Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1072

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
1,214,030	+		Psyr_1071	0.34	+0.3
1,214,030	+		Psyr_1071	0.34	-0.3
1,214,031	-		Psyr_1071	0.35	+1.5
1,214,031	-		Psyr_1071	0.35	-1.9
1,214,031	-		Psyr_1071	0.35	-0.2
1,214,038	+		Psyr_1071	0.36	-0.4
1,214,038	+		Psyr_1071	0.36	-0.0
1,214,038	+		Psyr_1071	0.36	+1.3
1,214,038	+		Psyr_1071	0.36	+1.5
1,214,039	-		Psyr_1071	0.36	+0.1
1,214,039	-		Psyr_1071	0.36	-1.4
1,214,039	-		Psyr_1071	0.36	+1.4
1,214,039	-		Psyr_1071	0.36	-2.7
1,214,039	-		Psyr_1071	0.36	+0.9
1,214,039	-		Psyr_1071	0.36	-0.2
1,214,261	-		Psyr_1071	0.69	-0.5
1,214,272	-		Psyr_1071	0.71	+0.2
1,214,272	-		Psyr_1071	0.71	-0.5
1,214,323	-		Psyr_1071	0.79	+1.0
1,214,323	-		Psyr_1071	0.79	+1.2
1,214,323	-		Psyr_1071	0.79	-1.5
1,214,380	+		Psyr_1071	0.87	-0.6
1,214,381	-		Psyr_1071	0.88	-1.8
1,214,381	-		Psyr_1071	0.88	-2.2
1,214,411	+				+0.2
1,214,506	+				-0.5
1,214,506	+				-0.7
1,214,507	-				-0.2
1,214,551	+				+0.3
1,214,588	-				+3.0
1,214,588	-				-0.2
1,214,658	+				-0.2
1,214,658	+				-2.8
1,214,658	+				-1.0
1,214,658	+				-1.9
1,214,658	+				+1.1
1,214,658	+				+0.5
1,214,658	+				+1.0
1,214,658	+				-0.8
1,214,658	+				-0.5
1,214,658	+				-0.6
1,214,659	-				+0.4
1,214,659	-				+0.9
1,214,659	-				-1.0
1,214,659	-				+0.3
1,214,659	-				+0.2
1,214,659	-				-0.4
1,214,659	-				+1.8
1,214,659	-				-2.3
1,214,659	-				+1.3
1,214,660	+				-1.5
1,214,660	+				+1.3
1,214,660	+				-0.0
1,214,660	+				+1.8
1,214,661	-				-0.5
1,214,661	-				-1.7
1,214,661	-				-0.2
1,214,661	-				+2.3
1,214,666	+				-1.0
1,214,666	+				+2.0
1,214,667	-				-0.6
1,214,669	+				+2.0
1,214,669	+				-1.1
1,214,669	+				-1.9
1,214,669	+				-1.9
1,214,669	+				-0.3
1,214,669	+				-2.5
1,214,669	+				+2.7
1,214,669	+				-2.6
1,214,670	-				+2.0
1,214,670	-				-0.7
1,214,670	-				+1.5
1,214,670	-				+1.7
1,214,670	-				+0.3
1,214,670	-				+0.5
1,214,670	-				+1.0
1,214,670	-				-0.6
1,214,673	+				+1.9
1,214,673	+				-0.5
1,214,673	+				-0.7
1,214,673	+				-0.0
1,214,673	+				+1.2
1,214,673	+				+1.5
1,214,673	+				-1.6
1,214,673	+				+2.4
1,214,674	-				-0.5
1,214,674	-				+0.8
1,214,674	-				-0.5
1,214,674	-				+3.1
1,214,675	+				-0.5
1,214,736	-				+0.7
1,214,877	+				-0.5
1,214,878	-				-2.0
1,214,916	+				+0.5
1,214,916	+				+1.3
1,214,916	+				+0.6
1,214,916	+				-1.0
1,214,916	+				+1.0
1,214,917	-				-3.0
1,215,110	-		Psyr_1072	0.16	+1.1
1,215,166	-		Psyr_1072	0.21	-0.9
1,215,320	+		Psyr_1072	0.36	-0.5
1,215,320	+		Psyr_1072	0.36	-2.2
1,215,320	+		Psyr_1072	0.36	+1.9
1,215,320	+		Psyr_1072	0.36	-0.8
1,215,320	+		Psyr_1072	0.36	-2.5
1,215,320	+		Psyr_1072	0.36	+1.2
1,215,323	+		Psyr_1072	0.36	-0.3
1,215,324	-		Psyr_1072	0.37	-1.8
1,215,324	-		Psyr_1072	0.37	+0.7
1,215,332	-		Psyr_1072	0.37	+2.0
1,215,346	-		Psyr_1072	0.39	+1.0
1,215,346	-		Psyr_1072	0.39	+0.2
1,215,441	-		Psyr_1072	0.48	+3.3
1,215,464	+		Psyr_1072	0.50	+0.5
1,215,465	-		Psyr_1072	0.50	+2.7
1,215,465	-		Psyr_1072	0.50	+0.9
1,215,465	-		Psyr_1072	0.50	+0.3
1,215,531	+		Psyr_1072	0.57	+1.1
1,215,532	-		Psyr_1072	0.57	-0.6
1,215,593	+		Psyr_1072	0.63	+0.3
1,215,593	+		Psyr_1072	0.63	+2.4
1,215,593	+		Psyr_1072	0.63	+0.3
1,215,594	-		Psyr_1072	0.63	+0.9
1,215,594	-		Psyr_1072	0.63	-1.3
1,215,594	-		Psyr_1072	0.63	-0.2
1,215,594	-		Psyr_1072	0.63	-2.5
1,215,594	-		Psyr_1072	0.63	-1.6
1,215,778	+		Psyr_1072	0.81	+0.8
1,215,796	+		Psyr_1072	0.82	-0.4
1,215,796	+		Psyr_1072	0.82	+2.1
1,215,797	-		Psyr_1072	0.83	+0.4
1,215,800	+		Psyr_1072	0.83	-0.0
1,215,957	-				-1.9
1,215,967	+				+0.8
1,215,967	+				-0.0
1,215,967	+				+2.0
1,215,967	+				-2.5
1,215,967	+				-0.7
1,215,967	+				-2.3
1,215,968	-				+0.3
1,215,968	-				+2.4
1,215,968	-				+1.3
1,216,199	+		Psyr_1073	0.13	+0.6
1,216,200	-		Psyr_1073	0.13	+1.9
1,216,200	-		Psyr_1073	0.13	+0.5
1,216,200	-		Psyr_1073	0.13	-0.3
1,216,200	-		Psyr_1073	0.13	+0.3
1,216,202	+		Psyr_1073	0.13	+0.4
1,216,202	+		Psyr_1073	0.13	+0.7
1,216,266	+		Psyr_1073	0.19	+0.5
1,216,284	+		Psyr_1073	0.20	+0.5
1,216,284	+		Psyr_1073	0.20	+0.9
1,216,284	+		Psyr_1073	0.20	-0.7
1,216,284	+		Psyr_1073	0.20	+0.1
1,216,285	-		Psyr_1073	0.20	+0.8
1,216,285	-		Psyr_1073	0.20	+1.7
1,216,285	-		Psyr_1073	0.20	+0.2
1,216,285	-		Psyr_1073	0.20	-2.4
1,216,285	-		Psyr_1073	0.20	+0.6
1,216,285	-		Psyr_1073	0.20	-0.2
1,216,316	+		Psyr_1073	0.23	-0.6
1,216,425	+		Psyr_1073	0.32	+0.7
1,216,425	+		Psyr_1073	0.32	+2.4
1,216,425	+		Psyr_1073	0.32	-1.3
1,216,425	+		Psyr_1073	0.32	+2.2
1,216,426	-		Psyr_1073	0.32	+0.8
1,216,426	-		Psyr_1073	0.32	+0.8
1,216,426	-		Psyr_1073	0.32	+0.8
1,216,426	-		Psyr_1073	0.32	-1.2
1,216,426	-		Psyr_1073	0.32	+0.5
1,216,486	+		Psyr_1073	0.37	-1.1
1,216,524	+		Psyr_1073	0.40	-1.0
1,216,853	+		Psyr_1073	0.68	-3.3
1,216,854	-		Psyr_1073	0.68	-0.7
1,216,854	-		Psyr_1073	0.68	-1.6
1,216,854	-		Psyr_1073	0.68	+1.2
1,216,857	+		Psyr_1073	0.69	-2.4
1,216,857	+		Psyr_1073	0.69	-0.0
1,216,857	+		Psyr_1073	0.69	-2.5
1,216,857	+		Psyr_1073	0.69	-0.7
1,216,857	+		Psyr_1073	0.69	-2.3
1,216,857	+		Psyr_1073	0.69	+1.3
1,216,857	+		Psyr_1073	0.69	+2.1
1,216,857	+		Psyr_1073	0.69	+2.9
1,216,857	+		Psyr_1073	0.69	+3.0
1,216,857	+		Psyr_1073	0.69	-0.0
1,216,857	+		Psyr_1073	0.69	+1.4
1,216,858	-		Psyr_1073	0.69	-3.0
1,216,858	-		Psyr_1073	0.69	-0.8
1,216,858	-		Psyr_1073	0.69	+1.2
1,216,858	-		Psyr_1073	0.69	+0.9
1,216,858	-		Psyr_1073	0.69	-0.9