Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0444 and Psyr_0445 overlap by 8 nucleotides Psyr_0445 and Psyr_0446 overlap by 4 nucleotides Psyr_0446 and Psyr_0447 overlap by 7 nucleotides Psyr_0447 and Psyr_0448 overlap by 4 nucleotides
Psyr_0444: Psyr_0444 - Malonate decarboxylase delta subunit, at 482,166 to 482,465
_0444
Psyr_0445: Psyr_0445 - malonate decarboxylase, beta subunit, at 482,458 to 483,309
_0445
Psyr_0446: Psyr_0446 - Malonate decarboxylase gamma subunit, at 483,306 to 484,106
_0446
Psyr_0447: Psyr_0447 - malonate decarboxylase subunit, putative, at 484,100 to 484,741
_0447
Psyr_0448: Psyr_0448 - Acyl transferase region, at 484,738 to 485,673
_0448
Position (kb) 483
484
485 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 482.423 kb on + strand, within Psyr_0444 at 482.971 kb on + strand, within Psyr_0445 at 482.971 kb on + strand, within Psyr_0445 at 482.972 kb on - strand, within Psyr_0445 at 483.049 kb on + strand, within Psyr_0445 at 483.050 kb on - strand, within Psyr_0445 at 483.050 kb on - strand, within Psyr_0445 at 483.050 kb on - strand, within Psyr_0445 at 483.289 kb on + strand at 483.290 kb on - strand at 483.886 kb on - strand at 483.901 kb on - strand, within Psyr_0446 at 484.012 kb on + strand, within Psyr_0446 at 484.012 kb on + strand, within Psyr_0446 at 484.012 kb on + strand, within Psyr_0446 at 484.012 kb on + strand, within Psyr_0446 at 484.013 kb on - strand, within Psyr_0446 at 484.013 kb on - strand, within Psyr_0446 at 484.298 kb on + strand, within Psyr_0447 at 484.298 kb on + strand, within Psyr_0447 at 484.309 kb on + strand, within Psyr_0447 at 484.310 kb on - strand, within Psyr_0447 at 484.978 kb on + strand, within Psyr_0448 at 484.979 kb on - strand, within Psyr_0448 at 484.979 kb on - strand, within Psyr_0448
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 482,423 + Psyr_0444 0.86 +1.0 482,971 + Psyr_0445 0.60 +0.2 482,971 + Psyr_0445 0.60 +2.8 482,972 - Psyr_0445 0.60 -2.5 483,049 + Psyr_0445 0.69 +1.4 483,050 - Psyr_0445 0.69 -1.9 483,050 - Psyr_0445 0.69 +1.6 483,050 - Psyr_0445 0.69 -2.3 483,289 + -1.4 483,290 - -0.5 483,886 - -0.4 483,901 - Psyr_0446 0.74 -1.5 484,012 + Psyr_0446 0.88 -2.2 484,012 + Psyr_0446 0.88 -2.7 484,012 + Psyr_0446 0.88 -2.5 484,012 + Psyr_0446 0.88 +2.2 484,013 - Psyr_0446 0.88 -2.1 484,013 - Psyr_0446 0.88 -1.4 484,298 + Psyr_0447 0.31 +1.2 484,298 + Psyr_0447 0.31 +1.7 484,309 + Psyr_0447 0.33 +1.5 484,310 - Psyr_0447 0.33 -0.5 484,978 + Psyr_0448 0.26 -1.2 484,979 - Psyr_0448 0.26 -1.7 484,979 - Psyr_0448 0.26 +0.5
Or see this region's nucleotide sequence