Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0956

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
1,089,183	+				-0.5
1,089,184	-				-1.8
1,089,185	+				+0.3
1,089,185	+				+0.8
1,089,185	+				+1.0
1,089,186	-				-3.3
1,089,186	-				+2.4
1,089,186	-				-1.6
1,089,255	-				+1.3
1,089,256	-				+4.4
1,089,289	+				-1.8
1,089,289	+				+2.6
1,089,289	+				+0.2
1,089,289	+				+0.5
1,089,289	+				-0.3
1,089,290	-				-0.8
1,089,290	-				-2.6
1,089,290	-				-1.3
1,089,291	+				-1.8
1,089,298	+				+0.8
1,089,298	+				+0.5
1,089,336	+				-1.7
1,089,336	+				-1.1
1,089,336	+				+1.6
1,089,337	-				+1.7
1,089,516	+		Psyr_0954	0.83	-1.1
1,089,516	+		Psyr_0954	0.83	-0.5
1,089,516	+		Psyr_0954	0.83	+0.0
1,089,517	-		Psyr_0954	0.84	-2.4
1,089,517	-		Psyr_0954	0.84	+3.9
1,089,635	-				+0.5
1,089,635	-				-0.6
1,089,700	+		Psyr_0955	0.12	-1.1
1,089,700	+		Psyr_0955	0.12	+0.1
1,089,700	+		Psyr_0955	0.12	-2.1
1,089,700	+		Psyr_0955	0.12	+0.1
1,089,700	+		Psyr_0955	0.12	-0.9
1,089,700	+		Psyr_0955	0.12	-1.9
1,089,700	+		Psyr_0955	0.12	+2.5
1,089,700	+		Psyr_0955	0.12	-2.5
1,089,700	+		Psyr_0955	0.12	+1.8
1,089,701	-		Psyr_0955	0.12	+0.5
1,089,701	-		Psyr_0955	0.12	+0.9
1,089,786	-		Psyr_0955	0.29	-1.6
1,089,786	-		Psyr_0955	0.29	-1.1
1,089,786	-		Psyr_0955	0.29	+0.2
1,089,786	-		Psyr_0955	0.29	+1.7
1,089,786	-		Psyr_0955	0.29	+1.7
1,089,788	+		Psyr_0955	0.29	-3.1
1,089,788	+		Psyr_0955	0.29	-0.1
1,089,788	+		Psyr_0955	0.29	-1.6
1,089,788	+		Psyr_0955	0.29	-2.2
1,089,789	-		Psyr_0955	0.29	-1.1
1,089,960	+		Psyr_0955	0.63	+0.8
1,089,960	+		Psyr_0955	0.63	-1.3
1,089,960	+		Psyr_0955	0.63	+1.3
1,089,960	+		Psyr_0955	0.63	+1.1
1,090,143	+				-1.1
1,090,143	+				+2.2
1,090,246	-				-1.5
1,090,254	+				-2.8
1,090,254	+				-0.8
1,090,287	+		Psyr_0956	0.11	-1.3
1,090,288	-		Psyr_0956	0.12	+0.7
1,090,461	+		Psyr_0956	0.25	-2.5
1,090,578	+		Psyr_0956	0.34	-0.0
1,090,578	+		Psyr_0956	0.34	-1.6
1,090,578	+		Psyr_0956	0.34	-1.5
1,090,578	+		Psyr_0956	0.34	+1.8
1,090,578	+		Psyr_0956	0.34	-1.0
1,090,579	-		Psyr_0956	0.34	-3.2
1,090,579	-		Psyr_0956	0.34	+2.5
1,090,579	-		Psyr_0956	0.34	-0.0
1,090,579	-		Psyr_0956	0.34	+1.1
1,090,639	-		Psyr_0956	0.39	-1.0
1,090,785	+		Psyr_0956	0.51	+0.8
1,090,785	+		Psyr_0956	0.51	+0.6
1,090,785	+		Psyr_0956	0.51	-1.0
1,090,789	+		Psyr_0956	0.51	+4.7
1,090,789	+		Psyr_0956	0.51	+0.7
1,090,789	+		Psyr_0956	0.51	-3.1
1,090,929	+		Psyr_0956	0.62	+1.1
1,090,929	+		Psyr_0956	0.62	-2.8
1,090,929	+		Psyr_0956	0.62	-0.5
1,090,929	+		Psyr_0956	0.62	-1.9
1,090,930	-		Psyr_0956	0.62	-1.8
1,090,930	-		Psyr_0956	0.62	+1.1
1,090,930	-		Psyr_0956	0.62	+1.1
1,090,930	-		Psyr_0956	0.62	+0.6
1,090,930	-		Psyr_0956	0.62	+2.5
1,090,930	-		Psyr_0956	0.62	-2.0
1,090,930	-		Psyr_0956	0.62	-0.2
1,090,930	-		Psyr_0956	0.62	+1.1
1,090,930	-		Psyr_0956	0.62	+2.1
1,090,930	-		Psyr_0956	0.62	+1.2
1,090,930	-		Psyr_0956	0.62	+0.0
1,090,930	-		Psyr_0956	0.62	-0.5
1,090,981	-		Psyr_0956	0.66	-1.8
1,091,017	+		Psyr_0956	0.69	+0.4
1,091,017	+		Psyr_0956	0.69	+1.0
1,091,018	-		Psyr_0956	0.69	+0.9
1,091,393	-				+0.7
1,091,393	-				-1.3
1,091,393	-				+1.1
1,091,481	+		Psyr_0957	0.10	+1.6
1,091,482	-		Psyr_0957	0.11	-0.3
1,091,515	+		Psyr_0957	0.15	-0.4
1,091,516	-		Psyr_0957	0.15	+0.3
1,091,564	-		Psyr_0957	0.21	-3.2
1,091,564	-		Psyr_0957	0.21	-2.5
1,091,655	+		Psyr_0957	0.32	-0.3
1,091,655	+		Psyr_0957	0.32	-0.8
1,091,655	+		Psyr_0957	0.32	-1.6
1,091,655	+		Psyr_0957	0.32	+1.1
1,091,655	+		Psyr_0957	0.32	+0.5
1,091,655	+		Psyr_0957	0.32	+0.5
1,091,656	-		Psyr_0957	0.32	+1.9
1,091,656	-		Psyr_0957	0.32	-1.8
1,091,656	-		Psyr_0957	0.32	+1.0
1,091,785	+		Psyr_0957	0.48	-0.8
1,091,785	+		Psyr_0957	0.48	+0.8
1,091,785	+		Psyr_0957	0.48	-0.1
1,091,785	+		Psyr_0957	0.48	-3.4
1,091,785	+		Psyr_0957	0.48	-1.6
1,091,785	+		Psyr_0957	0.48	+1.3
1,091,785	+		Psyr_0957	0.48	-0.5
1,091,785	+		Psyr_0957	0.48	-1.1
1,091,785	+		Psyr_0957	0.48	+0.1
1,091,785	+		Psyr_0957	0.48	-2.1
1,091,785	+		Psyr_0957	0.48	-1.6
1,091,785	+		Psyr_0957	0.48	+1.5
1,091,785	+		Psyr_0957	0.48	+0.8
1,091,785	+		Psyr_0957	0.48	+0.4
1,091,785	+		Psyr_0957	0.48	+2.4
1,091,785	+		Psyr_0957	0.48	+2.1
1,091,785	+		Psyr_0957	0.48	-1.1
1,091,785	+		Psyr_0957	0.48	-0.1
1,091,786	-		Psyr_0957	0.49	+0.0
1,091,786	-		Psyr_0957	0.49	+0.9
1,091,786	-		Psyr_0957	0.49	-0.6
1,091,786	-		Psyr_0957	0.49	+1.5
1,091,786	-		Psyr_0957	0.49	+0.4
1,091,786	-		Psyr_0957	0.49	-3.0
1,091,786	-		Psyr_0957	0.49	+0.7
1,091,786	-		Psyr_0957	0.49	-2.2
1,091,786	-		Psyr_0957	0.49	+1.0
1,091,786	-		Psyr_0957	0.49	-1.0
1,091,786	-		Psyr_0957	0.49	-0.9
1,091,786	-		Psyr_0957	0.49	+1.9
1,091,786	-		Psyr_0957	0.49	+3.9
1,091,786	-		Psyr_0957	0.49	-2.9
1,091,811	-		Psyr_0957	0.52	-0.1
1,092,016	+		Psyr_0957	0.77	-1.9
1,092,017	-		Psyr_0957	0.77	+0.2
1,092,017	-		Psyr_0957	0.77	-1.4
1,092,081	+		Psyr_0957	0.85	-2.6
1,092,082	-		Psyr_0957	0.86	+1.6
1,092,082	-		Psyr_0957	0.86	+0.7
1,092,082	-		Psyr_0957	0.86	-2.3
1,092,109	+		Psyr_0957	0.89	-0.8
1,092,127	+				+0.4
1,092,128	-				-0.9
1,092,181	+				+2.1
1,092,282	+				+0.8
1,092,282	+				+1.1
1,092,283	-				-1.9
1,092,348	+		Psyr_0958	0.12	-1.4
1,092,349	-		Psyr_0958	0.12	-1.3
1,092,363	+		Psyr_0958	0.14	+0.5