Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0187 and Psyr_0188 are separated by 98 nucleotides Psyr_0188 and Psyr_0189 are separated by 242 nucleotides Psyr_0189 and Psyr_0190 are separated by 33 nucleotides Psyr_0190 and Psyr_0191 are separated by 417 nucleotides
Psyr_0187: Psyr_0187 - conserved hypothetical protein, at 199,549 to 199,875
_0187
Psyr_0188: Psyr_0188 - Protein of unknown function UPF0047, at 199,974 to 200,399
_0188
Psyr_0189: Psyr_0189 - ammonium transporter, at 200,642 to 201,979
_0189
Psyr_0190: Psyr_0190 - nitrogen regulatory protein P-II, at 202,013 to 202,351
_0190
Psyr_0191: Psyr_0191 - Protein of unknown function DUF526, at 202,769 to 203,044
_0191
Position (kb) 200
201
202 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 199.854 kb on + strand at 199.854 kb on + strand at 199.854 kb on + strand at 199.857 kb on + strand at 199.858 kb on - strand at 199.858 kb on - strand at 199.880 kb on + strand at 199.880 kb on + strand at 199.880 kb on + strand at 199.880 kb on + strand at 199.880 kb on + strand at 199.881 kb on - strand at 199.881 kb on - strand at 199.881 kb on - strand at 199.905 kb on + strand at 199.905 kb on + strand at 199.905 kb on + strand at 199.906 kb on - strand at 199.906 kb on - strand at 199.906 kb on - strand at 199.909 kb on + strand at 199.909 kb on + strand at 199.909 kb on + strand at 199.909 kb on + strand at 199.910 kb on - strand at 199.910 kb on - strand at 199.910 kb on - strand at 199.910 kb on - strand at 199.910 kb on - strand at 199.910 kb on - strand at 199.911 kb on + strand at 199.912 kb on - strand at 199.975 kb on + strand at 199.976 kb on - strand at 200.044 kb on + strand, within Psyr_0188 at 200.044 kb on + strand, within Psyr_0188 at 200.044 kb on + strand, within Psyr_0188 at 200.044 kb on + strand, within Psyr_0188 at 200.048 kb on + strand, within Psyr_0188 at 200.048 kb on + strand, within Psyr_0188 at 200.048 kb on + strand, within Psyr_0188 at 200.048 kb on + strand, within Psyr_0188 at 200.048 kb on + strand, within Psyr_0188 at 200.049 kb on - strand, within Psyr_0188 at 200.049 kb on - strand, within Psyr_0188 at 200.049 kb on - strand, within Psyr_0188 at 200.049 kb on - strand, within Psyr_0188 at 200.049 kb on - strand, within Psyr_0188 at 200.049 kb on - strand, within Psyr_0188 at 200.049 kb on - strand, within Psyr_0188 at 200.224 kb on - strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.267 kb on + strand, within Psyr_0188 at 200.268 kb on - strand, within Psyr_0188 at 200.268 kb on - strand, within Psyr_0188 at 200.268 kb on - strand, within Psyr_0188 at 200.268 kb on - strand, within Psyr_0188 at 200.268 kb on - strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.280 kb on + strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.281 kb on - strand, within Psyr_0188 at 200.331 kb on + strand, within Psyr_0188 at 200.332 kb on - strand, within Psyr_0188 at 200.332 kb on - strand, within Psyr_0188 at 200.399 kb on + strand at 200.399 kb on + strand at 200.399 kb on + strand at 200.399 kb on + strand at 200.400 kb on - strand at 200.400 kb on - strand at 200.400 kb on - strand at 200.430 kb on - strand at 200.430 kb on - strand at 200.461 kb on + strand at 200.574 kb on + strand at 200.574 kb on + strand at 200.574 kb on + strand at 200.575 kb on - strand at 200.575 kb on - strand at 200.575 kb on - strand at 200.577 kb on - strand at 200.577 kb on - strand at 200.577 kb on - strand at 200.643 kb on + strand at 200.643 kb on + strand at 200.644 kb on - strand at 200.644 kb on - strand at 200.644 kb on - strand at 200.769 kb on + strand at 200.769 kb on + strand at 200.769 kb on + strand at 200.769 kb on + strand at 200.769 kb on + strand at 200.770 kb on - strand at 200.770 kb on - strand at 200.934 kb on + strand, within Psyr_0189 at 201.094 kb on + strand, within Psyr_0189 at 201.259 kb on - strand, within Psyr_0189 at 201.314 kb on + strand, within Psyr_0189 at 201.326 kb on + strand, within Psyr_0189 at 201.326 kb on + strand, within Psyr_0189 at 201.326 kb on + strand, within Psyr_0189 at 201.326 kb on + strand, within Psyr_0189 at 201.327 kb on - strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.352 kb on + strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.353 kb on - strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.356 kb on + strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.357 kb on - strand, within Psyr_0189 at 201.445 kb on - strand, within Psyr_0189 at 201.464 kb on - strand, within Psyr_0189 at 201.521 kb on + strand, within Psyr_0189 at 201.521 kb on + strand, within Psyr_0189 at 201.521 kb on + strand, within Psyr_0189 at 201.635 kb on - strand, within Psyr_0189 at 201.930 kb on - strand at 201.979 kb on + strand at 201.979 kb on + strand at 201.980 kb on - strand at 201.980 kb on - strand at 202.014 kb on + strand at 202.015 kb on - strand at 202.019 kb on - strand at 202.411 kb on - strand at 202.432 kb on - strand at 202.432 kb on - strand at 202.551 kb on + strand at 202.551 kb on + strand at 202.551 kb on + strand at 202.552 kb on - strand at 202.560 kb on - strand at 202.587 kb on - strand at 202.598 kb on - strand at 202.637 kb on + strand at 202.638 kb on - strand at 202.638 kb on - strand at 202.638 kb on - strand at 202.648 kb on + strand at 202.648 kb on + strand at 202.691 kb on + strand at 202.722 kb on + strand at 202.722 kb on + strand at 202.722 kb on + strand at 202.722 kb on + strand at 202.722 kb on + strand at 202.723 kb on - strand at 202.723 kb on - strand at 202.723 kb on - strand at 202.723 kb on - strand at 202.723 kb on - strand at 202.736 kb on + strand at 202.736 kb on + strand at 202.736 kb on + strand at 202.737 kb on - strand at 202.765 kb on - strand at 202.765 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 199,854 + -0.6 199,854 + +0.7 199,854 + -0.5 199,857 + -2.5 199,858 - -0.9 199,858 - +0.5 199,880 + -0.2 199,880 + -0.2 199,880 + +3.5 199,880 + -2.6 199,880 + -1.8 199,881 - +2.2 199,881 - +1.9 199,881 - +0.1 199,905 + -1.6 199,905 + +1.5 199,905 + -1.1 199,906 - +0.1 199,906 - +1.7 199,906 - +1.5 199,909 + +1.2 199,909 + +0.9 199,909 + -3.6 199,909 + -2.0 199,910 - -1.6 199,910 - +3.0 199,910 - -0.5 199,910 - -1.4 199,910 - +0.3 199,910 - -2.1 199,911 + -0.5 199,912 - +3.3 199,975 + -1.5 199,976 - +0.2 200,044 + Psyr_0188 0.16 +0.7 200,044 + Psyr_0188 0.16 -0.3 200,044 + Psyr_0188 0.16 -2.0 200,044 + Psyr_0188 0.16 +1.3 200,048 + Psyr_0188 0.17 +1.3 200,048 + Psyr_0188 0.17 +2.0 200,048 + Psyr_0188 0.17 -0.6 200,048 + Psyr_0188 0.17 +2.6 200,048 + Psyr_0188 0.17 +0.1 200,049 - Psyr_0188 0.18 +1.0 200,049 - Psyr_0188 0.18 -1.8 200,049 - Psyr_0188 0.18 +0.5 200,049 - Psyr_0188 0.18 +2.8 200,049 - Psyr_0188 0.18 -1.5 200,049 - Psyr_0188 0.18 +0.4 200,049 - Psyr_0188 0.18 -0.4 200,224 - Psyr_0188 0.59 +3.0 200,267 + Psyr_0188 0.69 +3.2 200,267 + Psyr_0188 0.69 -2.0 200,267 + Psyr_0188 0.69 +0.3 200,267 + Psyr_0188 0.69 +1.0 200,267 + Psyr_0188 0.69 -0.6 200,267 + Psyr_0188 0.69 -1.8 200,267 + Psyr_0188 0.69 +3.4 200,267 + Psyr_0188 0.69 +0.5 200,267 + Psyr_0188 0.69 -1.3 200,268 - Psyr_0188 0.69 -0.9 200,268 - Psyr_0188 0.69 +2.4 200,268 - Psyr_0188 0.69 -2.5 200,268 - Psyr_0188 0.69 +0.3 200,268 - Psyr_0188 0.69 -0.1 200,280 + Psyr_0188 0.72 +1.4 200,280 + Psyr_0188 0.72 -0.3 200,280 + Psyr_0188 0.72 -1.3 200,280 + Psyr_0188 0.72 -0.9 200,280 + Psyr_0188 0.72 -0.9 200,280 + Psyr_0188 0.72 +1.7 200,280 + Psyr_0188 0.72 +3.4 200,280 + Psyr_0188 0.72 +2.2 200,280 + Psyr_0188 0.72 +0.7 200,280 + Psyr_0188 0.72 +1.4 200,280 + Psyr_0188 0.72 +3.1 200,280 + Psyr_0188 0.72 +0.8 200,280 + Psyr_0188 0.72 -0.2 200,280 + Psyr_0188 0.72 +1.3 200,281 - Psyr_0188 0.72 -1.4 200,281 - Psyr_0188 0.72 +0.1 200,281 - Psyr_0188 0.72 -1.1 200,281 - Psyr_0188 0.72 +1.7 200,281 - Psyr_0188 0.72 -0.2 200,281 - Psyr_0188 0.72 -0.8 200,281 - Psyr_0188 0.72 +0.3 200,281 - Psyr_0188 0.72 +0.1 200,281 - Psyr_0188 0.72 -1.1 200,281 - Psyr_0188 0.72 +0.1 200,281 - Psyr_0188 0.72 -0.5 200,281 - Psyr_0188 0.72 -1.1 200,281 - -0.3 200,281 - Psyr_0188 0.72 -0.8 200,281 - Psyr_0188 0.72 -1.5 200,281 - Psyr_0188 0.72 +0.7 200,281 - Psyr_0188 0.72 +1.0 200,281 - Psyr_0188 0.72 -0.2 200,281 - Psyr_0188 0.72 +0.5 200,331 + Psyr_0188 0.84 +1.2 200,332 - Psyr_0188 0.84 +0.2 200,332 - Psyr_0188 0.84 +1.9 200,399 + +2.7 200,399 + -3.4 200,399 + +1.3 200,399 + +0.1 200,400 - +1.2 200,400 - +2.1 200,400 - -0.6 200,430 - -0.6 200,430 - -0.3 200,461 + -1.1 200,574 + +0.7 200,574 + -1.5 200,574 + +1.7 200,575 - +0.4 200,575 - -1.9 200,575 - +0.4 200,577 - -0.9 200,577 - -1.8 200,577 - -0.2 200,643 + -1.2 200,643 + -1.3 200,644 - -1.8 200,644 - +1.0 200,644 - +1.6 200,769 + +1.7 200,769 + -0.3 200,769 + -2.8 200,769 + -2.8 200,769 + +1.0 200,770 - -0.6 200,770 - +1.4 200,934 + Psyr_0189 0.22 -1.6 201,094 + Psyr_0189 0.34 +2.9 201,259 - Psyr_0189 0.46 -1.3 201,314 + Psyr_0189 0.50 +0.6 201,326 + Psyr_0189 0.51 -0.9 201,326 + Psyr_0189 0.51 +0.9 201,326 + Psyr_0189 0.51 +0.4 201,326 + Psyr_0189 0.51 +0.1 201,327 - Psyr_0189 0.51 -0.7 201,352 + Psyr_0189 0.53 -3.2 201,352 + Psyr_0189 0.53 -0.3 201,352 + Psyr_0189 0.53 +1.1 201,352 + Psyr_0189 0.53 +0.4 201,352 + Psyr_0189 0.53 -1.5 201,352 + Psyr_0189 0.53 +0.4 201,352 + Psyr_0189 0.53 +1.0 201,352 + Psyr_0189 0.53 -0.1 201,352 + Psyr_0189 0.53 +1.0 201,352 + Psyr_0189 0.53 -2.2 201,352 + Psyr_0189 0.53 -0.9 201,352 + Psyr_0189 0.53 -0.9 201,353 - Psyr_0189 0.53 -2.5 201,353 - Psyr_0189 0.53 -0.3 201,353 - Psyr_0189 0.53 -1.3 201,353 - Psyr_0189 0.53 +1.2 201,353 - Psyr_0189 0.53 -1.0 201,353 - Psyr_0189 0.53 -0.3 201,353 - Psyr_0189 0.53 +0.9 201,353 - Psyr_0189 0.53 -2.6 201,353 - Psyr_0189 0.53 -3.4 201,356 + Psyr_0189 0.53 +1.7 201,356 + Psyr_0189 0.53 +1.1 201,356 + Psyr_0189 0.53 -0.1 201,356 + Psyr_0189 0.53 +0.1 201,356 + Psyr_0189 0.53 -0.9 201,356 + Psyr_0189 0.53 -0.0 201,356 + Psyr_0189 0.53 +1.0 201,356 + Psyr_0189 0.53 -1.6 201,356 + Psyr_0189 0.53 +0.1 201,356 + Psyr_0189 0.53 -2.3 201,356 + Psyr_0189 0.53 -2.5 201,357 - Psyr_0189 0.53 -1.5 201,357 - Psyr_0189 0.53 -1.0 201,357 - Psyr_0189 0.53 -2.4 201,357 - Psyr_0189 0.53 -1.3 201,357 - Psyr_0189 0.53 +0.7 201,357 - Psyr_0189 0.53 -1.6 201,357 - Psyr_0189 0.53 +1.4 201,357 - Psyr_0189 0.53 -1.4 201,357 - Psyr_0189 0.53 +1.3 201,357 - Psyr_0189 0.53 -3.8 201,357 - Psyr_0189 0.53 +0.6 201,357 - Psyr_0189 0.53 -0.9 201,357 - Psyr_0189 0.53 -1.1 201,357 - Psyr_0189 0.53 -0.1 201,445 - Psyr_0189 0.60 +1.4 201,464 - Psyr_0189 0.61 -2.2 201,521 + Psyr_0189 0.66 +0.4 201,521 + Psyr_0189 0.66 -2.2 201,521 + Psyr_0189 0.66 +0.1 201,635 - Psyr_0189 0.74 +0.7 201,930 - +0.1 201,979 + +1.7 201,979 + +1.3 201,980 - +1.4 201,980 - +1.1 202,014 + +0.5 202,015 - -0.6 202,019 - -1.6 202,411 - -1.6 202,432 - +0.4 202,432 - -0.1 202,551 + -2.0 202,551 + -2.7 202,551 + +1.0 202,552 - -0.9 202,560 - +1.7 202,587 - +4.0 202,598 - +0.1 202,637 + -2.8 202,638 - -0.9 202,638 - -2.8 202,638 - -0.6 202,648 + +0.6 202,648 + -0.9 202,691 + -0.4 202,722 + +3.4 202,722 + -1.8 202,722 + +2.6 202,722 + +3.9 202,722 + +1.1 202,723 - +0.3 202,723 - -1.9 202,723 - -2.6 202,723 - +0.5 202,723 - -1.3 202,736 + +1.5 202,736 + +1.4 202,736 + -0.8 202,737 - -1.6 202,765 - +0.1 202,765 - +1.3
Or see this region's nucleotide sequence