Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3151

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
3,774,592	-		Psyr_3150	0.54	+2.0
3,774,646	-		Psyr_3150	0.58	+2.0
3,774,718	+		Psyr_3150	0.64	+1.9
3,774,718	+		Psyr_3150	0.64	+1.1
3,774,719	-		Psyr_3150	0.64	+0.8
3,774,761	+		Psyr_3150	0.68	+0.3
3,774,761	+		Psyr_3150	0.68	+2.8
3,774,761	+		Psyr_3150	0.68	+2.5
3,774,761	+		Psyr_3150	0.68	+1.1
3,774,761	+		Psyr_3150	0.68	-1.2
3,774,761	+		Psyr_3150	0.68	-1.7
3,774,761	+		Psyr_3150	0.68	-1.2
3,774,761	+		Psyr_3150	0.68	-2.2
3,774,761	+		Psyr_3150	0.68	+0.3
3,774,761	+		Psyr_3150	0.68	+4.8
3,774,761	+		Psyr_3150	0.68	-2.1
3,774,761	+		Psyr_3150	0.68	+0.1
3,774,761	+		Psyr_3150	0.68	-0.6
3,774,761	+		Psyr_3150	0.68	+0.1
3,774,761	+		Psyr_3150	0.68	+3.0
3,774,761	+		Psyr_3150	0.68	-0.1
3,774,761	+		Psyr_3150	0.68	+0.8
3,774,761	+		Psyr_3150	0.68	+0.7
3,774,761	+		Psyr_3150	0.68	-1.7
3,774,761	+		Psyr_3150	0.68	-2.6
3,774,761	+		Psyr_3150	0.68	+1.5
3,774,761	+		Psyr_3150	0.68	+0.1
3,774,761	+		Psyr_3150	0.68	+0.9
3,774,761	+		Psyr_3150	0.68	-0.5
3,774,761	+		Psyr_3150	0.68	+0.1
3,774,761	+		Psyr_3150	0.68	-0.1
3,774,761	+		Psyr_3150	0.68	+1.1
3,774,762	-		Psyr_3150	0.68	-0.9
3,774,762	-		Psyr_3150	0.68	+0.2
3,774,762	-		Psyr_3150	0.68	-0.3
3,774,762	-		Psyr_3150	0.68	-1.7
3,774,762	-		Psyr_3150	0.68	+1.9
3,774,762	-		Psyr_3150	0.68	+1.0
3,774,762	-		Psyr_3150	0.68	+0.3
3,774,762	-		Psyr_3150	0.68	-0.0
3,774,762	-		Psyr_3150	0.68	+1.3
3,774,762	-		Psyr_3150	0.68	+0.5
3,774,762	-		Psyr_3150	0.68	+0.1
3,774,762	-		Psyr_3150	0.68	+0.6
3,774,762	-		Psyr_3150	0.68	-0.9
3,774,762	-		Psyr_3150	0.68	-0.0
3,774,762	-		Psyr_3150	0.68	+1.7
3,774,762	-		Psyr_3150	0.68	+2.7
3,774,762	-		Psyr_3150	0.68	-1.1
3,774,762	-		Psyr_3150	0.68	-1.5
3,774,762	-		Psyr_3150	0.68	+0.2
3,774,762	-		Psyr_3150	0.68	+0.5
3,774,762	-		Psyr_3150	0.68	-2.6
3,774,762	-		Psyr_3150	0.68	-0.3
3,774,762	-		Psyr_3150	0.68	+1.0
3,774,762	-		Psyr_3150	0.68	-1.9
3,774,762	-		Psyr_3150	0.68	-0.8
3,774,762	-		Psyr_3150	0.68	+1.0
3,774,762	-		Psyr_3150	0.68	-1.5
3,774,762	-		Psyr_3150	0.68	+0.4
3,774,762	-		Psyr_3150	0.68	+1.1
3,774,762	-		Psyr_3150	0.68	-0.5
3,774,762	-		Psyr_3150	0.68	+1.6
3,774,763	+		Psyr_3150	0.68	+1.3
3,774,763	+		Psyr_3150	0.68	-0.8
3,774,763	+		Psyr_3150	0.68	-2.9
3,774,763	+		Psyr_3150	0.68	-1.9
3,774,763	+		Psyr_3150	0.68	+1.9
3,774,763	+		Psyr_3150	0.68	-1.5
3,774,763	+				+0.5
3,774,763	+		Psyr_3150	0.68	+0.8
3,774,763	+		Psyr_3150	0.68	+2.2
3,774,763	+		Psyr_3150	0.68	+1.3
3,774,763	+		Psyr_3150	0.68	-3.0
3,774,764	-		Psyr_3150	0.68	+1.4
3,774,764	-		Psyr_3150	0.68	+0.5
3,774,764	-		Psyr_3150	0.68	+0.3
3,774,764	-		Psyr_3150	0.68	+1.1
3,774,764	-		Psyr_3150	0.68	+2.6
3,774,764	-		Psyr_3150	0.68	-1.2
3,774,764	-		Psyr_3150	0.68	+1.8
3,774,764	-		Psyr_3150	0.68	+0.2
3,774,765	+		Psyr_3150	0.68	-2.2
3,774,765	+		Psyr_3150	0.68	-0.5
3,774,765	+		Psyr_3150	0.68	-0.4
3,774,765	+		Psyr_3150	0.68	+3.1
3,774,765	+		Psyr_3150	0.68	-0.9
3,774,765	+		Psyr_3150	0.68	-1.6
3,774,765	+		Psyr_3150	0.68	-2.2
3,774,766	-		Psyr_3150	0.68	+0.8
3,774,766	-		Psyr_3150	0.68	-0.2
3,774,766	-		Psyr_3150	0.68	+1.7
3,774,766	-		Psyr_3150	0.68	+1.0
3,774,766	-		Psyr_3150	0.68	+1.1
3,774,766	-		Psyr_3150	0.68	-2.5
3,774,766	-		Psyr_3150	0.68	-1.6
3,775,344	+		Psyr_3151	0.11	-0.9
3,775,345	-		Psyr_3151	0.11	-2.2
3,775,388	+		Psyr_3151	0.14	+1.8
3,775,538	+		Psyr_3151	0.22	-0.9
3,775,539	-		Psyr_3151	0.22	-0.8
3,775,573	-		Psyr_3151	0.24	+0.5
3,775,847	+		Psyr_3151	0.40	+1.7
3,775,847	+		Psyr_3151	0.40	-2.3
3,775,848	-		Psyr_3151	0.40	-1.6
3,775,848	-		Psyr_3151	0.40	+0.8
3,775,848	-		Psyr_3151	0.40	+2.0
3,775,848	-		Psyr_3151	0.40	-0.2
3,775,848	-		Psyr_3151	0.40	+1.9
3,775,849	-		Psyr_3151	0.40	+1.3
3,776,266	+		Psyr_3151	0.64	-1.2
3,776,412	-		Psyr_3151	0.72	-1.6
3,776,484	-		Psyr_3151	0.76	-1.9
3,776,722	+		Psyr_3151	0.90	-1.5
3,776,734	-				+1.0
3,776,904	+				+0.8
3,776,904	+				-1.2
3,776,904	+				-1.5
3,776,904	+				+3.0
3,776,904	+				+0.1
3,776,904	+				+1.1
3,776,904	+				+0.1
3,776,904	+				-1.2
3,776,904	+				-0.9
3,776,904	+				+3.1
3,776,904	+				-1.2
3,776,905	-				+1.6
3,776,905	-				+1.2
3,776,905	-				+0.2
3,776,905	-				+1.1
3,776,905	-				+0.4
3,776,905	-				-2.2
3,776,905	-				-0.5
3,776,905	-				+4.9
3,776,905	-				+1.8
3,776,905	-				-2.1
3,776,905	-				-1.6
3,776,905	-				+1.9
3,776,905	-				+0.7
3,776,905	-				-1.4
3,776,905	-				-0.5
3,776,907	+				-1.0
3,776,907	+				+1.1
3,776,907	+				+1.2
3,776,907	+				-1.9
3,776,907	+				+3.4
3,776,907	+				+0.2
3,776,908	-				+1.4
3,776,908	-				+3.3
3,776,908	-				-0.8
3,776,908	-				-1.3
3,776,908	-				+0.3
3,777,185	+		Psyr_3152	0.78	+2.1
3,777,186	-		Psyr_3152	0.79	+2.3
3,777,235	+				-0.2
3,777,236	-				+1.0
3,777,236	-				+0.2
3,777,388	+				+0.1
3,777,389	-				-0.6
3,777,389	-				+3.3
3,777,399	+				+2.2
3,777,399	+				-0.1
3,777,399	+				+4.5
3,777,399	+				+1.1
3,777,399	+				-1.2
3,777,399	+				+3.0
3,777,400	-				-1.4
3,777,412	-				-2.1
3,777,418	-				-1.2
3,777,418	-				-0.8
3,777,543	-				-1.9
3,777,606	-				-1.1
3,777,609	+				-2.0
3,777,610	-				-1.7
3,777,622	-				+1.8
3,777,650	+				+0.1
3,777,676	-				+0.7
3,777,764	+				+1.1
3,777,764	+				+0.4
3,777,765	-				-1.0
3,777,844	+				-1.7
3,777,844	+				+1.0
3,777,844	+				-1.0
3,777,844	+				+0.3
3,777,844	+				+0.2
3,777,845	-				-2.6
3,777,845	-				-0.5
3,777,845	-				+0.9
3,777,845	-				-2.1
3,777,889	+				+0.9