Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0375 and Psyr_0376 are separated by 39 nucleotides Psyr_0376 and Psyr_0377 are separated by 263 nucleotides
Psyr_0375: Psyr_0375 - prolyl aminopeptidase, Serine peptidase, MEROPS family S33, at 400,343 to 401,314
_0375
Psyr_0376: Psyr_0376 - D-tyrosyl-tRNA(Tyr) deacylase, at 401,354 to 401,791
_0376
Psyr_0377: Psyr_0377 - Periplasmic glucan biosynthesis protein, MdoG, at 402,055 to 403,983
_0377
Position (kb) 401
402 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 400.415 kb on + strand at 400.415 kb on + strand at 400.416 kb on - strand at 400.416 kb on - strand at 400.460 kb on - strand, within Psyr_0375 at 400.506 kb on - strand, within Psyr_0375 at 400.506 kb on - strand, within Psyr_0375 at 400.506 kb on - strand, within Psyr_0375 at 400.506 kb on - strand, within Psyr_0375 at 400.697 kb on + strand, within Psyr_0375 at 400.697 kb on + strand, within Psyr_0375 at 400.697 kb on + strand, within Psyr_0375 at 400.697 kb on + strand, within Psyr_0375 at 400.781 kb on + strand, within Psyr_0375 at 400.781 kb on + strand, within Psyr_0375 at 400.814 kb on + strand, within Psyr_0375 at 400.814 kb on + strand, within Psyr_0375 at 400.814 kb on + strand, within Psyr_0375 at 400.815 kb on - strand, within Psyr_0375 at 400.815 kb on - strand, within Psyr_0375 at 400.815 kb on - strand, within Psyr_0375 at 400.826 kb on + strand, within Psyr_0375 at 400.826 kb on + strand, within Psyr_0375 at 400.826 kb on + strand, within Psyr_0375 at 400.826 kb on + strand, within Psyr_0375 at 400.827 kb on - strand, within Psyr_0375 at 400.827 kb on - strand, within Psyr_0375 at 400.827 kb on - strand, within Psyr_0375 at 401.040 kb on - strand, within Psyr_0375 at 401.040 kb on - strand, within Psyr_0375 at 401.040 kb on - strand, within Psyr_0375 at 401.133 kb on - strand, within Psyr_0375 at 401.133 kb on - strand, within Psyr_0375 at 401.353 kb on + strand at 401.353 kb on + strand at 401.353 kb on + strand at 401.353 kb on + strand at 401.353 kb on + strand at 401.353 kb on + strand at 401.354 kb on - strand at 401.354 kb on - strand at 401.354 kb on - strand at 401.354 kb on - strand at 401.354 kb on - strand at 401.354 kb on - strand at 401.354 kb on - strand at 401.433 kb on + strand, within Psyr_0376 at 401.433 kb on + strand, within Psyr_0376 at 401.434 kb on - strand, within Psyr_0376 at 401.451 kb on + strand, within Psyr_0376 at 401.452 kb on - strand, within Psyr_0376 at 401.483 kb on - strand, within Psyr_0376 at 401.675 kb on + strand, within Psyr_0376 at 401.712 kb on + strand, within Psyr_0376 at 401.754 kb on + strand at 401.785 kb on + strand at 401.785 kb on + strand at 401.785 kb on + strand at 401.785 kb on + strand at 401.785 kb on + strand at 401.785 kb on + strand at 401.785 kb on + strand at 401.786 kb on - strand at 401.789 kb on + strand at 401.789 kb on + strand at 401.789 kb on + strand at 401.789 kb on + strand at 401.789 kb on + strand at 401.789 kb on + strand at 401.789 kb on + strand at 401.789 kb on + strand at 401.789 kb on + strand at 401.789 kb on + strand at 401.789 kb on + strand at 401.789 kb on + strand at 401.789 kb on + strand at 401.789 kb on + strand at 401.790 kb on - strand at 401.790 kb on - strand at 401.790 kb on - strand at 401.790 kb on - strand at 401.790 kb on - strand at 401.790 kb on - strand at 401.790 kb on - strand at 401.790 kb on - strand at 401.790 kb on - strand at 401.790 kb on - strand at 401.790 kb on - strand at 401.790 kb on - strand at 401.794 kb on + strand at 401.794 kb on + strand at 401.795 kb on - strand at 401.807 kb on + strand at 401.807 kb on + strand at 401.807 kb on + strand at 401.807 kb on + strand at 401.807 kb on + strand at 401.808 kb on - strand at 401.808 kb on - strand at 401.853 kb on + strand at 401.853 kb on + strand at 401.853 kb on + strand at 401.853 kb on + strand at 401.853 kb on + strand at 401.854 kb on - strand at 401.854 kb on - strand at 401.965 kb on - strand at 402.106 kb on - strand at 402.106 kb on - strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.134 kb on + strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.135 kb on - strand at 402.183 kb on - strand at 402.346 kb on + strand, within Psyr_0377 at 402.347 kb on - strand, within Psyr_0377 at 402.347 kb on - strand, within Psyr_0377 at 402.421 kb on + strand, within Psyr_0377 at 402.421 kb on + strand, within Psyr_0377 at 402.421 kb on + strand, within Psyr_0377 at 402.422 kb on - strand, within Psyr_0377 at 402.422 kb on - strand, within Psyr_0377 at 402.565 kb on + strand, within Psyr_0377 at 402.596 kb on - strand, within Psyr_0377 at 402.596 kb on - strand, within Psyr_0377 at 402.596 kb on - strand, within Psyr_0377
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 400,415 + -1.5 400,415 + +2.4 400,416 - -1.3 400,416 - -1.7 400,460 - Psyr_0375 0.12 -0.1 400,506 - Psyr_0375 0.17 +1.5 400,506 - Psyr_0375 0.17 -1.8 400,506 - Psyr_0375 0.17 -1.5 400,506 - Psyr_0375 0.17 -0.9 400,697 + Psyr_0375 0.36 +1.2 400,697 + Psyr_0375 0.36 +0.8 400,697 + Psyr_0375 0.36 -2.8 400,697 + Psyr_0375 0.36 +1.3 400,781 + Psyr_0375 0.45 +0.1 400,781 + Psyr_0375 0.45 -1.2 400,814 + Psyr_0375 0.48 -3.4 400,814 + Psyr_0375 0.48 -1.8 400,814 + Psyr_0375 0.48 +0.7 400,815 - Psyr_0375 0.49 +0.1 400,815 - Psyr_0375 0.49 -2.5 400,815 - Psyr_0375 0.49 -0.3 400,826 + Psyr_0375 0.50 -1.5 400,826 + Psyr_0375 0.50 +0.3 400,826 + Psyr_0375 0.50 -0.7 400,826 + Psyr_0375 0.50 -1.7 400,827 - Psyr_0375 0.50 -0.1 400,827 - Psyr_0375 0.50 +0.4 400,827 - Psyr_0375 0.50 +0.8 401,040 - Psyr_0375 0.72 +0.1 401,040 - Psyr_0375 0.72 +2.7 401,040 - Psyr_0375 0.72 -2.1 401,133 - Psyr_0375 0.81 +0.1 401,133 - Psyr_0375 0.81 -0.5 401,353 + -0.5 401,353 + -1.0 401,353 + -2.4 401,353 + -2.4 401,353 + +2.9 401,353 + -0.2 401,354 - -0.1 401,354 - +2.2 401,354 - +0.1 401,354 - +2.6 401,354 - -1.3 401,354 - +1.0 401,354 - +1.2 401,433 + Psyr_0376 0.18 +0.6 401,433 + Psyr_0376 0.18 -3.1 401,434 - Psyr_0376 0.18 +1.9 401,451 + Psyr_0376 0.22 -0.2 401,452 - Psyr_0376 0.22 -1.7 401,483 - Psyr_0376 0.29 -0.4 401,675 + Psyr_0376 0.73 -2.3 401,712 + Psyr_0376 0.82 -3.4 401,754 + -0.2 401,785 + +0.1 401,785 + -1.3 401,785 + +0.3 401,785 + +2.5 401,785 + +1.6 401,785 + +0.1 401,785 + +2.3 401,786 - +2.8 401,789 + +0.9 401,789 + -0.4 401,789 + -1.7 401,789 + -1.4 401,789 + -1.6 401,789 + -0.1 401,789 + -2.5 401,789 + -0.7 401,789 + -1.2 401,789 + -0.4 401,789 + -3.5 401,789 + -1.7 401,789 + -0.1 401,789 + -3.1 401,790 - -0.4 401,790 - +1.6 401,790 - -3.1 401,790 - +0.8 401,790 - -1.4 401,790 - +0.1 401,790 - +0.8 401,790 - -1.2 401,790 - +0.3 401,790 - +0.2 401,790 - -0.6 401,790 - -0.9 401,794 + +2.0 401,794 + -0.5 401,795 - +0.4 401,807 + +0.8 401,807 + +4.1 401,807 + +1.9 401,807 + -2.5 401,807 + +0.2 401,808 - -0.7 401,808 - +0.3 401,853 + -0.6 401,853 + -0.2 401,853 + +0.8 401,853 + +0.4 401,853 + -0.2 401,854 - -0.9 401,854 - -0.4 401,965 - +0.1 402,106 - -2.5 402,106 - -0.6 402,134 + -2.1 402,134 + +1.5 402,134 + -3.1 402,134 + -0.5 402,134 + +0.2 402,134 + -1.2 402,134 + +0.2 402,134 + -2.7 402,134 + -2.9 402,134 + -2.4 402,134 + -1.7 402,134 + -1.6 402,134 + -1.1 402,134 + -2.1 402,134 + +0.1 402,134 + -0.1 402,134 + -1.5 402,134 + -0.5 402,134 + -2.2 402,135 - +0.6 402,135 - -2.0 402,135 - +1.9 402,135 - -2.3 402,135 - +0.5 402,135 - -1.7 402,135 - -0.1 402,135 - +0.1 402,135 - -2.1 402,135 - -1.9 402,135 - -3.5 402,135 - -0.8 402,135 - +0.6 402,135 - -0.3 402,135 - +0.4 402,135 - -0.5 402,135 - +0.1 402,135 - -2.3 402,135 - +1.7 402,135 - -3.2 402,183 - +2.0 402,346 + Psyr_0377 0.15 -1.7 402,347 - Psyr_0377 0.15 -0.2 402,347 - Psyr_0377 0.15 -2.7 402,421 + Psyr_0377 0.19 -1.2 402,421 + Psyr_0377 0.19 -3.2 402,421 + Psyr_0377 0.19 -1.5 402,422 - Psyr_0377 0.19 -0.7 402,422 - Psyr_0377 0.19 -0.4 402,565 + Psyr_0377 0.26 -0.5 402,596 - Psyr_0377 0.28 -0.2 402,596 - Psyr_0377 0.28 -1.1 402,596 - Psyr_0377 0.28 -0.6
Or see this region's nucleotide sequence