Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0844 and Psyr_0845 are separated by 11 nucleotides Psyr_0845 and Psyr_0846 are separated by 397 nucleotides Psyr_0846 and Psyr_0847 are separated by 2 nucleotides Psyr_0847 and Psyr_0848 are separated by 47 nucleotides
Psyr_0844: Psyr_0844 - Protein of unknown function DUF446, at 957,017 to 957,346
_0844
Psyr_0845: Psyr_0845 - conserved hypothetical protein, at 957,358 to 957,774
_0845
Psyr_0846: Psyr_0846 - acetolactate synthase, large subunit, at 958,172 to 959,896
_0846
Psyr_0847: Psyr_0847 - acetolactate synthase, small subunit, at 959,899 to 960,390
_0847
Psyr_0848: Psyr_0848 - ketol-acid reductoisomerase, at 960,438 to 961,454
_0848
Position (kb) 958
959
960 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 957.266 kb on + strand, within Psyr_0844 at 957.267 kb on - strand, within Psyr_0844 at 957.267 kb on - strand, within Psyr_0844 at 957.267 kb on - strand, within Psyr_0844 at 957.267 kb on - strand, within Psyr_0844 at 957.360 kb on - strand at 957.369 kb on - strand at 957.369 kb on - strand at 957.710 kb on + strand, within Psyr_0845 at 957.711 kb on - strand, within Psyr_0845 at 957.711 kb on - strand, within Psyr_0845 at 957.711 kb on - strand, within Psyr_0845 at 957.809 kb on + strand at 957.814 kb on + strand at 957.814 kb on + strand at 957.814 kb on + strand at 957.814 kb on + strand at 957.814 kb on + strand at 957.814 kb on + strand at 957.814 kb on + strand at 957.924 kb on + strand at 957.924 kb on + strand at 957.956 kb on - strand at 957.956 kb on - strand at 957.987 kb on + strand at 958.004 kb on + strand at 958.052 kb on + strand at 958.052 kb on + strand at 958.053 kb on - strand at 958.053 kb on - strand at 958.075 kb on + strand at 958.075 kb on + strand at 958.113 kb on - strand at 958.113 kb on - strand at 958.118 kb on + strand at 958.118 kb on + strand at 958.118 kb on + strand at 958.118 kb on + strand at 958.118 kb on + strand at 958.119 kb on - strand at 958.119 kb on - strand at 958.119 kb on - strand at 958.119 kb on - strand at 958.119 kb on - strand at 958.121 kb on + strand at 958.121 kb on + strand at 958.121 kb on + strand at 958.158 kb on + strand at 958.182 kb on + strand at 958.182 kb on + strand at 958.182 kb on + strand at 958.183 kb on - strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.234 kb on + strand at 958.235 kb on - strand at 958.235 kb on - strand at 958.235 kb on - strand at 958.235 kb on - strand at 958.235 kb on - strand at 958.235 kb on - strand at 958.235 kb on - strand at 958.235 kb on - strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.238 kb on + strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.239 kb on - strand at 958.271 kb on + strand at 958.272 kb on - strand at 958.439 kb on + strand, within Psyr_0846 at 958.439 kb on + strand, within Psyr_0846 at 958.439 kb on + strand, within Psyr_0846 at 958.439 kb on + strand, within Psyr_0846 at 958.439 kb on + strand, within Psyr_0846 at 958.440 kb on - strand, within Psyr_0846 at 958.440 kb on - strand, within Psyr_0846 at 958.440 kb on - strand, within Psyr_0846 at 958.440 kb on - strand, within Psyr_0846 at 958.486 kb on + strand, within Psyr_0846 at 958.610 kb on + strand, within Psyr_0846 at 958.610 kb on + strand, within Psyr_0846 at 958.611 kb on - strand, within Psyr_0846 at 958.611 kb on - strand, within Psyr_0846 at 958.611 kb on - strand, within Psyr_0846 at 958.611 kb on - strand, within Psyr_0846 at 958.611 kb on - strand, within Psyr_0846 at 958.691 kb on + strand, within Psyr_0846 at 958.691 kb on + strand, within Psyr_0846 at 958.691 kb on + strand, within Psyr_0846 at 958.692 kb on - strand, within Psyr_0846 at 958.798 kb on + strand, within Psyr_0846 at 958.961 kb on + strand, within Psyr_0846 at 958.961 kb on + strand, within Psyr_0846 at 958.961 kb on + strand, within Psyr_0846 at 958.961 kb on + strand, within Psyr_0846 at 958.962 kb on - strand, within Psyr_0846 at 958.962 kb on - strand, within Psyr_0846 at 958.962 kb on - strand, within Psyr_0846 at 958.969 kb on + strand, within Psyr_0846 at 959.267 kb on + strand, within Psyr_0846 at 959.345 kb on + strand, within Psyr_0846 at 959.345 kb on + strand, within Psyr_0846 at 959.345 kb on + strand, within Psyr_0846 at 959.345 kb on + strand, within Psyr_0846 at 959.345 kb on + strand, within Psyr_0846 at 959.345 kb on + strand, within Psyr_0846 at 959.345 kb on + strand, within Psyr_0846 at 959.345 kb on + strand, within Psyr_0846 at 959.345 kb on + strand, within Psyr_0846 at 959.346 kb on - strand, within Psyr_0846 at 959.346 kb on - strand, within Psyr_0846 at 959.346 kb on - strand, within Psyr_0846 at 959.346 kb on - strand, within Psyr_0846 at 959.346 kb on - strand, within Psyr_0846 at 959.346 kb on - strand, within Psyr_0846 at 959.346 kb on - strand, within Psyr_0846 at 959.346 kb on - strand, within Psyr_0846 at 959.390 kb on + strand, within Psyr_0846 at 959.390 kb on + strand, within Psyr_0846 at 959.391 kb on - strand, within Psyr_0846 at 959.391 kb on - strand, within Psyr_0846 at 959.391 kb on - strand, within Psyr_0846 at 959.391 kb on - strand, within Psyr_0846 at 959.393 kb on + strand, within Psyr_0846 at 959.393 kb on + strand, within Psyr_0846 at 959.567 kb on + strand, within Psyr_0846 at 959.568 kb on - strand, within Psyr_0846 at 959.642 kb on + strand, within Psyr_0846 at 959.642 kb on + strand, within Psyr_0846 at 959.666 kb on + strand, within Psyr_0846 at 959.666 kb on + strand, within Psyr_0846 at 959.666 kb on + strand, within Psyr_0846 at 959.666 kb on + strand, within Psyr_0846 at 959.666 kb on + strand, within Psyr_0846 at 959.666 kb on + strand, within Psyr_0846 at 959.667 kb on - strand, within Psyr_0846 at 959.667 kb on - strand, within Psyr_0846 at 959.708 kb on + strand, within Psyr_0846 at 959.709 kb on - strand, within Psyr_0846 at 959.728 kb on + strand at 959.866 kb on + strand at 959.867 kb on - strand at 959.894 kb on + strand at 959.894 kb on + strand at 959.894 kb on + strand at 959.894 kb on + strand at 959.894 kb on + strand at 959.894 kb on + strand at 959.894 kb on + strand at 959.894 kb on + strand at 959.895 kb on - strand at 959.895 kb on - strand at 959.895 kb on - strand at 959.895 kb on - strand at 959.895 kb on - strand at 959.895 kb on - strand at 959.895 kb on - strand at 959.895 kb on - strand at 959.907 kb on + strand at 959.976 kb on + strand, within Psyr_0847 at 959.976 kb on + strand, within Psyr_0847 at 959.977 kb on - strand, within Psyr_0847 at 959.977 kb on - strand, within Psyr_0847 at 959.977 kb on - strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.980 kb on + strand, within Psyr_0847 at 959.981 kb on - strand, within Psyr_0847 at 959.981 kb on - strand, within Psyr_0847 at 959.981 kb on - strand, within Psyr_0847 at 959.981 kb on - strand, within Psyr_0847 at 959.981 kb on - strand, within Psyr_0847 at 959.981 kb on - strand, within Psyr_0847 at 959.981 kb on - strand, within Psyr_0847 at 960.050 kb on + strand, within Psyr_0847 at 960.050 kb on + strand, within Psyr_0847 at 960.051 kb on - strand, within Psyr_0847 at 960.051 kb on - strand, within Psyr_0847 at 960.257 kb on - strand, within Psyr_0847 at 960.388 kb on + strand at 960.388 kb on + strand at 960.397 kb on + strand at 960.398 kb on - strand at 960.398 kb on - strand at 960.398 kb on - strand at 960.423 kb on + strand at 960.702 kb on + strand, within Psyr_0848 at 960.702 kb on + strand, within Psyr_0848 at 960.703 kb on - strand, within Psyr_0848 at 960.703 kb on - strand, within Psyr_0848 at 960.703 kb on - strand, within Psyr_0848 at 960.774 kb on + strand, within Psyr_0848 at 960.894 kb on + strand, within Psyr_0848
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 957,266 + Psyr_0844 0.75 -1.5 957,267 - Psyr_0844 0.76 +1.3 957,267 - Psyr_0844 0.76 -2.1 957,267 - Psyr_0844 0.76 +1.0 957,267 - Psyr_0844 0.76 -1.1 957,360 - +0.1 957,369 - -0.3 957,369 - -1.3 957,710 + Psyr_0845 0.84 -1.9 957,711 - Psyr_0845 0.85 +1.2 957,711 - Psyr_0845 0.85 +1.3 957,711 - Psyr_0845 0.85 +1.2 957,809 + +2.5 957,814 + -0.5 957,814 + -1.9 957,814 + +0.8 957,814 + -0.3 957,814 + +0.4 957,814 + +2.4 957,814 + -0.1 957,924 + +3.5 957,924 + -0.1 957,956 - -2.3 957,956 - -2.2 957,987 + -1.0 958,004 + -1.5 958,052 + -0.1 958,052 + -3.5 958,053 - -3.6 958,053 - -1.8 958,075 + -0.3 958,075 + -3.3 958,113 - -1.8 958,113 - -1.3 958,118 + -2.3 958,118 + +1.2 958,118 + -0.1 958,118 + +2.0 958,118 + +1.3 958,119 - +0.7 958,119 - -0.5 958,119 - -0.1 958,119 - -1.5 958,119 - -1.5 958,121 + -2.9 958,121 + +1.1 958,121 + -0.2 958,158 + -0.9 958,182 + +1.2 958,182 + -1.1 958,182 + -0.3 958,183 - -1.6 958,234 + -0.4 958,234 + -0.8 958,234 + -1.9 958,234 + -0.5 958,234 + -3.6 958,234 + -1.6 958,234 + -2.8 958,234 + -1.1 958,234 + -1.5 958,235 - -2.1 958,235 - -2.8 958,235 - -1.1 958,235 - -2.4 958,235 - -4.5 958,235 - -1.3 958,235 - -3.4 958,235 - +2.0 958,238 + -2.6 958,238 + +0.5 958,238 + -1.6 958,238 + -2.7 958,238 + -3.3 958,238 + -1.1 958,238 + -1.3 958,238 + -2.5 958,238 + -2.4 958,239 - -1.1 958,239 - +0.1 958,239 - -3.1 958,239 - -0.6 958,239 - -2.4 958,239 - -2.5 958,239 - -1.9 958,239 - -3.0 958,239 - -0.4 958,239 - -1.7 958,239 - -1.1 958,239 - -2.6 958,271 + -2.5 958,272 - -2.7 958,439 + Psyr_0846 0.15 -2.4 958,439 + Psyr_0846 0.15 -1.3 958,439 + Psyr_0846 0.15 -3.1 958,439 + Psyr_0846 0.15 -2.2 958,439 + Psyr_0846 0.15 -0.5 958,440 - Psyr_0846 0.16 -0.8 958,440 - Psyr_0846 0.16 -2.9 958,440 - Psyr_0846 0.16 -4.0 958,440 - Psyr_0846 0.16 -2.3 958,486 + Psyr_0846 0.18 -1.6 958,610 + Psyr_0846 0.25 -1.3 958,610 + Psyr_0846 0.25 -0.8 958,611 - Psyr_0846 0.25 -1.5 958,611 - Psyr_0846 0.25 -3.1 958,611 - Psyr_0846 0.25 -3.9 958,611 - Psyr_0846 0.25 -3.9 958,611 - Psyr_0846 0.25 -0.5 958,691 + Psyr_0846 0.30 -1.9 958,691 + Psyr_0846 0.30 -1.6 958,691 + Psyr_0846 0.30 -3.1 958,692 - Psyr_0846 0.30 -0.8 958,798 + Psyr_0846 0.36 -0.5 958,961 + Psyr_0846 0.46 -2.2 958,961 + Psyr_0846 0.46 -2.2 958,961 + Psyr_0846 0.46 -2.3 958,961 + Psyr_0846 0.46 -2.9 958,962 - Psyr_0846 0.46 -1.8 958,962 - Psyr_0846 0.46 -1.3 958,962 - Psyr_0846 0.46 -1.9 958,969 + Psyr_0846 0.46 -2.6 959,267 + Psyr_0846 0.63 -2.4 959,345 + Psyr_0846 0.68 -2.2 959,345 + Psyr_0846 0.68 -2.5 959,345 + Psyr_0846 0.68 -2.8 959,345 + Psyr_0846 0.68 -1.1 959,345 + Psyr_0846 0.68 -1.6 959,345 + Psyr_0846 0.68 -2.7 959,345 + Psyr_0846 0.68 -2.6 959,345 + Psyr_0846 0.68 -1.3 959,345 + Psyr_0846 0.68 -0.8 959,346 - Psyr_0846 0.68 -2.1 959,346 - Psyr_0846 0.68 -1.8 959,346 - Psyr_0846 0.68 -1.1 959,346 - Psyr_0846 0.68 -2.2 959,346 - Psyr_0846 0.68 -3.6 959,346 - Psyr_0846 0.68 -1.5 959,346 - Psyr_0846 0.68 -2.9 959,346 - Psyr_0846 0.68 -2.2 959,390 + Psyr_0846 0.71 -2.1 959,390 + Psyr_0846 0.71 -2.6 959,391 - Psyr_0846 0.71 -2.6 959,391 - Psyr_0846 0.71 -1.8 959,391 - Psyr_0846 0.71 -1.6 959,391 - Psyr_0846 0.71 -0.1 959,393 + Psyr_0846 0.71 -0.4 959,393 + Psyr_0846 0.71 -2.9 959,567 + Psyr_0846 0.81 -2.9 959,568 - Psyr_0846 0.81 -2.2 959,642 + Psyr_0846 0.85 -0.8 959,642 + Psyr_0846 0.85 -2.1 959,666 + Psyr_0846 0.87 -1.6 959,666 + Psyr_0846 0.87 -0.9 959,666 + Psyr_0846 0.87 -1.8 959,666 + Psyr_0846 0.87 -1.7 959,666 + Psyr_0846 0.87 -1.3 959,666 + Psyr_0846 0.87 -3.9 959,667 - Psyr_0846 0.87 -1.4 959,667 - Psyr_0846 0.87 -2.9 959,708 + Psyr_0846 0.89 -2.4 959,709 - Psyr_0846 0.89 -1.8 959,728 + -2.2 959,866 + -2.1 959,867 - +0.2 959,894 + -0.1 959,894 + -2.3 959,894 + -1.9 959,894 + -1.9 959,894 + -2.6 959,894 + -0.9 959,894 + -0.1 959,894 + -2.6 959,895 - -1.3 959,895 - -1.3 959,895 - -2.4 959,895 - -0.8 959,895 - +0.7 959,895 - -2.9 959,895 - -2.7 959,895 - -3.4 959,907 + -3.4 959,976 + Psyr_0847 0.16 -3.5 959,976 + Psyr_0847 0.16 -1.1 959,977 - Psyr_0847 0.16 -2.1 959,977 - Psyr_0847 0.16 -3.3 959,977 - Psyr_0847 0.16 -3.8 959,980 + Psyr_0847 0.16 -2.6 959,980 + Psyr_0847 0.16 -1.3 959,980 + Psyr_0847 0.16 -2.4 959,980 + Psyr_0847 0.16 -1.3 959,980 + Psyr_0847 0.16 -1.9 959,980 + Psyr_0847 0.16 -1.9 959,980 + Psyr_0847 0.16 -2.2 959,980 + Psyr_0847 0.16 -2.9 959,981 - Psyr_0847 0.17 -3.5 959,981 - Psyr_0847 0.17 -2.7 959,981 - Psyr_0847 0.17 +0.2 959,981 - Psyr_0847 0.17 -3.1 959,981 - Psyr_0847 0.17 -2.6 959,981 - Psyr_0847 0.17 -2.9 959,981 - Psyr_0847 0.17 -1.3 960,050 + Psyr_0847 0.31 -1.8 960,050 + Psyr_0847 0.31 -3.6 960,051 - Psyr_0847 0.31 -1.9 960,051 - Psyr_0847 0.31 -2.8 960,257 - Psyr_0847 0.73 -3.3 960,388 + -0.8 960,388 + -2.7 960,397 + +0.2 960,398 - -0.9 960,398 - -3.4 960,398 - -0.4 960,423 + -1.4 960,702 + Psyr_0848 0.26 -1.0 960,702 + Psyr_0848 0.26 -0.2 960,703 - Psyr_0848 0.26 -0.5 960,703 - Psyr_0848 0.26 -1.1 960,703 - Psyr_0848 0.26 +1.9 960,774 + Psyr_0848 0.33 +0.4 960,894 + Psyr_0848 0.45 -0.3
Or see this region's nucleotide sequence