Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1428

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
1,615,807	+		Psyr_1426	0.61	-0.6
1,615,808	-		Psyr_1426	0.61	-0.3
1,615,846	-		Psyr_1426	0.64	+2.8
1,615,951	+		Psyr_1426	0.71	-2.6
1,615,951	+		Psyr_1426	0.71	-1.9
1,615,951	+		Psyr_1426	0.71	+0.8
1,615,951	+		Psyr_1426	0.71	+0.4
1,615,952	-		Psyr_1426	0.71	-0.2
1,616,041	+		Psyr_1426	0.77	+1.4
1,616,041	+		Psyr_1426	0.77	+0.8
1,616,065	+		Psyr_1426	0.78	+1.5
1,616,065	+		Psyr_1426	0.78	-2.7
1,616,066	-		Psyr_1426	0.78	+2.9
1,616,081	+		Psyr_1426	0.79	+0.7
1,616,129	-		Psyr_1426	0.82	-1.1
1,616,145	-		Psyr_1426	0.83	-1.8
1,616,174	+		Psyr_1426	0.85	-3.0
1,616,174	+		Psyr_1426	0.85	-2.2
1,616,175	-		Psyr_1426	0.85	+1.4
1,616,175	-		Psyr_1426	0.85	+2.6
1,616,187	+		Psyr_1426	0.86	+0.1
1,616,187	+		Psyr_1426	0.86	-0.2
1,616,188	-		Psyr_1426	0.86	+1.0
1,616,201	+		Psyr_1426	0.87	-1.9
1,616,342	+				-0.2
1,616,343	-				-1.9
1,616,367	+				-1.4
1,616,368	-				+1.3
1,616,368	-				+0.2
1,616,370	+				-2.4
1,616,371	-				-2.5
1,616,371	-				-0.7
1,616,371	-				+3.3
1,616,371	-				-2.3
1,616,371	-				+1.4
1,616,379	+				+0.0
1,616,380	-				-0.1
1,616,380	-				+0.3
1,616,380	-				-0.9
1,616,419	+				-1.2
1,616,500	+		Psyr_1427	0.27	+1.4
1,616,500	+		Psyr_1427	0.27	-1.6
1,616,501	-		Psyr_1427	0.27	+0.3
1,616,561	-		Psyr_1427	0.43	+1.2
1,616,597	+		Psyr_1427	0.53	-1.4
1,616,597	+		Psyr_1427	0.53	-3.3
1,616,597	+		Psyr_1427	0.53	+1.2
1,616,597	+		Psyr_1427	0.53	+0.8
1,616,597	+		Psyr_1427	0.53	-0.6
1,616,597	+		Psyr_1427	0.53	-1.6
1,616,597	+		Psyr_1427	0.53	-1.1
1,616,597	+		Psyr_1427	0.53	+0.2
1,616,597	+		Psyr_1427	0.53	+0.5
1,616,598	-		Psyr_1427	0.53	+1.1
1,616,598	-		Psyr_1427	0.53	-0.8
1,616,598	-		Psyr_1427	0.53	+0.4
1,616,598	-		Psyr_1427	0.53	-2.6
1,616,598	-		Psyr_1427	0.53	-2.3
1,616,598	-		Psyr_1427	0.53	-1.2
1,616,598	-		Psyr_1427	0.53	+0.1
1,616,598	-		Psyr_1427	0.53	+0.1
1,616,598	-		Psyr_1427	0.53	+0.4
1,616,598	-		Psyr_1427	0.53	-0.9
1,616,598	-		Psyr_1427	0.53	-1.6
1,616,603	+		Psyr_1427	0.55	+2.3
1,616,603	+		Psyr_1427	0.55	-3.0
1,616,603	+		Psyr_1427	0.55	+0.4
1,616,603	+		Psyr_1427	0.55	+0.4
1,616,637	+		Psyr_1427	0.64	+2.7
1,616,638	-		Psyr_1427	0.64	-0.5
1,616,638	-		Psyr_1427	0.64	-2.9
1,616,638	-		Psyr_1427	0.64	-0.9
1,616,638	-		Psyr_1427	0.64	-2.2
1,616,653	+		Psyr_1427	0.68	-0.7
1,616,653	+		Psyr_1427	0.68	+0.6
1,616,654	-		Psyr_1427	0.68	-1.4
1,616,654	-		Psyr_1427	0.68	+0.3
1,616,716	+		Psyr_1427	0.85	+0.4
1,616,716	+		Psyr_1427	0.85	+1.9
1,616,717	-		Psyr_1427	0.85	+0.8
1,616,717	-		Psyr_1427	0.85	+1.6
1,616,741	-				+1.8
1,616,741	-				-2.6
1,616,741	-				-1.5
1,616,780	+				-3.1
1,616,780	+				-0.5
1,616,781	-				+2.4
1,616,781	-				+0.8
1,616,877	+				-0.8
1,616,877	+				-0.2
1,616,877	+				-3.3
1,616,878	-				+0.3
1,616,878	-				-0.3
1,616,878	-				-0.1
1,616,878	-				+1.7
1,616,878	-				+0.0
1,617,051	+		Psyr_1428	0.20	-1.6
1,617,075	+		Psyr_1428	0.22	-1.3
1,617,253	+		Psyr_1428	0.35	-1.6
1,617,254	-		Psyr_1428	0.35	-2.2
1,617,365	+		Psyr_1428	0.43	-0.3
1,617,366	-		Psyr_1428	0.43	+0.6
1,617,366	-		Psyr_1428	0.43	-0.2
1,617,366	-		Psyr_1428	0.43	-0.4
1,617,366	-		Psyr_1428	0.43	+1.5
1,617,425	+		Psyr_1428	0.48	-0.6
1,617,426	-		Psyr_1428	0.48	-1.8
1,617,426	-		Psyr_1428	0.48	+1.1
1,617,426	-		Psyr_1428	0.48	+1.8
1,617,437	+		Psyr_1428	0.48	+2.0
1,617,438	-		Psyr_1428	0.48	+1.0
1,617,438	-		Psyr_1428	0.48	-1.7
1,617,438	-		Psyr_1428	0.48	-1.9
1,617,470	-		Psyr_1428	0.51	-1.5
1,617,482	+		Psyr_1428	0.52	+0.7
1,617,492	+		Psyr_1428	0.52	-2.2
1,617,493	-		Psyr_1428	0.52	+2.2
1,617,493	-		Psyr_1428	0.52	+0.7
1,617,493	-		Psyr_1428	0.52	+0.5
1,617,493	-		Psyr_1428	0.52	-0.1
1,617,493	-		Psyr_1428	0.52	-0.6
1,617,493	-		Psyr_1428	0.52	+0.8
1,617,503	+		Psyr_1428	0.53	+0.8
1,617,504	-		Psyr_1428	0.53	+0.6
1,617,504	-		Psyr_1428	0.53	+0.5
1,617,504	-		Psyr_1428	0.53	-1.2
1,617,504	-		Psyr_1428	0.53	-0.1
1,617,504	-		Psyr_1428	0.53	+0.2
1,617,530	+		Psyr_1428	0.55	-1.0
1,617,530	+		Psyr_1428	0.55	+1.2
1,617,531	-		Psyr_1428	0.55	-0.9
1,617,531	-		Psyr_1428	0.55	-1.4
1,617,531	-		Psyr_1428	0.55	-1.6
1,617,531	-		Psyr_1428	0.55	-2.5
1,617,632	+		Psyr_1428	0.63	-2.5
1,617,633	-		Psyr_1428	0.63	+0.2
1,617,772	+		Psyr_1428	0.73	-1.8
1,617,772	+		Psyr_1428	0.73	-0.6
1,617,810	+		Psyr_1428	0.76	-1.3
1,617,811	-		Psyr_1428	0.76	-0.9
1,617,911	+		Psyr_1428	0.83	-1.4
1,617,911	+		Psyr_1428	0.83	-1.4
1,617,912	-		Psyr_1428	0.83	+1.2
1,617,912	-		Psyr_1428	0.83	-3.6
1,617,965	+		Psyr_1428	0.87	+0.1
1,617,966	-		Psyr_1428	0.87	-1.4
1,618,019	-				-0.3
1,618,019	-				-0.7
1,618,119	-				-0.1
1,618,119	-				+0.9
1,618,142	+				-1.9
1,618,142	+				+0.4
1,618,142	+				+0.5
1,618,143	-				+1.5
1,618,143	-				+0.9
1,618,143	-				-0.7
1,618,143	-				+0.8
1,618,177	+				-2.9
1,618,177	+				-0.0
1,618,286	+		Psyr_1429	0.13	-2.7
1,618,287	-		Psyr_1429	0.13	-2.1
1,618,330	+		Psyr_1429	0.18	-0.4
1,618,407	+		Psyr_1429	0.26	-0.3
1,618,408	-		Psyr_1429	0.26	-2.8
1,618,476	+		Psyr_1429	0.33	+1.4
1,618,476	+		Psyr_1429	0.33	-0.8
1,618,476	+		Psyr_1429	0.33	-2.4
1,618,477	-		Psyr_1429	0.33	+2.4
1,618,477	-		Psyr_1429	0.33	-2.8
1,618,477	-		Psyr_1429	0.33	-2.8
1,618,477	-		Psyr_1429	0.33	-0.9
1,618,477	-		Psyr_1429	0.33	-2.1
1,618,513	-		Psyr_1429	0.37	-0.4
1,618,513	-		Psyr_1429	0.37	+2.1
1,618,585	-		Psyr_1429	0.45	-0.6
1,618,585	-		Psyr_1429	0.45	-1.8
1,618,650	+		Psyr_1429	0.52	+2.8
1,618,650	+		Psyr_1429	0.52	+1.5
1,618,650	+		Psyr_1429	0.52	-1.4
1,618,650	+		Psyr_1429	0.52	-1.6
1,618,651	-		Psyr_1429	0.52	-2.9
1,618,651	-		Psyr_1429	0.52	+0.4
1,618,651	-		Psyr_1429	0.52	-0.7
1,618,651	-		Psyr_1429	0.52	+1.5
1,618,700	-		Psyr_1429	0.57	-0.1
1,618,700	-		Psyr_1429	0.57	-2.2
1,618,728	-		Psyr_1429	0.60	-0.2
1,618,728	-		Psyr_1429	0.60	+1.4
1,618,759	+		Psyr_1429	0.63	+1.1
1,618,759	+		Psyr_1429	0.63	-3.5
1,618,760	-		Psyr_1429	0.64	-0.8
1,618,866	+		Psyr_1429	0.75	-0.8
1,618,866	+		Psyr_1429	0.75	-1.8
1,618,919	+		Psyr_1429	0.81	-1.2
1,618,919	+		Psyr_1429	0.81	-1.2
1,618,920	-		Psyr_1429	0.81	-1.5
1,618,920	-		Psyr_1429	0.81	-2.2
1,618,974	+		Psyr_1429	0.86	+1.9
1,618,974	+		Psyr_1429	0.86	-1.6
1,618,974	+		Psyr_1429	0.86	+0.5
1,618,975	-		Psyr_1429	0.86	+0.3
1,618,975	-		Psyr_1429	0.86	-1.9
1,618,975	-		Psyr_1429	0.86	+1.2