Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0458 and Psyr_0459 are separated by 311 nucleotides Psyr_0459 and Psyr_0460 are separated by 189 nucleotides
Psyr_0458: Psyr_0458 - Helicase, C-terminal:Type III restriction enzyme, res subunit:DEAD/DEAH box helicase, N-terminal, at 494,944 to 496,833
_0458
Psyr_0459: Psyr_0459 - 5,10-methylenetetrahydrofolate reductase, at 497,145 to 497,990
_0459
Psyr_0460: Psyr_0460 - adenosylhomocysteinase, at 498,180 to 499,589
_0460
Position (kb) 497
498 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 496.258 kb on - strand, within Psyr_0458 at 496.683 kb on + strand at 496.684 kb on - strand at 496.837 kb on + strand at 496.837 kb on + strand at 496.837 kb on + strand at 496.858 kb on + strand at 496.858 kb on + strand at 496.858 kb on + strand at 496.858 kb on + strand at 496.897 kb on - strand at 497.042 kb on + strand at 497.042 kb on + strand at 497.043 kb on - strand at 497.043 kb on - strand at 497.043 kb on - strand at 497.044 kb on + strand at 497.044 kb on + strand at 497.044 kb on + strand at 497.045 kb on - strand at 497.045 kb on - strand at 497.045 kb on - strand at 497.061 kb on + strand at 497.089 kb on + strand at 497.089 kb on + strand at 497.090 kb on - strand at 497.090 kb on - strand at 497.090 kb on - strand at 497.207 kb on - strand at 497.207 kb on - strand at 497.306 kb on - strand, within Psyr_0459 at 497.322 kb on - strand, within Psyr_0459 at 497.380 kb on + strand, within Psyr_0459 at 497.380 kb on + strand, within Psyr_0459 at 497.380 kb on + strand, within Psyr_0459 at 497.380 kb on + strand, within Psyr_0459 at 497.380 kb on + strand, within Psyr_0459 at 497.381 kb on - strand, within Psyr_0459 at 497.381 kb on - strand, within Psyr_0459 at 497.381 kb on - strand, within Psyr_0459 at 497.381 kb on - strand, within Psyr_0459 at 497.381 kb on - strand, within Psyr_0459 at 497.458 kb on + strand, within Psyr_0459 at 497.458 kb on + strand, within Psyr_0459 at 497.458 kb on + strand, within Psyr_0459 at 497.458 kb on + strand, within Psyr_0459 at 497.458 kb on + strand, within Psyr_0459 at 497.458 kb on + strand, within Psyr_0459 at 497.458 kb on + strand, within Psyr_0459 at 497.458 kb on + strand, within Psyr_0459 at 497.458 kb on + strand, within Psyr_0459 at 497.459 kb on - strand, within Psyr_0459 at 497.459 kb on - strand, within Psyr_0459 at 497.459 kb on - strand, within Psyr_0459 at 497.479 kb on + strand, within Psyr_0459 at 497.479 kb on + strand, within Psyr_0459 at 497.479 kb on + strand, within Psyr_0459 at 497.480 kb on - strand, within Psyr_0459 at 497.480 kb on - strand, within Psyr_0459 at 497.728 kb on + strand, within Psyr_0459 at 497.729 kb on - strand, within Psyr_0459 at 497.729 kb on - strand, within Psyr_0459 at 497.769 kb on + strand, within Psyr_0459 at 497.866 kb on + strand, within Psyr_0459 at 497.866 kb on + strand, within Psyr_0459 at 497.866 kb on + strand, within Psyr_0459 at 497.866 kb on + strand, within Psyr_0459 at 497.866 kb on + strand, within Psyr_0459 at 497.867 kb on - strand, within Psyr_0459 at 497.867 kb on - strand, within Psyr_0459 at 497.867 kb on - strand, within Psyr_0459 at 497.867 kb on - strand, within Psyr_0459 at 497.867 kb on - strand, within Psyr_0459 at 497.867 kb on - strand, within Psyr_0459 at 497.893 kb on + strand, within Psyr_0459 at 497.893 kb on + strand, within Psyr_0459 at 497.893 kb on + strand, within Psyr_0459 at 497.893 kb on + strand, within Psyr_0459 at 497.893 kb on + strand, within Psyr_0459 at 497.894 kb on - strand, within Psyr_0459 at 497.894 kb on - strand, within Psyr_0459 at 497.894 kb on - strand, within Psyr_0459 at 497.894 kb on - strand, within Psyr_0459 at 497.894 kb on - strand, within Psyr_0459 at 497.894 kb on - strand, within Psyr_0459 at 497.894 kb on - strand, within Psyr_0459 at 497.951 kb on + strand at 498.013 kb on + strand at 498.014 kb on - strand at 498.014 kb on - strand at 498.014 kb on - strand at 498.024 kb on + strand at 498.025 kb on - strand at 498.044 kb on + strand at 498.045 kb on - strand at 498.045 kb on - strand at 498.087 kb on + strand at 498.088 kb on - strand at 498.088 kb on - strand at 498.088 kb on - strand at 498.088 kb on - strand at 498.088 kb on - strand at 498.174 kb on + strand at 498.174 kb on + strand at 498.174 kb on + strand at 498.174 kb on + strand at 498.174 kb on + strand at 498.174 kb on + strand at 498.175 kb on - strand at 498.175 kb on - strand at 498.175 kb on - strand at 498.175 kb on - strand at 498.178 kb on + strand at 498.178 kb on + strand at 498.178 kb on + strand at 498.178 kb on + strand at 498.179 kb on - strand at 498.179 kb on - strand at 498.179 kb on - strand at 498.179 kb on - strand at 498.179 kb on - strand at 498.179 kb on - strand at 498.179 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 496,258 - Psyr_0458 0.70 +0.9 496,683 + +1.8 496,684 - -0.9 496,837 + -2.2 496,837 + -0.2 496,837 + +0.4 496,858 + -1.4 496,858 + +1.1 496,858 + -0.6 496,858 + +1.0 496,897 - -2.6 497,042 + -0.5 497,042 + +0.6 497,043 - +1.6 497,043 - +1.5 497,043 - +0.1 497,044 + -0.5 497,044 + -1.4 497,044 + -2.4 497,045 - +1.8 497,045 - -1.8 497,045 - +1.2 497,061 + +0.2 497,089 + -1.9 497,089 + +1.6 497,090 - +0.1 497,090 - -1.1 497,090 - -0.4 497,207 - -1.2 497,207 - +1.7 497,306 - Psyr_0459 0.19 -0.6 497,322 - Psyr_0459 0.21 -0.3 497,380 + Psyr_0459 0.28 -2.2 497,380 + Psyr_0459 0.28 -1.4 497,380 + Psyr_0459 0.28 +0.5 497,380 + Psyr_0459 0.28 +0.2 497,380 + Psyr_0459 0.28 +0.1 497,381 - Psyr_0459 0.28 -1.9 497,381 - Psyr_0459 0.28 -0.8 497,381 - Psyr_0459 0.28 +0.1 497,381 - Psyr_0459 0.28 +0.1 497,381 - Psyr_0459 0.28 -0.9 497,458 + Psyr_0459 0.37 -0.2 497,458 + Psyr_0459 0.37 +1.8 497,458 + Psyr_0459 0.37 +0.6 497,458 + Psyr_0459 0.37 -1.2 497,458 + Psyr_0459 0.37 -0.3 497,458 + Psyr_0459 0.37 +0.1 497,458 + Psyr_0459 0.37 -0.2 497,458 + Psyr_0459 0.37 -0.1 497,458 + Psyr_0459 0.37 -0.9 497,459 - Psyr_0459 0.37 -0.0 497,459 - Psyr_0459 0.37 +3.5 497,459 - Psyr_0459 0.37 -0.2 497,479 + Psyr_0459 0.39 +1.0 497,479 + Psyr_0459 0.39 -1.5 497,479 + Psyr_0459 0.39 -2.3 497,480 - Psyr_0459 0.40 -3.2 497,480 - Psyr_0459 0.40 +0.5 497,728 + Psyr_0459 0.69 +0.6 497,729 - Psyr_0459 0.69 -0.9 497,729 - Psyr_0459 0.69 -2.8 497,769 + Psyr_0459 0.74 -0.9 497,866 + Psyr_0459 0.85 -1.1 497,866 + Psyr_0459 0.85 -0.9 497,866 + Psyr_0459 0.85 +0.3 497,866 + Psyr_0459 0.85 -1.7 497,866 + Psyr_0459 0.85 -1.4 497,867 - Psyr_0459 0.85 +1.4 497,867 - Psyr_0459 0.85 -2.5 497,867 - Psyr_0459 0.85 -1.5 497,867 - Psyr_0459 0.85 -0.5 497,867 - Psyr_0459 0.85 -0.7 497,867 - Psyr_0459 0.85 +0.2 497,893 + Psyr_0459 0.88 -0.9 497,893 + Psyr_0459 0.88 +0.9 497,893 + Psyr_0459 0.88 -3.6 497,893 + Psyr_0459 0.88 -2.8 497,893 + Psyr_0459 0.88 -0.2 497,894 - Psyr_0459 0.89 +1.4 497,894 - Psyr_0459 0.89 +0.1 497,894 - Psyr_0459 0.89 -1.7 497,894 - Psyr_0459 0.89 -0.9 497,894 - Psyr_0459 0.89 -1.5 497,894 - Psyr_0459 0.89 +1.8 497,894 - Psyr_0459 0.89 -0.7 497,951 + +2.7 498,013 + -0.7 498,014 - -0.7 498,014 - +2.1 498,014 - +0.6 498,024 + +0.6 498,025 - +0.2 498,044 + -2.5 498,045 - +1.3 498,045 - +1.0 498,087 + +0.6 498,088 - -0.1 498,088 - -2.3 498,088 - -1.1 498,088 - -0.7 498,088 - +1.6 498,174 + -3.1 498,174 + -1.2 498,174 + +1.2 498,174 + -0.4 498,174 + -0.9 498,174 + -3.1 498,175 - +0.0 498,175 - -0.5 498,175 - +0.9 498,175 - +2.2 498,178 + -1.7 498,178 + -1.4 498,178 + +0.6 498,178 + -1.8 498,179 - +0.4 498,179 - +0.6 498,179 - +1.6 498,179 - +0.3 498,179 - -0.8 498,179 - +1.1 498,179 - +0.5
Or see this region's nucleotide sequence