Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3839

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
4,573,595	+				+0.7
4,573,595	+				-2.1
4,573,595	+				+0.1
4,573,595	+				-0.3
4,573,595	+				+2.0
4,573,595	+				-0.3
4,573,596	-				+0.7
4,573,596	-				+0.6
4,573,596	-				-2.5
4,573,596	-				-0.8
4,573,596	-				+1.7
4,573,596	-				+0.5
4,573,596	-				-1.4
4,573,596	-				+0.6
4,573,619	+				-2.8
4,573,620	-				+0.9
4,573,620	-				-1.2
4,573,637	+		Psyr_3837	0.18	-2.4
4,573,637	+		Psyr_3837	0.18	+0.9
4,573,638	-		Psyr_3837	0.19	+0.2
4,573,705	-		Psyr_3837	0.65	-1.8
4,573,755	+				-2.8
4,573,755	+				+0.1
4,573,755	+				-0.1
4,573,755	+				-1.9
4,573,756	-				+0.4
4,573,756	-				-2.6
4,573,756	-				+0.8
4,573,761	+				-1.9
4,573,762	-				-0.6
4,573,762	-				+2.9
4,573,762	-				-0.6
4,573,762	-				+1.3
4,573,780	+				-2.8
4,573,780	+				-2.1
4,573,783	+				+1.6
4,573,783	+				+1.6
4,573,783	+				-1.2
4,573,784	-				+0.7
4,573,784	-				-3.6
4,573,784	-				+1.4
4,574,588	-				-1.1
4,574,603	+				-0.2
4,574,603	+				+1.6
4,574,603	+				+1.4
4,574,603	+				-1.6
4,574,603	+				+0.4
4,574,603	+				-1.8
4,574,603	+				+0.8
4,574,603	+				+1.0
4,574,603	+				-1.9
4,574,603	+				+0.9
4,574,604	-				+0.6
4,574,604	-				+0.0
4,574,604	-				-0.4
4,574,604	-				+3.1
4,574,695	+				+2.0
4,574,696	-				-1.0
4,574,696	-				-1.3
4,574,696	-				+1.3
4,574,696	-				-0.8
4,574,804	-		Psyr_3839	0.14	-2.7
4,574,830	-		Psyr_3839	0.15	-0.1
4,574,830	-		Psyr_3839	0.15	-1.1
4,574,898	+		Psyr_3839	0.19	+0.1
4,574,898	+		Psyr_3839	0.19	+0.2
4,574,898	+		Psyr_3839	0.19	+1.2
4,574,899	-		Psyr_3839	0.19	+1.2
4,574,899	-		Psyr_3839	0.19	+2.2
4,575,076	+		Psyr_3839	0.30	-1.4
4,575,076	+		Psyr_3839	0.30	+1.9
4,575,077	-		Psyr_3839	0.30	+1.8
4,575,242	-		Psyr_3839	0.40	-0.7
4,575,395	+		Psyr_3839	0.50	-0.9
4,575,395	+		Psyr_3839	0.50	-2.1
4,575,395	+		Psyr_3839	0.50	+0.1
4,575,395	+		Psyr_3839	0.50	-2.5
4,575,395	+		Psyr_3839	0.50	-1.6
4,575,395	+		Psyr_3839	0.50	+1.1
4,575,396	-		Psyr_3839	0.50	-0.5
4,575,396	-		Psyr_3839	0.50	-1.4
4,575,396	-		Psyr_3839	0.50	+1.3
4,575,396	-		Psyr_3839	0.50	+1.1
4,575,396	-		Psyr_3839	0.50	+1.2
4,575,396	-		Psyr_3839	0.50	+2.6
4,575,396	-		Psyr_3839	0.50	+0.5
4,575,396	-		Psyr_3839	0.50	-0.4
4,575,396	-		Psyr_3839	0.50	+1.2
4,575,396	-		Psyr_3839	0.50	+0.6
4,575,396	-		Psyr_3839	0.50	-1.4
4,575,396	-		Psyr_3839	0.50	+0.3
4,575,396	-		Psyr_3839	0.50	-2.2
4,575,527	+		Psyr_3839	0.58	-1.8
4,575,527	+		Psyr_3839	0.58	-1.4
4,575,527	+		Psyr_3839	0.58	+0.9
4,575,527	+		Psyr_3839	0.58	-1.0
4,575,528	-		Psyr_3839	0.58	+0.4
4,575,528	-		Psyr_3839	0.58	+0.2
4,575,528	-		Psyr_3839	0.58	+0.3
4,575,528	-		Psyr_3839	0.58	-0.9
4,575,528	-		Psyr_3839	0.58	-0.9
4,575,528	-		Psyr_3839	0.58	-0.2
4,575,665	+		Psyr_3839	0.66	-0.2
4,575,665	+		Psyr_3839	0.66	+1.9
4,575,665	+		Psyr_3839	0.66	-0.7
4,575,666	-		Psyr_3839	0.66	-0.8
4,575,666	-		Psyr_3839	0.66	-3.5
4,575,666	-		Psyr_3839	0.66	-2.9
4,575,666	-		Psyr_3839	0.66	+0.4
4,575,713	+		Psyr_3839	0.69	-0.5
4,575,713	+		Psyr_3839	0.69	-1.9
4,575,713	+		Psyr_3839	0.69	-1.2
4,575,713	+		Psyr_3839	0.69	+2.0
4,575,713	+		Psyr_3839	0.69	-0.6
4,575,713	+		Psyr_3839	0.69	+0.1
4,575,713	+		Psyr_3839	0.69	-1.4
4,575,714	-		Psyr_3839	0.69	+1.1
4,575,714	-		Psyr_3839	0.69	+0.4
4,575,714	-		Psyr_3839	0.69	+0.5
4,575,714	-		Psyr_3839	0.69	-1.2
4,575,714	-		Psyr_3839	0.69	+0.7
4,575,714	-		Psyr_3839	0.69	+0.0
4,575,714	-		Psyr_3839	0.69	-0.6
4,575,714	-		Psyr_3839	0.69	+1.9
4,575,714	-		Psyr_3839	0.69	-2.0
4,575,755	-		Psyr_3839	0.72	-0.2
4,575,755	-		Psyr_3839	0.72	-0.9
4,575,824	+		Psyr_3839	0.76	+0.8
4,575,824	+		Psyr_3839	0.76	-0.4
4,575,825	-		Psyr_3839	0.76	-0.4
4,575,825	-		Psyr_3839	0.76	+1.7
4,575,995	+		Psyr_3839	0.87	+0.5
4,575,995	+		Psyr_3839	0.87	-0.2
4,575,995	+		Psyr_3839	0.87	-1.2
4,575,995	+		Psyr_3839	0.87	+1.3
4,575,995	+		Psyr_3839	0.87	+0.3
4,575,995	+		Psyr_3839	0.87	+0.9
4,575,995	+		Psyr_3839	0.87	-2.0
4,575,996	-		Psyr_3839	0.87	-3.5
4,575,996	-		Psyr_3839	0.87	-1.0
4,575,996	-		Psyr_3839	0.87	-0.2
4,576,055	+				-0.3
4,576,056	-				-1.4
4,576,137	-				-3.8
4,576,137	-				+0.2
4,576,175	+				-1.7
4,576,350	-				+1.1
4,576,393	+				-1.4
4,576,444	-				-0.7
4,576,504	+		Psyr_3840	0.45	+1.2
4,576,504	+		Psyr_3840	0.45	+2.0
4,576,504	+		Psyr_3840	0.45	+1.4
4,576,505	-		Psyr_3840	0.46	+1.2
4,576,505	-		Psyr_3840	0.46	+0.3
4,576,505	-		Psyr_3840	0.46	+1.6
4,576,505	-		Psyr_3840	0.46	-0.6
4,576,505	-		Psyr_3840	0.46	+1.7
4,576,505	-		Psyr_3840	0.46	-0.7
4,576,540	-		Psyr_3840	0.68	+1.2
4,576,628	-				+1.4
4,576,891	+		Psyr_3841	0.58	+0.6
4,576,892	-		Psyr_3841	0.59	+0.0
4,576,892	-		Psyr_3841	0.59	-0.9
4,577,020	+				+1.3
4,577,020	+				+2.8
4,577,020	+				+0.2
4,577,020	+				-2.3
4,577,020	+				-0.3
4,577,020	+				-0.3
4,577,020	+				-1.0
4,577,020	+				+1.5
4,577,020	+				-0.6
4,577,020	+				-2.7
4,577,021	-				-0.9
4,577,021	-				+1.3
4,577,021	-				+0.1
4,577,021	-				+0.5
4,577,021	-				-2.8
4,577,021	-				+1.4
4,577,021	-				+2.4
4,577,021	-				+0.9
4,577,038	+				-1.8
4,577,039	-				-0.6
4,577,101	+				-2.2
4,577,109	+				+0.7
4,577,109	+				-2.8
4,577,110	-				+1.5
4,577,111	+				+1.6
4,577,111	+				-1.3
4,577,111	+				-0.3
4,577,112	-				-1.7
4,577,112	-				+0.4
4,577,112	-				-2.1
4,577,141	+				+0.0
4,577,141	+				-0.4
4,577,141	+				-2.2
4,577,142	-				-1.6
4,577,142	-				-0.2
4,577,142	-				+2.3