Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0246 and Psyr_0247 are separated by 43 nucleotides Psyr_0247 and Psyr_0248 are separated by 69 nucleotides Psyr_0248 and Psyr_0249 are separated by 141 nucleotides
Psyr_0246: Psyr_0246 - aminomethyltransferase, at 259,665 to 260,747
_0246
Psyr_0247: Psyr_0247 - glycine cleavage system H protein, at 260,791 to 261,177
_0247
Psyr_0248: Psyr_0248 - conserved hypothetical protein, at 261,247 to 261,567
_0248
Psyr_0249: Psyr_0249 - type II secretion system protein E:General secretory system II, protein E, N-terminal, at 261,709 to 263,493
_0249
Position (kb) 261
262 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 260.368 kb on - strand, within Psyr_0246 at 260.454 kb on - strand, within Psyr_0246 at 260.557 kb on + strand, within Psyr_0246 at 260.557 kb on + strand, within Psyr_0246 at 260.557 kb on + strand, within Psyr_0246 at 260.557 kb on + strand, within Psyr_0246 at 260.557 kb on + strand, within Psyr_0246 at 260.557 kb on + strand, within Psyr_0246 at 260.557 kb on + strand, within Psyr_0246 at 260.558 kb on - strand, within Psyr_0246 at 260.558 kb on - strand, within Psyr_0246 at 260.558 kb on - strand, within Psyr_0246 at 260.558 kb on - strand, within Psyr_0246 at 260.558 kb on - strand, within Psyr_0246 at 260.558 kb on - strand, within Psyr_0246 at 260.558 kb on - strand, within Psyr_0246 at 260.597 kb on + strand, within Psyr_0246 at 260.609 kb on + strand, within Psyr_0246 at 260.609 kb on + strand, within Psyr_0246 at 260.609 kb on + strand, within Psyr_0246 at 260.610 kb on - strand, within Psyr_0246 at 260.610 kb on - strand, within Psyr_0246 at 260.610 kb on - strand, within Psyr_0246 at 260.610 kb on - strand, within Psyr_0246 at 260.745 kb on + strand at 260.745 kb on + strand at 260.746 kb on - strand at 260.750 kb on + strand at 260.750 kb on + strand at 260.750 kb on + strand at 260.750 kb on + strand at 260.788 kb on + strand at 260.788 kb on + strand at 260.788 kb on + strand at 260.788 kb on + strand at 260.788 kb on + strand at 260.789 kb on - strand at 260.789 kb on - strand at 260.789 kb on - strand at 260.799 kb on + strand at 260.998 kb on - strand, within Psyr_0247 at 261.001 kb on + strand, within Psyr_0247 at 261.001 kb on + strand, within Psyr_0247 at 261.001 kb on + strand, within Psyr_0247 at 261.001 kb on + strand, within Psyr_0247 at 261.001 kb on + strand, within Psyr_0247 at 261.001 kb on + strand, within Psyr_0247 at 261.001 kb on + strand, within Psyr_0247 at 261.001 kb on + strand, within Psyr_0247 at 261.002 kb on - strand, within Psyr_0247 at 261.002 kb on - strand, within Psyr_0247 at 261.002 kb on - strand, within Psyr_0247 at 261.002 kb on - strand, within Psyr_0247 at 261.154 kb on + strand at 261.248 kb on + strand at 261.248 kb on + strand at 261.248 kb on + strand at 261.248 kb on + strand at 261.248 kb on + strand at 261.249 kb on - strand at 261.249 kb on - strand at 261.449 kb on + strand, within Psyr_0248 at 261.449 kb on + strand, within Psyr_0248 at 261.449 kb on + strand, within Psyr_0248 at 261.450 kb on - strand, within Psyr_0248 at 261.450 kb on - strand, within Psyr_0248 at 261.575 kb on + strand at 261.575 kb on + strand at 261.576 kb on - strand at 261.576 kb on - strand at 261.576 kb on - strand at 261.611 kb on + strand at 261.611 kb on + strand at 261.611 kb on + strand at 261.611 kb on + strand at 261.612 kb on - strand at 261.612 kb on - strand at 261.612 kb on - strand at 261.612 kb on - strand at 261.624 kb on + strand at 261.624 kb on + strand at 261.624 kb on + strand at 261.624 kb on + strand at 261.624 kb on + strand at 261.624 kb on + strand at 261.624 kb on + strand at 261.625 kb on - strand at 261.625 kb on - strand at 261.625 kb on - strand at 261.625 kb on - strand at 261.625 kb on - strand at 261.625 kb on - strand at 261.625 kb on - strand at 261.657 kb on + strand at 261.756 kb on + strand at 261.757 kb on - strand at 261.757 kb on - strand at 261.757 kb on - strand at 261.757 kb on - strand at 261.900 kb on - strand, within Psyr_0249 at 262.106 kb on + strand, within Psyr_0249 at 262.107 kb on - strand, within Psyr_0249 at 262.255 kb on - strand, within Psyr_0249 at 262.415 kb on + strand, within Psyr_0249 at 262.416 kb on - strand, within Psyr_0249 at 262.416 kb on - strand, within Psyr_0249 at 262.416 kb on - strand, within Psyr_0249 at 262.416 kb on - strand, within Psyr_0249 at 262.416 kb on - strand, within Psyr_0249 at 262.461 kb on + strand, within Psyr_0249 at 262.461 kb on + strand, within Psyr_0249 at 262.461 kb on + strand, within Psyr_0249 at 262.462 kb on - strand, within Psyr_0249 at 262.546 kb on + strand, within Psyr_0249 at 262.546 kb on + strand, within Psyr_0249 at 262.547 kb on - strand, within Psyr_0249 at 262.547 kb on - strand, within Psyr_0249 at 262.547 kb on - strand, within Psyr_0249
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 260,368 - Psyr_0246 0.65 +1.3 260,454 - Psyr_0246 0.73 +2.7 260,557 + Psyr_0246 0.82 -0.9 260,557 + Psyr_0246 0.82 -2.9 260,557 + Psyr_0246 0.82 -0.3 260,557 + Psyr_0246 0.82 -0.9 260,557 + Psyr_0246 0.82 -0.1 260,557 + Psyr_0246 0.82 +0.2 260,557 + Psyr_0246 0.82 -1.3 260,558 - Psyr_0246 0.82 -0.9 260,558 - Psyr_0246 0.82 -0.3 260,558 - Psyr_0246 0.82 +0.1 260,558 - Psyr_0246 0.82 -1.1 260,558 - Psyr_0246 0.82 +0.1 260,558 - Psyr_0246 0.82 -0.3 260,558 - Psyr_0246 0.82 +2.4 260,597 + Psyr_0246 0.86 -0.0 260,609 + Psyr_0246 0.87 -1.3 260,609 + Psyr_0246 0.87 -1.3 260,609 + Psyr_0246 0.87 +1.0 260,610 - Psyr_0246 0.87 +0.2 260,610 - Psyr_0246 0.87 -0.1 260,610 - Psyr_0246 0.87 +0.3 260,610 - Psyr_0246 0.87 +1.5 260,745 + +0.9 260,745 + -1.4 260,746 - -1.3 260,750 + -2.2 260,750 + -0.2 260,750 + +0.4 260,750 + -0.6 260,788 + +0.5 260,788 + -0.9 260,788 + +1.1 260,788 + -1.3 260,788 + +0.5 260,789 - +1.3 260,789 - +0.9 260,789 - -0.8 260,799 + -0.6 260,998 - Psyr_0247 0.53 -1.3 261,001 + Psyr_0247 0.54 -2.7 261,001 + Psyr_0247 0.54 +0.8 261,001 + Psyr_0247 0.54 +0.6 261,001 + Psyr_0247 0.54 -0.0 261,001 + Psyr_0247 0.54 +0.5 261,001 + Psyr_0247 0.54 +1.9 261,001 + Psyr_0247 0.54 -1.6 261,001 + Psyr_0247 0.54 -1.5 261,002 - Psyr_0247 0.55 -0.3 261,002 - Psyr_0247 0.55 -1.1 261,002 - Psyr_0247 0.55 +0.7 261,002 - Psyr_0247 0.55 -1.1 261,154 + -0.9 261,248 + -0.9 261,248 + +1.1 261,248 + -1.6 261,248 + +2.3 261,248 + -0.4 261,249 - +1.4 261,249 - -1.7 261,449 + Psyr_0248 0.63 -0.5 261,449 + Psyr_0248 0.63 -1.9 261,449 + Psyr_0248 0.63 -1.6 261,450 - Psyr_0248 0.63 -0.3 261,450 - Psyr_0248 0.63 -0.7 261,575 + -0.0 261,575 + +2.1 261,576 - -1.1 261,576 - +2.1 261,576 - -1.8 261,611 + +2.5 261,611 + +0.3 261,611 + +2.1 261,611 + -0.6 261,612 - +2.9 261,612 - +1.2 261,612 - +0.8 261,612 - -1.1 261,624 + +1.0 261,624 + -1.2 261,624 + -2.1 261,624 + +0.7 261,624 + +0.1 261,624 + -0.1 261,624 + +1.7 261,625 - +1.4 261,625 - -1.6 261,625 - -0.8 261,625 - +1.2 261,625 - -0.4 261,625 - -2.1 261,625 - -0.5 261,657 + +1.1 261,756 + -1.3 261,757 - -1.7 261,757 - +0.4 261,757 - +1.6 261,757 - +0.4 261,900 - Psyr_0249 0.11 +1.0 262,106 + Psyr_0249 0.22 +2.0 262,107 - Psyr_0249 0.22 +0.2 262,255 - Psyr_0249 0.31 -2.7 262,415 + Psyr_0249 0.40 -1.5 262,416 - Psyr_0249 0.40 -2.2 262,416 - Psyr_0249 0.40 -1.1 262,416 - Psyr_0249 0.40 +3.0 262,416 - Psyr_0249 0.40 -0.1 262,416 - Psyr_0249 0.40 -3.0 262,461 + Psyr_0249 0.42 -2.3 262,461 + Psyr_0249 0.42 +0.9 262,461 + Psyr_0249 0.42 +2.4 262,462 - Psyr_0249 0.42 -0.8 262,546 + Psyr_0249 0.47 +2.0 262,546 + Psyr_0249 0.47 -3.6 262,547 - Psyr_0249 0.47 +2.7 262,547 - Psyr_0249 0.47 -0.3 262,547 - Psyr_0249 0.47 +4.1
Or see this region's nucleotide sequence