Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0514 and Psyr_0515 are separated by 137 nucleotides Psyr_0515 and Psyr_0516 are separated by 175 nucleotides
Psyr_0514: Psyr_0514 - Intergral membrane protein, YccS:Integral membrane protein, YccS/YhfK, at 569,076 to 571,274
_0514
Psyr_0515: Psyr_0515 - HI0933-like protein, at 571,412 to 572,590
_0515
Psyr_0516: Psyr_0516 - ATP-dependent RNA helicase DbpA, at 572,766 to 574,187
_0516
Position (kb) 571
572
573 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 570.478 kb on + strand, within Psyr_0514 at 570.478 kb on + strand, within Psyr_0514 at 570.478 kb on + strand, within Psyr_0514 at 570.479 kb on - strand, within Psyr_0514 at 570.484 kb on + strand, within Psyr_0514 at 570.529 kb on + strand, within Psyr_0514 at 570.529 kb on + strand, within Psyr_0514 at 570.529 kb on + strand, within Psyr_0514 at 570.529 kb on + strand, within Psyr_0514 at 570.530 kb on - strand, within Psyr_0514 at 570.530 kb on - strand, within Psyr_0514 at 570.852 kb on + strand, within Psyr_0514 at 570.853 kb on - strand, within Psyr_0514 at 570.853 kb on - strand, within Psyr_0514 at 570.853 kb on - strand, within Psyr_0514 at 570.853 kb on - strand, within Psyr_0514 at 570.889 kb on + strand, within Psyr_0514 at 570.889 kb on + strand, within Psyr_0514 at 570.928 kb on + strand, within Psyr_0514 at 570.928 kb on + strand, within Psyr_0514 at 571.211 kb on + strand at 571.211 kb on + strand at 571.213 kb on + strand at 571.213 kb on + strand at 571.213 kb on + strand at 571.213 kb on + strand at 571.214 kb on - strand at 571.214 kb on - strand at 571.214 kb on - strand at 571.214 kb on - strand at 571.250 kb on + strand at 571.250 kb on + strand at 571.250 kb on + strand at 571.250 kb on + strand at 571.250 kb on + strand at 571.251 kb on - strand at 571.251 kb on - strand at 571.251 kb on - strand at 571.251 kb on - strand at 571.251 kb on - strand at 571.251 kb on - strand at 571.323 kb on + strand at 571.323 kb on - strand at 571.324 kb on - strand at 571.324 kb on - strand at 571.324 kb on - strand at 571.324 kb on - strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.327 kb on + strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.328 kb on - strand at 571.348 kb on + strand at 571.348 kb on + strand at 571.348 kb on + strand at 571.348 kb on + strand at 571.349 kb on - strand at 571.349 kb on - strand at 571.349 kb on - strand at 571.349 kb on - strand at 571.349 kb on - strand at 571.349 kb on - strand at 571.349 kb on - strand at 571.370 kb on + strand at 571.398 kb on + strand at 571.419 kb on + strand at 571.419 kb on + strand at 571.419 kb on + strand at 571.419 kb on + strand at 571.419 kb on + strand at 571.419 kb on + strand at 571.419 kb on + strand at 571.419 kb on + strand at 571.419 kb on + strand at 571.419 kb on + strand at 571.420 kb on - strand at 571.420 kb on - strand at 571.420 kb on - strand at 571.420 kb on - strand at 571.420 kb on - strand at 571.434 kb on + strand at 571.434 kb on + strand at 571.435 kb on - strand at 571.671 kb on + strand, within Psyr_0515 at 571.671 kb on + strand, within Psyr_0515 at 571.672 kb on - strand, within Psyr_0515 at 571.672 kb on - strand, within Psyr_0515 at 571.672 kb on - strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.424 kb on + strand, within Psyr_0515 at 572.425 kb on - strand, within Psyr_0515 at 572.425 kb on - strand, within Psyr_0515 at 572.428 kb on + strand, within Psyr_0515 at 572.428 kb on + strand, within Psyr_0515 at 572.428 kb on + strand, within Psyr_0515 at 572.428 kb on + strand, within Psyr_0515 at 572.428 kb on + strand, within Psyr_0515 at 572.428 kb on + strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.429 kb on - strand, within Psyr_0515 at 572.570 kb on + strand at 572.570 kb on + strand at 572.570 kb on + strand at 572.571 kb on - strand at 572.571 kb on - strand at 572.571 kb on - strand at 572.644 kb on + strand at 572.644 kb on + strand at 572.645 kb on - strand at 572.645 kb on - strand at 572.645 kb on - strand at 572.645 kb on - strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.715 kb on + strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.716 kb on - strand at 572.717 kb on + strand at 572.717 kb on + strand at 572.718 kb on - strand at 572.718 kb on - strand at 572.718 kb on - strand at 572.718 kb on - strand at 572.718 kb on - strand at 572.718 kb on - strand at 572.718 kb on - strand at 572.738 kb on + strand at 572.768 kb on - strand at 572.861 kb on - strand at 573.269 kb on + strand, within Psyr_0516 at 573.270 kb on - strand, within Psyr_0516 at 573.295 kb on - strand, within Psyr_0516 at 573.438 kb on + strand, within Psyr_0516 at 573.439 kb on - strand, within Psyr_0516
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 570,478 + Psyr_0514 0.64 -0.9 570,478 + Psyr_0514 0.64 -2.9 570,478 + Psyr_0514 0.64 -0.4 570,479 - Psyr_0514 0.64 -2.4 570,484 + Psyr_0514 0.64 +1.7 570,529 + Psyr_0514 0.66 +1.8 570,529 + Psyr_0514 0.66 +0.8 570,529 + Psyr_0514 0.66 +0.8 570,529 + Psyr_0514 0.66 -2.1 570,530 - Psyr_0514 0.66 -2.9 570,530 - Psyr_0514 0.66 +0.8 570,852 + Psyr_0514 0.81 -0.4 570,853 - Psyr_0514 0.81 +0.9 570,853 - Psyr_0514 0.81 +0.4 570,853 - Psyr_0514 0.81 -0.0 570,853 - Psyr_0514 0.81 +1.5 570,889 + Psyr_0514 0.82 -0.1 570,889 + Psyr_0514 0.82 -0.0 570,928 + Psyr_0514 0.84 -0.7 570,928 + Psyr_0514 0.84 +2.7 571,211 + -4.3 571,211 + +0.3 571,213 + +0.9 571,213 + -0.4 571,213 + -0.1 571,213 + +1.2 571,214 - -2.4 571,214 - +0.4 571,214 - +1.0 571,214 - -1.7 571,250 + -2.4 571,250 + -0.0 571,250 + -1.4 571,250 + +1.6 571,250 + +1.2 571,251 - +0.5 571,251 - -1.2 571,251 - -2.3 571,251 - +1.4 571,251 - +2.5 571,251 - -1.4 571,323 + -0.8 571,323 - +1.1 571,324 - -1.0 571,324 - +0.7 571,324 - -0.7 571,324 - +1.8 571,327 + -2.0 571,327 + +1.4 571,327 + -1.2 571,327 + -0.9 571,327 + -1.9 571,327 + -0.0 571,327 + +0.6 571,327 + +1.3 571,327 + -2.8 571,327 + +0.6 571,328 - -1.4 571,328 - -2.2 571,328 - -0.5 571,328 - -0.6 571,328 - +1.2 571,328 - -0.6 571,328 - -0.0 571,328 - -1.1 571,328 - +1.8 571,328 - -0.7 571,328 - -2.0 571,328 - -3.1 571,328 - +2.1 571,328 - -0.2 571,348 + -0.6 571,348 + -0.0 571,348 + -0.1 571,348 + -0.6 571,349 - -0.5 571,349 - -1.0 571,349 - +1.1 571,349 - -0.7 571,349 - +1.0 571,349 - +0.9 571,349 - +0.3 571,370 + -0.1 571,398 + -0.5 571,419 + -1.4 571,419 + +0.4 571,419 + -2.4 571,419 + -3.5 571,419 + -0.0 571,419 + +1.0 571,419 + +0.5 571,419 + +0.7 571,419 + -2.3 571,419 + -0.0 571,420 - -1.0 571,420 - -1.9 571,420 - -0.1 571,420 - +0.9 571,420 - -0.4 571,434 + +1.2 571,434 + -2.1 571,435 - +0.6 571,671 + Psyr_0515 0.22 +1.5 571,671 + Psyr_0515 0.22 -1.2 571,672 - Psyr_0515 0.22 -1.4 571,672 - Psyr_0515 0.22 -1.0 571,672 - Psyr_0515 0.22 +0.3 572,424 + Psyr_0515 0.86 +3.4 572,424 + Psyr_0515 0.86 +0.9 572,424 + Psyr_0515 0.86 +2.4 572,424 + Psyr_0515 0.86 +0.9 572,424 + Psyr_0515 0.86 +1.3 572,424 + Psyr_0515 0.86 +1.3 572,424 + Psyr_0515 0.86 +0.3 572,424 + Psyr_0515 0.86 -1.5 572,425 - Psyr_0515 0.86 -1.2 572,425 - Psyr_0515 0.86 -1.2 572,428 + Psyr_0515 0.86 +2.1 572,428 + Psyr_0515 0.86 -2.7 572,428 + Psyr_0515 0.86 +1.5 572,428 + Psyr_0515 0.86 -0.8 572,428 + Psyr_0515 0.86 -3.0 572,428 + Psyr_0515 0.86 +1.6 572,429 - Psyr_0515 0.86 +1.3 572,429 - Psyr_0515 0.86 -0.0 572,429 - Psyr_0515 0.86 +1.9 572,429 - Psyr_0515 0.86 -0.3 572,429 - Psyr_0515 0.86 +0.7 572,429 - Psyr_0515 0.86 -0.0 572,429 - Psyr_0515 0.86 -0.8 572,429 - Psyr_0515 0.86 +2.2 572,429 - Psyr_0515 0.86 -1.6 572,570 + -3.8 572,570 + +0.6 572,570 + -0.7 572,571 - +0.4 572,571 - -2.1 572,571 - +1.6 572,644 + +0.3 572,644 + +1.7 572,645 - -0.2 572,645 - -0.3 572,645 - +0.3 572,645 - +0.3 572,715 + -0.4 572,715 + -0.2 572,715 + +0.2 572,715 + -0.0 572,715 + -1.2 572,715 + +0.7 572,715 + +2.0 572,715 + -1.4 572,715 + +0.2 572,715 + +3.9 572,715 + +0.2 572,716 - +3.1 572,716 - -2.6 572,716 - +0.4 572,716 - -1.6 572,716 - +1.5 572,716 - +0.5 572,716 - -0.3 572,716 - -1.1 572,716 - +1.6 572,716 - -0.2 572,716 - +1.5 572,716 - -1.7 572,716 - -0.5 572,716 - -1.1 572,716 - -1.0 572,716 - -2.2 572,716 - -1.7 572,716 - -0.4 572,716 - -0.0 572,717 + +0.5 572,717 + -2.8 572,718 - -1.4 572,718 - -1.5 572,718 - +0.3 572,718 - +1.6 572,718 - -1.0 572,718 - +1.3 572,718 - -1.8 572,738 + +2.2 572,768 - -1.4 572,861 - -1.0 573,269 + Psyr_0516 0.35 -0.7 573,270 - Psyr_0516 0.35 -0.5 573,295 - Psyr_0516 0.37 -0.2 573,438 + Psyr_0516 0.47 +0.8 573,439 - Psyr_0516 0.47 +1.0
Or see this region's nucleotide sequence