Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3494

Experiment: apoplastic; Pepper

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3493 and Psyr_3494 are separated by 235 nucleotidesPsyr_3494 and Psyr_3495 are separated by 63 nucleotidesPsyr_3495 and Psyr_3496 overlap by 4 nucleotides Psyr_3493: Psyr_3493 - conserved hypothetical protein, at 4,162,302 to 4,163,213 _3493 Psyr_3494: Psyr_3494 - hypothetical protein, at 4,163,449 to 4,164,258 _3494 Psyr_3495: Psyr_3495 - ATP-binding region, ATPase-like protein, at 4,164,322 to 4,165,017 _3495 Psyr_3496: Psyr_3496 - TPR repeat:Response regulator receiver:Response regulator receiver:Response regulator receiver, at 4,165,014 to 4,166,615 _3496 Position (kb) 4163 4164 4165Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 4162.491 kb on + strand, within Psyr_3493at 4162.491 kb on + strand, within Psyr_3493at 4162.492 kb on - strand, within Psyr_3493at 4162.492 kb on - strand, within Psyr_3493at 4162.492 kb on - strand, within Psyr_3493at 4162.492 kb on - strand, within Psyr_3493at 4162.492 kb on - strand, within Psyr_3493at 4162.492 kb on - strand, within Psyr_3493at 4162.666 kb on + strand, within Psyr_3493at 4162.666 kb on + strand, within Psyr_3493at 4162.667 kb on - strand, within Psyr_3493at 4162.696 kb on + strand, within Psyr_3493at 4162.696 kb on + strand, within Psyr_3493at 4162.696 kb on + strand, within Psyr_3493at 4162.696 kb on + strand, within Psyr_3493at 4162.696 kb on + strand, within Psyr_3493at 4162.697 kb on - strand, within Psyr_3493at 4162.697 kb on - strand, within Psyr_3493at 4162.697 kb on - strand, within Psyr_3493at 4162.697 kb on - strand, within Psyr_3493at 4162.697 kb on - strand, within Psyr_3493at 4162.697 kb on - strand, within Psyr_3493at 4162.878 kb on + strand, within Psyr_3493at 4162.966 kb on + strand, within Psyr_3493at 4162.966 kb on + strand, within Psyr_3493at 4162.967 kb on - strand, within Psyr_3493at 4163.062 kb on + strand, within Psyr_3493at 4163.062 kb on + strand, within Psyr_3493at 4163.062 kb on + strand, within Psyr_3493at 4163.062 kb on + strand, within Psyr_3493at 4163.062 kb on + strand, within Psyr_3493at 4163.062 kb on + strand, within Psyr_3493at 4163.063 kb on - strand, within Psyr_3493at 4163.063 kb on - strand, within Psyr_3493at 4163.063 kb on - strand, within Psyr_3493at 4163.063 kb on - strand, within Psyr_3493at 4163.071 kb on + strand, within Psyr_3493at 4163.071 kb on + strand, within Psyr_3493at 4163.072 kb on - strand, within Psyr_3493at 4163.072 kb on - strand, within Psyr_3493at 4163.175 kb on + strandat 4163.175 kb on + strandat 4163.176 kb on - strandat 4163.176 kb on - strandat 4163.195 kb on - strandat 4163.201 kb on + strandat 4163.202 kb on - strandat 4163.205 kb on + strandat 4163.206 kb on - strandat 4163.206 kb on - strandat 4163.285 kb on - strandat 4163.331 kb on + strandat 4163.331 kb on + strandat 4163.348 kb on + strandat 4163.348 kb on + strandat 4163.348 kb on + strandat 4163.348 kb on + strandat 4163.349 kb on - strandat 4163.349 kb on - strandat 4163.349 kb on - strandat 4163.352 kb on + strandat 4163.352 kb on + strandat 4163.352 kb on + strandat 4163.352 kb on + strandat 4163.352 kb on + strandat 4163.352 kb on + strandat 4163.352 kb on + strandat 4163.352 kb on + strandat 4163.352 kb on + strandat 4163.352 kb on + strandat 4163.352 kb on + strandat 4163.352 kb on + strandat 4163.352 kb on + strandat 4163.352 kb on + strandat 4163.352 kb on + strandat 4163.352 kb on + strandat 4163.352 kb on + strandat 4163.352 kb on + strandat 4163.352 kb on + strandat 4163.353 kb on - strandat 4163.353 kb on - strandat 4163.353 kb on - strandat 4163.353 kb on - strandat 4163.353 kb on - strandat 4163.353 kb on - strandat 4163.353 kb on - strandat 4163.353 kb on - strandat 4163.353 kb on - strandat 4163.353 kb on - strandat 4163.363 kb on - strandat 4163.488 kb on + strandat 4163.488 kb on + strandat 4163.488 kb on + strandat 4163.488 kb on + strandat 4163.488 kb on + strandat 4163.489 kb on - strandat 4163.489 kb on - strandat 4163.489 kb on - strandat 4163.489 kb on - strandat 4163.489 kb on - strandat 4163.489 kb on - strandat 4163.489 kb on - strandat 4163.519 kb on - strandat 4163.579 kb on - strand, within Psyr_3494at 4163.596 kb on + strand, within Psyr_3494at 4163.596 kb on + strand, within Psyr_3494at 4163.596 kb on + strand, within Psyr_3494at 4163.719 kb on + strand, within Psyr_3494at 4163.719 kb on + strand, within Psyr_3494at 4163.719 kb on + strand, within Psyr_3494at 4163.719 kb on + strand, within Psyr_3494at 4163.719 kb on + strand, within Psyr_3494at 4163.719 kb on + strand, within Psyr_3494at 4163.719 kb on + strand, within Psyr_3494at 4163.719 kb on + strand, within Psyr_3494at 4163.719 kb on + strand, within Psyr_3494at 4163.719 kb on + strand, within Psyr_3494at 4163.719 kb on + strand, within Psyr_3494at 4163.719 kb on + strand, within Psyr_3494at 4163.720 kb on - strand, within Psyr_3494at 4163.720 kb on - strand, within Psyr_3494at 4163.720 kb on - strand, within Psyr_3494at 4163.720 kb on - strand, within Psyr_3494at 4163.720 kb on - strand, within Psyr_3494at 4163.720 kb on - strand, within Psyr_3494at 4163.720 kb on - strand, within Psyr_3494at 4163.720 kb on - strand, within Psyr_3494at 4163.720 kb on - strand, within Psyr_3494at 4163.720 kb on - strand, within Psyr_3494at 4163.720 kb on - strand, within Psyr_3494at 4163.720 kb on - strand, within Psyr_3494at 4163.720 kb on - strand, within Psyr_3494at 4163.720 kb on - strand, within Psyr_3494at 4163.720 kb on - strand, within Psyr_3494at 4163.720 kb on - strand, within Psyr_3494at 4163.720 kb on - strand, within Psyr_3494at 4163.720 kb on - strand, within Psyr_3494at 4163.720 kb on - strand, within Psyr_3494at 4163.720 kb on - strand, within Psyr_3494at 4163.720 kb on - strand, within Psyr_3494at 4163.720 kb on - strand, within Psyr_3494at 4163.724 kb on - strand, within Psyr_3494at 4163.724 kb on - strand, within Psyr_3494at 4163.738 kb on + strand, within Psyr_3494at 4163.738 kb on + strand, within Psyr_3494at 4163.738 kb on + strand, within Psyr_3494at 4163.739 kb on - strand, within Psyr_3494at 4163.749 kb on + strand, within Psyr_3494at 4163.749 kb on + strand, within Psyr_3494at 4163.749 kb on + strand, within Psyr_3494at 4163.749 kb on + strand, within Psyr_3494at 4163.750 kb on - strand, within Psyr_3494at 4163.791 kb on + strand, within Psyr_3494at 4163.792 kb on - strand, within Psyr_3494at 4163.845 kb on + strand, within Psyr_3494at 4163.845 kb on + strand, within Psyr_3494at 4163.846 kb on - strand, within Psyr_3494at 4163.846 kb on - strand, within Psyr_3494at 4163.846 kb on - strand, within Psyr_3494at 4163.884 kb on + strand, within Psyr_3494at 4163.885 kb on - strand, within Psyr_3494at 4163.911 kb on + strand, within Psyr_3494at 4163.911 kb on + strand, within Psyr_3494at 4163.915 kb on - strand, within Psyr_3494at 4163.915 kb on - strand, within Psyr_3494at 4163.915 kb on - strand, within Psyr_3494at 4163.960 kb on - strand, within Psyr_3494at 4163.960 kb on - strand, within Psyr_3494at 4163.960 kb on - strand, within Psyr_3494at 4164.048 kb on + strand, within Psyr_3494at 4164.061 kb on + strand, within Psyr_3494at 4164.061 kb on + strand, within Psyr_3494at 4164.062 kb on - strand, within Psyr_3494at 4164.229 kb on - strandat 4164.252 kb on + strandat 4164.253 kb on - strandat 4164.253 kb on - strandat 4164.256 kb on + strandat 4164.256 kb on + strandat 4164.256 kb on + strandat 4164.256 kb on + strandat 4164.257 kb on - strandat 4164.257 kb on - strandat 4164.257 kb on - strandat 4164.257 kb on - strandat 4164.257 kb on - strandat 4164.403 kb on + strand, within Psyr_3495at 4164.403 kb on + strand, within Psyr_3495at 4164.403 kb on + strand, within Psyr_3495at 4164.403 kb on + strand, within Psyr_3495at 4164.403 kb on + strand, within Psyr_3495at 4164.403 kb on + strand, within Psyr_3495at 4164.403 kb on + strand, within Psyr_3495at 4164.404 kb on - strand, within Psyr_3495at 4164.404 kb on - strand, within Psyr_3495at 4164.404 kb on - strand, within Psyr_3495at 4164.404 kb on - strand, within Psyr_3495at 4164.434 kb on + strand, within Psyr_3495at 4164.434 kb on + strand, within Psyr_3495at 4164.482 kb on + strand, within Psyr_3495at 4164.482 kb on + strand, within Psyr_3495at 4164.483 kb on - strand, within Psyr_3495at 4164.483 kb on - strand, within Psyr_3495at 4164.506 kb on + strand, within Psyr_3495at 4164.507 kb on - strand, within Psyr_3495at 4164.618 kb on + strand, within Psyr_3495at 4164.619 kb on - strand, within Psyr_3495at 4164.807 kb on - strand, within Psyr_3495at 4164.807 kb on - strand, within Psyr_3495at 4164.807 kb on - strand, within Psyr_3495at 4164.854 kb on + strand, within Psyr_3495at 4164.854 kb on + strand, within Psyr_3495at 4164.855 kb on - strand, within Psyr_3495at 4165.043 kb on + strandat 4165.043 kb on + strandat 4165.044 kb on - strandat 4165.179 kb on - strand, within Psyr_3496at 4165.252 kb on + strand, within Psyr_3496at 4165.252 kb on + strand, within Psyr_3496at 4165.252 kb on + strand, within Psyr_3496at 4165.253 kb on - strand, within Psyr_3496at 4165.253 kb on - strand, within Psyr_3496at 4165.253 kb on - strand, within Psyr_3496

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Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Pepper
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4,162,491 + Psyr_3493 0.21 +0.2
4,162,491 + Psyr_3493 0.21 +1.9
4,162,492 - Psyr_3493 0.21 +0.5
4,162,492 - Psyr_3493 0.21 +1.1
4,162,492 - Psyr_3493 0.21 +0.9
4,162,492 - Psyr_3493 0.21 +1.2
4,162,492 - Psyr_3493 0.21 +0.9
4,162,492 - Psyr_3493 0.21 -0.6
4,162,666 + Psyr_3493 0.40 +0.5
4,162,666 + Psyr_3493 0.40 +0.2
4,162,667 - Psyr_3493 0.40 -3.1
4,162,696 + Psyr_3493 0.43 +1.9
4,162,696 + Psyr_3493 0.43 -1.1
4,162,696 + Psyr_3493 0.43 +0.9
4,162,696 + Psyr_3493 0.43 +0.8
4,162,696 + Psyr_3493 0.43 -0.8
4,162,697 - Psyr_3493 0.43 -2.5
4,162,697 - Psyr_3493 0.43 -0.3
4,162,697 - Psyr_3493 0.43 +1.2
4,162,697 - Psyr_3493 0.43 +1.5
4,162,697 - Psyr_3493 0.43 +0.6
4,162,697 - Psyr_3493 0.43 +2.0
4,162,878 + Psyr_3493 0.63 -0.9
4,162,966 + Psyr_3493 0.73 -0.4
4,162,966 + Psyr_3493 0.73 -3.6
4,162,967 - Psyr_3493 0.73 +0.0
4,163,062 + Psyr_3493 0.83 -0.0
4,163,062 + Psyr_3493 0.83 +2.9
4,163,062 + Psyr_3493 0.83 +1.1
4,163,062 + Psyr_3493 0.83 +1.8
4,163,062 + Psyr_3493 0.83 -0.8
4,163,062 + Psyr_3493 0.83 -2.6
4,163,063 - Psyr_3493 0.83 +1.5
4,163,063 - Psyr_3493 0.83 -0.6
4,163,063 - Psyr_3493 0.83 +0.3
4,163,063 - Psyr_3493 0.83 +0.6
4,163,071 + Psyr_3493 0.84 +1.7
4,163,071 + Psyr_3493 0.84 -0.6
4,163,072 - Psyr_3493 0.84 -0.1
4,163,072 - Psyr_3493 0.84 +0.3
4,163,175 + +3.9
4,163,175 + +1.2
4,163,176 - +1.0
4,163,176 - +1.2
4,163,195 - -1.0
4,163,201 + +0.1
4,163,202 - -2.4
4,163,205 + +2.2
4,163,206 - -1.3
4,163,206 - -0.4
4,163,285 - +1.4
4,163,331 + -0.9
4,163,331 + +0.4
4,163,348 + -2.4
4,163,348 + -2.1
4,163,348 + -0.8
4,163,348 + -2.7
4,163,349 - +0.1
4,163,349 - +0.8
4,163,349 - -2.3
4,163,352 + +0.7
4,163,352 + +0.7
4,163,352 + -0.0
4,163,352 + -2.1
4,163,352 + +0.1
4,163,352 + +2.4
4,163,352 + +3.7
4,163,352 + +0.5
4,163,352 + +0.7
4,163,352 + +1.2
4,163,352 + -1.2
4,163,352 + +0.2
4,163,352 + -1.4
4,163,352 + -2.6
4,163,352 + +0.2
4,163,352 + +1.0
4,163,352 + +1.1
4,163,352 + -1.1
4,163,352 + -2.0
4,163,353 - -2.7
4,163,353 - +1.5
4,163,353 - -0.2
4,163,353 - -0.1
4,163,353 - +0.2
4,163,353 - +0.5
4,163,353 - -3.1
4,163,353 - +1.6
4,163,353 - -1.1
4,163,353 - -1.6
4,163,363 - -0.4
4,163,488 + +2.2
4,163,488 + -1.4
4,163,488 + +0.4
4,163,488 + -4.2
4,163,488 + +0.9
4,163,489 - +1.2
4,163,489 - +1.2
4,163,489 - +1.2
4,163,489 - +0.3
4,163,489 - +0.7
4,163,489 - -3.3
4,163,489 - -1.1
4,163,519 - +2.1
4,163,579 - Psyr_3494 0.16 +0.2
4,163,596 + Psyr_3494 0.18 -1.4
4,163,596 + Psyr_3494 0.18 -2.4
4,163,596 + Psyr_3494 0.18 -1.1
4,163,719 + Psyr_3494 0.33 -0.4
4,163,719 + Psyr_3494 0.33 -1.6
4,163,719 + Psyr_3494 0.33 -0.0
4,163,719 + Psyr_3494 0.33 -0.1
4,163,719 + Psyr_3494 0.33 +0.3
4,163,719 + Psyr_3494 0.33 -0.4
4,163,719 + Psyr_3494 0.33 -0.1
4,163,719 + Psyr_3494 0.33 -0.9
4,163,719 + Psyr_3494 0.33 -0.8
4,163,719 + Psyr_3494 0.33 -0.6
4,163,719 + Psyr_3494 0.33 -3.0
4,163,719 + Psyr_3494 0.33 +1.2
4,163,720 - Psyr_3494 0.33 +0.1
4,163,720 - Psyr_3494 0.33 -1.2
4,163,720 - Psyr_3494 0.33 -0.6
4,163,720 - Psyr_3494 0.33 +0.3
4,163,720 - Psyr_3494 0.33 -1.8
4,163,720 - Psyr_3494 0.33 +1.3
4,163,720 - Psyr_3494 0.33 +0.9
4,163,720 - Psyr_3494 0.33 +0.8
4,163,720 - Psyr_3494 0.33 +3.8
4,163,720 - Psyr_3494 0.33 -1.0
4,163,720 - Psyr_3494 0.33 +0.6
4,163,720 - Psyr_3494 0.33 +1.6
4,163,720 - Psyr_3494 0.33 -1.6
4,163,720 - Psyr_3494 0.33 -1.6
4,163,720 - Psyr_3494 0.33 -0.6
4,163,720 - Psyr_3494 0.33 -1.2
4,163,720 - Psyr_3494 0.33 +1.8
4,163,720 - Psyr_3494 0.33 -0.6
4,163,720 - Psyr_3494 0.33 -0.3
4,163,720 - Psyr_3494 0.33 -3.6
4,163,720 - Psyr_3494 0.33 -0.3
4,163,720 - Psyr_3494 0.33 +0.2
4,163,724 - Psyr_3494 0.34 -1.8
4,163,724 - Psyr_3494 0.34 +1.2
4,163,738 + Psyr_3494 0.36 +1.3
4,163,738 + Psyr_3494 0.36 -2.0
4,163,738 + Psyr_3494 0.36 +0.8
4,163,739 - Psyr_3494 0.36 +2.3
4,163,749 + Psyr_3494 0.37 +0.6
4,163,749 + Psyr_3494 0.37 -1.0
4,163,749 + Psyr_3494 0.37 -0.2
4,163,749 + Psyr_3494 0.37 -0.2
4,163,750 - Psyr_3494 0.37 +0.9
4,163,791 + Psyr_3494 0.42 +2.0
4,163,792 - Psyr_3494 0.42 -0.5
4,163,845 + Psyr_3494 0.49 +1.1
4,163,845 + Psyr_3494 0.49 -1.6
4,163,846 - Psyr_3494 0.49 -1.1
4,163,846 - Psyr_3494 0.49 -1.7
4,163,846 - Psyr_3494 0.49 +1.9
4,163,884 + Psyr_3494 0.54 +0.4
4,163,885 - Psyr_3494 0.54 -1.5
4,163,911 + Psyr_3494 0.57 +3.1
4,163,911 + Psyr_3494 0.57 -2.4
4,163,915 - Psyr_3494 0.58 +0.9
4,163,915 - Psyr_3494 0.58 +0.4
4,163,915 - Psyr_3494 0.58 -1.1
4,163,960 - Psyr_3494 0.63 +0.4
4,163,960 - Psyr_3494 0.63 -0.2
4,163,960 - Psyr_3494 0.63 -0.6
4,164,048 + Psyr_3494 0.74 +1.2
4,164,061 + Psyr_3494 0.76 +1.5
4,164,061 + Psyr_3494 0.76 +0.6
4,164,062 - Psyr_3494 0.76 -2.7
4,164,229 - -1.6
4,164,252 + +1.4
4,164,253 - -2.4
4,164,253 - +0.3
4,164,256 + +1.6
4,164,256 + -2.1
4,164,256 + -2.6
4,164,256 + -1.5
4,164,257 - -0.4
4,164,257 - +2.5
4,164,257 - -0.9
4,164,257 - +0.2
4,164,257 - +1.5
4,164,403 + Psyr_3495 0.12 -2.8
4,164,403 + Psyr_3495 0.12 -0.4
4,164,403 + Psyr_3495 0.12 -0.3
4,164,403 + Psyr_3495 0.12 -1.5
4,164,403 + Psyr_3495 0.12 +3.3
4,164,403 + Psyr_3495 0.12 -1.1
4,164,403 + Psyr_3495 0.12 -0.6
4,164,404 - Psyr_3495 0.12 -1.8
4,164,404 - Psyr_3495 0.12 -2.5
4,164,404 - Psyr_3495 0.12 +1.1
4,164,404 - Psyr_3495 0.12 -1.1
4,164,434 + Psyr_3495 0.16 -1.8
4,164,434 + Psyr_3495 0.16 -2.3
4,164,482 + Psyr_3495 0.23 -1.7
4,164,482 + Psyr_3495 0.23 +0.8
4,164,483 - Psyr_3495 0.23 -0.0
4,164,483 - Psyr_3495 0.23 +2.0
4,164,506 + Psyr_3495 0.26 +0.1
4,164,507 - Psyr_3495 0.27 +2.2
4,164,618 + Psyr_3495 0.43 -1.7
4,164,619 - Psyr_3495 0.43 -2.1
4,164,807 - Psyr_3495 0.70 -0.2
4,164,807 - Psyr_3495 0.70 -0.6
4,164,807 - Psyr_3495 0.70 +1.3
4,164,854 + Psyr_3495 0.76 -2.6
4,164,854 + Psyr_3495 0.76 -1.6
4,164,855 - Psyr_3495 0.77 -0.2
4,165,043 + +1.9
4,165,043 + +1.1
4,165,044 - -1.1
4,165,179 - Psyr_3496 0.10 +0.0
4,165,252 + Psyr_3496 0.15 -0.7
4,165,252 + Psyr_3496 0.15 -2.3
4,165,252 + Psyr_3496 0.15 -1.8
4,165,253 - Psyr_3496 0.15 -3.7
4,165,253 - Psyr_3496 0.15 +1.6
4,165,253 - Psyr_3496 0.15 +0.1

Or see this region's nucleotide sequence