Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0646

Experiment: apoplastic; Pepper

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_0645 and Psyr_0646 are separated by 185 nucleotidesPsyr_0646 and Psyr_0647 are separated by 32 nucleotides Psyr_0645: Psyr_0645 - 3-ketoacyl-CoA thiolase, at 732,804 to 734,081 _0645 Psyr_0646: Psyr_0646 - conserved hypothetical protein, at 734,267 to 734,545 _0646 Psyr_0647: Psyr_0647 - Protein of unknown function DUF726, at 734,578 to 735,975 _0647 Position (kb) 734 735Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 733.370 kb on - strand, within Psyr_0645at 733.370 kb on - strand, within Psyr_0645at 733.465 kb on - strand, within Psyr_0645at 733.465 kb on - strand, within Psyr_0645at 733.791 kb on + strand, within Psyr_0645at 733.829 kb on + strand, within Psyr_0645at 734.104 kb on + strandat 734.104 kb on + strandat 734.104 kb on + strandat 734.105 kb on - strandat 734.120 kb on + strandat 734.121 kb on - strandat 734.121 kb on - strandat 734.121 kb on - strandat 734.148 kb on + strandat 734.160 kb on - strandat 734.240 kb on + strandat 734.241 kb on - strandat 734.261 kb on + strandat 734.261 kb on + strandat 734.262 kb on - strandat 734.262 kb on - strandat 734.278 kb on + strandat 734.292 kb on + strandat 734.321 kb on + strand, within Psyr_0646at 734.321 kb on + strand, within Psyr_0646at 734.321 kb on + strand, within Psyr_0646at 734.321 kb on + strand, within Psyr_0646at 734.321 kb on + strand, within Psyr_0646at 734.321 kb on + strand, within Psyr_0646at 734.322 kb on - strand, within Psyr_0646at 734.322 kb on - strand, within Psyr_0646at 734.322 kb on - strand, within Psyr_0646at 734.322 kb on - strand, within Psyr_0646at 734.322 kb on - strand, within Psyr_0646at 734.322 kb on - strand, within Psyr_0646at 734.322 kb on - strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.363 kb on + strand, within Psyr_0646at 734.364 kb on - strand, within Psyr_0646at 734.364 kb on - strand, within Psyr_0646at 734.364 kb on - strand, within Psyr_0646at 734.364 kb on - strand, within Psyr_0646at 734.364 kb on - strand, within Psyr_0646at 734.364 kb on - strand, within Psyr_0646at 734.364 kb on - strand, within Psyr_0646at 734.364 kb on - strand, within Psyr_0646at 734.365 kb on + strand, within Psyr_0646at 734.365 kb on + strand, within Psyr_0646at 734.366 kb on - strand, within Psyr_0646at 734.366 kb on - strand, within Psyr_0646at 734.436 kb on + strand, within Psyr_0646at 734.436 kb on + strand, within Psyr_0646at 734.437 kb on - strand, within Psyr_0646at 734.437 kb on - strand, within Psyr_0646at 734.444 kb on + strand, within Psyr_0646at 734.444 kb on + strand, within Psyr_0646at 734.445 kb on - strand, within Psyr_0646at 734.445 kb on - strand, within Psyr_0646at 734.445 kb on - strand, within Psyr_0646at 734.445 kb on - strand, within Psyr_0646at 734.445 kb on - strand, within Psyr_0646at 734.445 kb on - strand, within Psyr_0646at 734.511 kb on + strand, within Psyr_0646at 734.698 kb on - strandat 735.050 kb on + strand, within Psyr_0647at 735.050 kb on + strand, within Psyr_0647at 735.050 kb on + strand, within Psyr_0647at 735.050 kb on + strand, within Psyr_0647at 735.050 kb on + strand, within Psyr_0647at 735.050 kb on + strand, within Psyr_0647at 735.051 kb on - strand, within Psyr_0647at 735.136 kb on + strand, within Psyr_0647at 735.137 kb on - strand, within Psyr_0647at 735.193 kb on - strand, within Psyr_0647at 735.475 kb on + strand, within Psyr_0647at 735.475 kb on + strand, within Psyr_0647at 735.475 kb on + strand, within Psyr_0647at 735.475 kb on + strand, within Psyr_0647at 735.476 kb on - strand, within Psyr_0647at 735.476 kb on - strand, within Psyr_0647at 735.476 kb on - strand, within Psyr_0647at 735.476 kb on - strand, within Psyr_0647

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction apoplastic; Pepper
remove
733,370 - Psyr_0645 0.44 +0.1
733,370 - Psyr_0645 0.44 +0.1
733,465 - Psyr_0645 0.52 -2.4
733,465 - Psyr_0645 0.52 +0.1
733,791 + Psyr_0645 0.77 -0.8
733,829 + Psyr_0645 0.80 -1.6
734,104 + -0.1
734,104 + +1.4
734,104 + +1.9
734,105 - +0.6
734,120 + -1.5
734,121 - -1.5
734,121 - -0.0
734,121 - -0.9
734,148 + +1.6
734,160 - -1.2
734,240 + -1.0
734,241 - -2.3
734,261 + -1.4
734,261 + +0.6
734,262 - -1.1
734,262 - -2.9
734,278 + -1.2
734,292 + -1.1
734,321 + Psyr_0646 0.19 -1.2
734,321 + Psyr_0646 0.19 +2.0
734,321 + Psyr_0646 0.19 +0.8
734,321 + Psyr_0646 0.19 -1.9
734,321 + Psyr_0646 0.19 -1.9
734,321 + Psyr_0646 0.19 +4.0
734,322 - Psyr_0646 0.20 -2.5
734,322 - Psyr_0646 0.20 -0.5
734,322 - Psyr_0646 0.20 +2.6
734,322 - Psyr_0646 0.20 -3.0
734,322 - Psyr_0646 0.20 -1.4
734,322 - Psyr_0646 0.20 -0.1
734,322 - Psyr_0646 0.20 -2.0
734,363 + Psyr_0646 0.34 -0.9
734,363 + Psyr_0646 0.34 +0.2
734,363 + Psyr_0646 0.34 +1.0
734,363 + Psyr_0646 0.34 +1.3
734,363 + Psyr_0646 0.34 +1.1
734,363 + Psyr_0646 0.34 +2.0
734,363 + Psyr_0646 0.34 -0.0
734,363 + Psyr_0646 0.34 -0.3
734,363 + Psyr_0646 0.34 -0.1
734,363 + Psyr_0646 0.34 +2.3
734,364 - Psyr_0646 0.35 +2.2
734,364 - Psyr_0646 0.35 +0.0
734,364 - Psyr_0646 0.35 +0.2
734,364 - Psyr_0646 0.35 -0.8
734,364 - Psyr_0646 0.35 -0.8
734,364 - Psyr_0646 0.35 -0.9
734,364 - Psyr_0646 0.35 -0.0
734,364 - Psyr_0646 0.35 +0.3
734,365 + Psyr_0646 0.35 +2.4
734,365 + Psyr_0646 0.35 -0.6
734,366 - Psyr_0646 0.35 +2.1
734,366 - Psyr_0646 0.35 -0.0
734,436 + Psyr_0646 0.61 +0.8
734,436 + Psyr_0646 0.61 +0.4
734,437 - Psyr_0646 0.61 +0.6
734,437 - Psyr_0646 0.61 +2.1
734,444 + Psyr_0646 0.63 -0.8
734,444 + Psyr_0646 0.63 +1.4
734,445 - Psyr_0646 0.64 -0.0
734,445 - Psyr_0646 0.64 +1.0
734,445 - Psyr_0646 0.64 -1.8
734,445 - Psyr_0646 0.64 -1.3
734,445 - Psyr_0646 0.64 -2.6
734,445 - Psyr_0646 0.64 -2.2
734,511 + Psyr_0646 0.87 +1.8
734,698 - +0.9
735,050 + Psyr_0647 0.34 -0.4
735,050 + Psyr_0647 0.34 -0.2
735,050 + Psyr_0647 0.34 +0.3
735,050 + Psyr_0647 0.34 -2.8
735,050 + Psyr_0647 0.34 -0.8
735,050 + Psyr_0647 0.34 +0.0
735,051 - Psyr_0647 0.34 +0.6
735,136 + Psyr_0647 0.40 +0.0
735,137 - Psyr_0647 0.40 -0.2
735,193 - Psyr_0647 0.44 -0.8
735,475 + Psyr_0647 0.64 +2.0
735,475 + Psyr_0647 0.64 +1.4
735,475 + Psyr_0647 0.64 -2.0
735,475 + Psyr_0647 0.64 +1.7
735,476 - Psyr_0647 0.64 -1.1
735,476 - Psyr_0647 0.64 -1.0
735,476 - Psyr_0647 0.64 +0.2
735,476 - Psyr_0647 0.64 +0.0

Or see this region's nucleotide sequence