Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0551 and Psyr_0552 overlap by 4 nucleotides Psyr_0552 and Psyr_0553 overlap by 4 nucleotides Psyr_0553 and Psyr_0554 are separated by 10 nucleotides
Psyr_0551: Psyr_0551 - DNA topoisomerase IV subunit B, at 622,501 to 624,405
_0551
Psyr_0552: Psyr_0552 - conserved hypothetical protein, at 624,402 to 625,379
_0552
Psyr_0553: Psyr_0553 - conserved hypothetical protein, at 625,376 to 625,897
_0553
Psyr_0554: Psyr_0554 - DNA topoisomerase IV subunit A, at 625,908 to 628,163
_0554
Position (kb) 624
625
626 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 624.407 kb on - strand at 624.632 kb on + strand, within Psyr_0552 at 624.657 kb on + strand, within Psyr_0552 at 624.657 kb on + strand, within Psyr_0552 at 624.657 kb on + strand, within Psyr_0552 at 624.657 kb on + strand, within Psyr_0552 at 624.657 kb on + strand, within Psyr_0552 at 624.713 kb on + strand, within Psyr_0552 at 624.713 kb on + strand, within Psyr_0552 at 625.098 kb on + strand, within Psyr_0552 at 625.098 kb on + strand, within Psyr_0552 at 625.098 kb on + strand, within Psyr_0552 at 625.098 kb on + strand, within Psyr_0552 at 625.099 kb on - strand, within Psyr_0552 at 625.293 kb on - strand at 625.529 kb on + strand, within Psyr_0553 at 625.529 kb on + strand, within Psyr_0553 at 625.531 kb on + strand, within Psyr_0553 at 625.531 kb on + strand, within Psyr_0553 at 625.531 kb on + strand, within Psyr_0553 at 625.531 kb on + strand, within Psyr_0553 at 625.531 kb on + strand, within Psyr_0553 at 625.531 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.533 kb on + strand, within Psyr_0553 at 625.534 kb on - strand, within Psyr_0553 at 625.534 kb on - strand, within Psyr_0553 at 625.534 kb on - strand, within Psyr_0553 at 625.534 kb on - strand, within Psyr_0553 at 625.534 kb on - strand, within Psyr_0553 at 625.534 kb on - strand, within Psyr_0553 at 625.534 kb on - strand, within Psyr_0553 at 625.534 kb on - strand, within Psyr_0553 at 625.534 kb on - strand, within Psyr_0553 at 625.534 kb on - strand, within Psyr_0553 at 625.534 kb on - strand, within Psyr_0553 at 625.534 kb on - strand, within Psyr_0553 at 625.534 kb on - strand, within Psyr_0553
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 624,407 - +0.6 624,632 + Psyr_0552 0.24 -2.3 624,657 + Psyr_0552 0.26 +0.2 624,657 + Psyr_0552 0.26 -1.4 624,657 + Psyr_0552 0.26 -1.2 624,657 + Psyr_0552 0.26 -3.6 624,657 + Psyr_0552 0.26 -0.1 624,713 + Psyr_0552 0.32 -0.4 624,713 + Psyr_0552 0.32 -1.9 625,098 + Psyr_0552 0.71 +0.5 625,098 + Psyr_0552 0.71 +0.2 625,098 + Psyr_0552 0.71 +0.4 625,098 + Psyr_0552 0.71 -1.1 625,099 - Psyr_0552 0.71 -1.6 625,293 - -2.8 625,529 + Psyr_0553 0.29 +0.9 625,529 + Psyr_0553 0.29 +0.6 625,531 + Psyr_0553 0.30 +0.2 625,531 + Psyr_0553 0.30 +0.5 625,531 + Psyr_0553 0.30 -0.0 625,531 + Psyr_0553 0.30 +1.1 625,531 + Psyr_0553 0.30 -0.7 625,531 + Psyr_0553 0.30 +0.9 625,533 + Psyr_0553 0.30 -0.0 625,533 + Psyr_0553 0.30 -2.5 625,533 + Psyr_0553 0.30 -2.1 625,533 + Psyr_0553 0.30 -0.7 625,533 + Psyr_0553 0.30 -1.2 625,533 + Psyr_0553 0.30 -1.7 625,533 + Psyr_0553 0.30 -0.2 625,533 + Psyr_0553 0.30 +1.3 625,533 + Psyr_0553 0.30 -1.1 625,533 + Psyr_0553 0.30 +0.6 625,533 + Psyr_0553 0.30 +2.5 625,533 + -1.6 625,533 + Psyr_0553 0.30 -0.0 625,533 + Psyr_0553 0.30 -0.0 625,533 + Psyr_0553 0.30 -0.3 625,533 + Psyr_0553 0.30 +0.2 625,533 + Psyr_0553 0.30 +0.7 625,533 + Psyr_0553 0.30 -0.7 625,533 + Psyr_0553 0.30 -2.6 625,533 + Psyr_0553 0.30 +2.2 625,533 + Psyr_0553 0.30 +0.6 625,533 + Psyr_0553 0.30 +3.9 625,533 + Psyr_0553 0.30 -1.8 625,534 - Psyr_0553 0.30 -0.8 625,534 - Psyr_0553 0.30 -0.2 625,534 - Psyr_0553 0.30 -0.4 625,534 - Psyr_0553 0.30 -1.8 625,534 - Psyr_0553 0.30 -3.2 625,534 - Psyr_0553 0.30 -2.4 625,534 - Psyr_0553 0.30 +0.4 625,534 - Psyr_0553 0.30 +0.9 625,534 - Psyr_0553 0.30 -0.3 625,534 - Psyr_0553 0.30 -0.0 625,534 - Psyr_0553 0.30 -0.7 625,534 - Psyr_0553 0.30 -0.8 625,534 - Psyr_0553 0.30 -1.4
Or see this region's nucleotide sequence