Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1539

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
1,731,354	+				-0.6
1,731,354	+				+0.3
1,731,354	+				-0.6
1,731,354	+				-2.6
1,731,354	+				-0.8
1,731,354	+				-0.9
1,731,354	+				+0.8
1,731,354	+				+0.2
1,731,354	+				+1.3
1,731,354	+				-0.6
1,731,354	+				-1.8
1,731,354	+				-1.7
1,731,354	+				+0.4
1,731,354	+				+0.3
1,731,354	+				-1.2
1,731,354	+				+1.6
1,731,354	+				+1.6
1,731,354	+				-2.6
1,731,354	+				+0.7
1,731,354	+				-1.6
1,731,354	+				-0.2
1,731,354	+				+1.1
1,731,355	-				-1.1
1,731,355	-				+0.9
1,731,355	-				-1.5
1,731,355	-				+0.5
1,731,355	-				+1.7
1,731,355	-				+2.1
1,731,355	-				+2.5
1,731,355	-				-2.0
1,731,355	-				-2.5
1,731,355	-				+0.8
1,731,355	-				+0.1
1,731,355	-				-0.6
1,731,355	-				+1.5
1,731,355	-				-1.8
1,731,355	-				-1.7
1,731,355	-				-1.2
1,731,355	-				-0.5
1,731,355	-				-1.0
1,731,355	-				+0.1
1,731,388	+				-3.2
1,731,388	+				+0.2
1,731,388	+				+1.2
1,731,388	+				-0.6
1,731,388	+				-0.8
1,731,388	+				-1.9
1,731,389	-				+2.5
1,731,389	-				+0.2
1,731,389	-				+1.5
1,731,389	-				-0.2
1,731,389	-				-2.6
1,731,403	+				-2.2
1,731,404	-				+0.0
1,731,428	+				-0.3
1,731,429	-				+2.0
1,731,429	-				+0.8
1,731,429	-				-0.8
1,731,452	+				-0.5
1,731,453	-				+0.1
1,731,484	+				+0.5
1,731,485	-				-1.2
1,731,485	-				+1.8
1,731,577	+				-3.0
1,731,591	+				+2.8
1,731,592	-				+2.8
1,731,619	+				+1.1
1,731,664	+				-1.6
1,731,713	+				+0.2
1,731,744	+				-2.0
1,731,745	-				+1.0
1,731,804	+				-0.4
1,731,804	+				-0.4
1,731,841	+				+4.8
1,731,842	-				+0.9
1,731,865	+				-2.4
1,731,894	+				+0.4
1,731,895	-				+0.2
1,731,903	-				+2.3
1,731,903	-				-0.0
1,732,012	+				-0.3
1,732,022	+				-1.6
1,732,041	+				+1.4
1,732,041	+				-0.2
1,732,041	+				-0.5
1,732,042	-				+1.1
1,732,042	-				-2.3
1,732,042	-				-1.2
1,732,042	-				+0.6
1,732,066	-				-1.0
1,732,113	+				+0.4
1,732,113	+				-1.2
1,732,114	-				-1.5
1,732,114	-				+1.3
1,732,129	-				-2.2
1,732,231	-				+2.1
1,732,261	-				+1.7
1,732,316	+				-0.3
1,732,316	+				-1.6
1,732,316	+				+1.6
1,732,316	+				+0.1
1,732,316	+				+0.8
1,732,317	-				-2.0
1,732,317	-				-2.0
1,732,317	-				+0.8
1,732,317	-				-0.0
1,732,317	-				-1.8
1,732,317	-				-1.0
1,732,318	+				-1.9
1,732,318	+				+0.9
1,732,318	+				+0.4
1,732,318	+				-1.2
1,732,318	+				+1.1
1,732,318	+				+2.6
1,732,318	+				-1.0
1,732,319	-				-1.6
1,732,319	-				-1.1
1,732,319	-				-2.1
1,732,319	-				-1.0
1,732,319	-				-1.2
1,732,348	+				+1.5
1,732,348	+				+0.6
1,732,349	-				+2.1
1,732,349	-				+0.5
1,732,351	+				-2.0
1,732,372	-				-2.6
1,732,418	+				-0.8
1,732,418	+				-2.3
1,732,418	+				+0.4
1,732,420	+				-1.5
1,732,421	-				-0.2
1,732,441	+				-3.2
1,732,474	+				+0.4
1,732,685	+		Psyr_1539	0.18	+0.8
1,732,685	+		Psyr_1539	0.18	-0.3
1,732,685	+		Psyr_1539	0.18	+1.1
1,732,685	+		Psyr_1539	0.18	-1.5
1,732,685	+		Psyr_1539	0.18	+2.7
1,732,685	+		Psyr_1539	0.18	+1.2
1,732,686	-		Psyr_1539	0.18	+2.1
1,732,686	-		Psyr_1539	0.18	-0.8
1,732,686	-		Psyr_1539	0.18	+0.8
1,732,686	-		Psyr_1539	0.18	+0.7
1,732,686	-		Psyr_1539	0.18	-0.0
1,732,686	-		Psyr_1539	0.18	-1.0
1,732,688	-		Psyr_1539	0.18	+0.7
1,732,843	+		Psyr_1539	0.26	-2.6
1,732,843	+		Psyr_1539	0.26	+0.1
1,732,843	+		Psyr_1539	0.26	-1.6
1,732,844	-		Psyr_1539	0.26	-0.4
1,732,844	-		Psyr_1539	0.26	+1.7
1,732,880	+		Psyr_1539	0.28	+1.2
1,732,881	-		Psyr_1539	0.28	-3.0
1,732,881	-		Psyr_1539	0.28	-1.3
1,733,018	+		Psyr_1539	0.35	-3.2
1,733,018	+		Psyr_1539	0.35	+1.1
1,733,018	+		Psyr_1539	0.35	-0.2
1,733,018	+		Psyr_1539	0.35	-1.0
1,733,018	+		Psyr_1539	0.35	-0.6
1,733,018	+		Psyr_1539	0.35	+0.1
1,733,018	+		Psyr_1539	0.35	-0.4
1,733,018	+		Psyr_1539	0.35	+1.1
1,733,018	+		Psyr_1539	0.35	-1.0
1,733,018	+		Psyr_1539	0.35	-2.5
1,733,018	+		Psyr_1539	0.35	+1.3
1,733,019	-		Psyr_1539	0.35	-0.6
1,733,019	-		Psyr_1539	0.35	-1.0
1,733,019	-		Psyr_1539	0.35	+0.4
1,733,019	-		Psyr_1539	0.35	-3.3
1,733,019	-		Psyr_1539	0.35	+1.3
1,733,019	-		Psyr_1539	0.35	-2.2
1,733,019	-		Psyr_1539	0.35	-0.8
1,733,019	-		Psyr_1539	0.35	+0.8
1,733,019	-		Psyr_1539	0.35	+3.2
1,733,019	-		Psyr_1539	0.35	-1.4
1,733,019	-		Psyr_1539	0.35	-0.9
1,733,040	+		Psyr_1539	0.37	-1.2
1,733,040	+		Psyr_1539	0.37	-2.8
1,733,040	+		Psyr_1539	0.37	-0.1
1,733,040	+		Psyr_1539	0.37	-1.0
1,733,040	+		Psyr_1539	0.37	+0.9
1,733,041	-		Psyr_1539	0.37	-0.6
1,733,041	-		Psyr_1539	0.37	-2.7
1,733,041	-		Psyr_1539	0.37	+2.1
1,733,041	-		Psyr_1539	0.37	+0.2
1,733,041	-		Psyr_1539	0.37	+0.2
1,733,041	-		Psyr_1539	0.37	+0.5
1,733,041	-		Psyr_1539	0.37	+0.1
1,733,041	-		Psyr_1539	0.37	-1.4
1,733,041	-		Psyr_1539	0.37	-0.6
1,733,305	+		Psyr_1539	0.51	-1.1
1,733,305	+		Psyr_1539	0.51	-0.6
1,733,306	-		Psyr_1539	0.51	-2.0
1,733,309	+		Psyr_1539	0.51	-0.4
1,733,309	+		Psyr_1539	0.51	+2.8
1,733,310	-		Psyr_1539	0.51	-1.5
1,733,310	-		Psyr_1539	0.51	+1.1
1,733,539	+		Psyr_1539	0.63	-1.5
1,733,540	-		Psyr_1539	0.63	+1.5
1,733,550	+		Psyr_1539	0.64	+0.7
1,733,551	-		Psyr_1539	0.64	+0.4
1,733,551	-		Psyr_1539	0.64	-2.2
1,733,575	-		Psyr_1539	0.65	-1.2
1,733,578	+		Psyr_1539	0.65	+0.0
1,733,578	+		Psyr_1539	0.65	+1.1
1,733,646	+		Psyr_1539	0.69	-1.0
1,733,698	+		Psyr_1539	0.72	-1.2
1,733,699	-		Psyr_1539	0.72	+2.7
1,733,739	+		Psyr_1539	0.74	-1.3
1,733,896	+		Psyr_1539	0.82	+1.6
1,733,896	+		Psyr_1539	0.82	+0.2
1,733,896	+		Psyr_1539	0.82	-1.8
1,733,896	+		Psyr_1539	0.82	-0.1
1,733,896	+		Psyr_1539	0.82	-2.0
1,733,898	+		Psyr_1539	0.82	-1.1
1,733,899	-		Psyr_1539	0.82	-0.9
1,733,899	-		Psyr_1539	0.82	-1.0
1,733,926	+		Psyr_1539	0.84	-2.6
1,733,926	+		Psyr_1539	0.84	-1.0
1,733,926	+		Psyr_1539	0.84	-0.4
1,733,927	-		Psyr_1539	0.84	+1.4
1,733,941	-		Psyr_1539	0.84	-2.7
1,734,010	+		Psyr_1539	0.88	-2.3
1,734,011	-		Psyr_1539	0.88	+1.4
1,734,011	-		Psyr_1539	0.88	-1.0
1,734,011	-		Psyr_1539	0.88	-2.0
1,734,011	-		Psyr_1539	0.88	-0.4
1,734,079	+				-1.5
1,734,080	-				-2.9
1,734,080	-				+0.2
1,734,080	-				+0.7
1,734,080	-				-0.5
1,734,096	+				-1.4
1,734,096	+				-0.1
1,734,096	+				-0.6
1,734,096	+				-0.4
1,734,096	+				-0.8
1,734,096	+				+0.9
1,734,096	+				-1.1
1,734,376	-				-0.5
1,734,379	+				-0.6
1,734,379	+				-2.0
1,734,379	+				+1.1
1,734,379	+				-1.6
1,734,380	-				+2.0
1,734,380	-				+0.9
1,734,380	-				+0.8
1,734,380	-				+0.7
1,734,380	-				-0.0
1,734,380	-				-0.4
1,734,391	+				-2.0
1,734,391	+				+0.4
1,734,391	+				-0.8
1,734,392	-				+1.5
1,734,392	-				+0.3
1,734,392	-				-1.0
1,734,392	-				-0.8
1,734,395	+				+1.4
1,734,466	+				-0.1
1,734,467	-				-2.1
1,734,494	+				-0.3
1,734,494	+				+1.0
1,734,494	+				-1.0
1,734,494	+				-0.6
1,734,494	+				+0.7
1,734,494	+				+0.1
1,734,495	-				+1.4
1,734,495	-				+0.1
1,734,495	-				-3.3
1,734,495	-				+0.9
1,734,495	-				-0.8
1,734,495	-				-0.3
1,734,495	-				+1.8
1,734,495	-				-0.4
1,734,495	-				-1.5
1,734,495	-				-2.1
1,734,495	-				-1.0
1,734,495	-				+1.5
1,734,613	+				-1.6
1,734,613	+				+0.1
1,734,613	+				-1.8
1,734,614	-				-1.0
1,734,614	-				-0.6
1,734,614	-				-0.7
1,734,767	+		Psyr_1540	0.56	-0.8
1,734,789	+		Psyr_1540	0.64	+1.2
1,734,790	-		Psyr_1540	0.64	+1.5
1,734,803	+		Psyr_1540	0.69	+1.6
1,734,803	+		Psyr_1540	0.69	+2.5
1,734,804	-		Psyr_1540	0.70	-2.5
1,734,822	-		Psyr_1540	0.76	-0.5
1,734,926	+				-1.3
1,734,926	+				-0.1
1,734,927	-				-0.2
1,735,043	+		Psyr_1541	0.18	+1.5
1,735,044	-		Psyr_1541	0.18	+1.2
1,735,044	-		Psyr_1541	0.18	-0.1
1,735,143	+		Psyr_1541	0.35	-0.7
1,735,144	-		Psyr_1541	0.35	+2.2
1,735,211	+		Psyr_1541	0.47	+1.5
1,735,211	+		Psyr_1541	0.47	+0.3
1,735,211	+		Psyr_1541	0.47	-2.0