psyr_4605 at 5462.112 kb on + strand, within Psyr_4605 at 5462.112 kb on + strand, within Psyr_4605 at 5462.112 kb on + strand, within Psyr_4605 at 5462.113 kb on - strand, within Psyr_4605 at 5462.113 kb on - strand, within Psyr_4605 at 5462.113 kb on - strand, within Psyr_4605 at 5462.113 kb on - strand, within Psyr_4605 at 5462.213 kb on + strand at 5462.213 kb on + strand at 5462.213 kb on + strand at 5462.213 kb on + strand at 5462.214 kb on - strand at 5462.214 kb on - strand at 5462.408 kb on + strand at 5462.408 kb on + strand at 5462.577 kb on - strand, within Psyr_4606 at 5462.686 kb on - strand, within Psyr_4606 at 5462.686 kb on - strand, within Psyr_4606 at 5462.727 kb on + strand, within Psyr_4606 at 5462.728 kb on - strand, within Psyr_4606 at 5462.728 kb on - strand, within Psyr_4606 at 5462.728 kb on - strand, within Psyr_4606 at 5462.730 kb on + strand, within Psyr_4606 at 5462.850 kb on + strand, within Psyr_4606 at 5462.850 kb on + strand, within Psyr_4606 at 5462.851 kb on - strand, within Psyr_4606 at 5462.882 kb on + strand, within Psyr_4606 at 5462.883 kb on - strand, within Psyr_4606 at 5462.957 kb on - strand, within Psyr_4606 at 5462.957 kb on - strand, within Psyr_4606 at 5462.957 kb on - strand, within Psyr_4606 at 5463.095 kb on + strand, within Psyr_4606 at 5463.096 kb on - strand, within Psyr_4606 at 5463.096 kb on - strand, within Psyr_4606 at 5463.096 kb on - strand, within Psyr_4606 at 5463.096 kb on - strand, within Psyr_4606
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 5,461,473 + +1.3 5,461,473 + -1.9 5,461,473 + +0.6 5,461,473 + -0.9 5,461,474 - -0.2 5,461,474 - -2.0 5,461,474 - -3.1 5,461,474 - -0.8 5,461,574 + Psyr_4604 0.16 -1.1 5,461,574 + Psyr_4604 0.16 +0.9 5,461,574 + Psyr_4604 0.16 +1.5 5,461,575 - Psyr_4604 0.16 -1.1 5,461,575 - Psyr_4604 0.16 -1.1 5,461,606 + Psyr_4604 0.29 -0.5 5,461,606 + Psyr_4604 0.29 -2.6 5,461,607 - Psyr_4604 0.29 +2.0 5,461,767 - +0.6 5,461,840 + -0.3 5,461,846 - +0.1 5,461,916 - Psyr_4605 0.13 -1.9 5,461,916 - Psyr_4605 0.13 -1.8 5,461,916 - Psyr_4605 0.13 -2.9 5,462,092 - Psyr_4605 0.79 +1.9 5,462,112 + Psyr_4605 0.87 +0.1 5,462,112 + Psyr_4605 0.87 +0.1 5,462,112 + Psyr_4605 0.87 -1.0 5,462,112 + Psyr_4605 0.87 -1.7 5,462,112 + Psyr_4605 0.87 -2.1 5,462,113 - Psyr_4605 0.87 +0.3 5,462,113 - Psyr_4605 0.87 -1.0 5,462,113 - Psyr_4605 0.87 -0.7 5,462,113 - Psyr_4605 0.87 -1.0 5,462,213 + +2.0 5,462,213 + +1.0 5,462,213 + +0.0 5,462,213 + +0.3 5,462,214 - +1.1 5,462,214 - +0.9 5,462,408 + -1.4 5,462,408 + -2.6 5,462,577 - Psyr_4606 0.17 +2.3 5,462,686 - Psyr_4606 0.23 +1.5 5,462,686 - Psyr_4606 0.23 -0.8 5,462,727 + Psyr_4606 0.25 +1.4 5,462,728 - Psyr_4606 0.25 -1.9 5,462,728 - Psyr_4606 0.25 -0.3 5,462,728 - Psyr_4606 0.25 -2.5 5,462,730 + Psyr_4606 0.25 -1.4 5,462,850 + Psyr_4606 0.31 -0.4 5,462,850 + Psyr_4606 0.31 +0.1 5,462,851 - Psyr_4606 0.31 +0.3 5,462,882 + Psyr_4606 0.33 +2.4 5,462,883 - Psyr_4606 0.33 -0.9 5,462,957 - Psyr_4606 0.37 -2.6 5,462,957 - Psyr_4606 0.37 -0.8 5,462,957 - Psyr_4606 0.37 +1.1 5,463,095 + Psyr_4606 0.44 -0.5 5,463,096 - Psyr_4606 0.44 -0.4 5,463,096 - Psyr_4606 0.44 -1.6 5,463,096 - Psyr_4606 0.44 +1.1 5,463,096 - Psyr_4606 0.44 -2.0
Or see this region's nucleotide sequence