Experiment: apoplastic; Pepper
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0159 and Psyr_0160 are separated by 534 nucleotides Psyr_0160 and Psyr_0161 are separated by 298 nucleotides
Psyr_0159: Psyr_0159 - HAD-superfamily hydrolase, subfamily IA, variant 2, at 173,555 to 174,223
_0159
Psyr_0160: Psyr_0160 - GCN5-related N-acetyltransferase, at 174,758 to 175,615
_0160
Psyr_0161: Psyr_0161 - Protein of unknown function DUF861, at 175,914 to 176,627
_0161
Position (kb) 174
175
176 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 173.782 kb on + strand, within Psyr_0159 at 173.782 kb on + strand, within Psyr_0159 at 173.784 kb on + strand, within Psyr_0159 at 173.784 kb on + strand, within Psyr_0159 at 173.784 kb on + strand, within Psyr_0159 at 173.785 kb on - strand, within Psyr_0159 at 173.785 kb on - strand, within Psyr_0159 at 173.961 kb on + strand, within Psyr_0159 at 173.962 kb on - strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.964 kb on + strand, within Psyr_0159 at 173.965 kb on - strand, within Psyr_0159 at 173.965 kb on - strand, within Psyr_0159 at 173.965 kb on - strand, within Psyr_0159 at 173.965 kb on - strand, within Psyr_0159 at 173.965 kb on - strand, within Psyr_0159 at 173.965 kb on - strand, within Psyr_0159 at 173.965 kb on - strand, within Psyr_0159 at 173.965 kb on - strand, within Psyr_0159 at 174.042 kb on + strand, within Psyr_0159 at 174.043 kb on - strand, within Psyr_0159 at 174.078 kb on + strand, within Psyr_0159 at 174.079 kb on - strand, within Psyr_0159 at 174.183 kb on + strand at 174.196 kb on + strand at 174.197 kb on - strand at 174.197 kb on - strand at 174.319 kb on + strand at 174.319 kb on + strand at 174.320 kb on - strand at 174.320 kb on - strand at 174.320 kb on - strand at 174.348 kb on + strand at 174.349 kb on - strand at 174.452 kb on - strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.547 kb on + strand at 174.548 kb on - strand at 174.548 kb on - strand at 174.548 kb on - strand at 174.548 kb on - strand at 174.548 kb on - strand at 174.548 kb on - strand at 174.548 kb on - strand at 174.548 kb on - strand at 174.548 kb on - strand at 174.549 kb on + strand at 174.549 kb on + strand at 174.549 kb on + strand at 174.549 kb on + strand at 174.549 kb on + strand at 174.550 kb on - strand at 174.550 kb on - strand at 174.550 kb on - strand at 174.550 kb on - strand at 174.550 kb on - strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.551 kb on + strand at 174.552 kb on - strand at 174.552 kb on - strand at 174.552 kb on - strand at 174.552 kb on - strand at 174.552 kb on - strand at 174.552 kb on - strand at 174.552 kb on - strand at 174.552 kb on - strand at 174.611 kb on + strand at 174.611 kb on + strand at 174.611 kb on + strand at 174.618 kb on + strand at 174.618 kb on + strand at 174.619 kb on - strand at 174.619 kb on - strand at 174.699 kb on + strand at 174.699 kb on + strand at 174.699 kb on + strand at 174.699 kb on + strand at 174.700 kb on - strand at 174.700 kb on - strand at 174.700 kb on - strand at 174.700 kb on - strand at 174.723 kb on + strand at 174.723 kb on + strand at 174.724 kb on - strand at 174.831 kb on + strand at 174.831 kb on + strand at 175.182 kb on + strand, within Psyr_0160 at 175.182 kb on + strand, within Psyr_0160 at 175.183 kb on - strand, within Psyr_0160 at 175.449 kb on - strand, within Psyr_0160 at 175.449 kb on - strand, within Psyr_0160 at 175.449 kb on - strand, within Psyr_0160 at 175.458 kb on + strand, within Psyr_0160 at 175.458 kb on + strand, within Psyr_0160 at 175.458 kb on + strand, within Psyr_0160 at 175.459 kb on - strand, within Psyr_0160 at 175.459 kb on - strand, within Psyr_0160 at 175.459 kb on - strand, within Psyr_0160 at 175.459 kb on - strand, within Psyr_0160 at 175.459 kb on - strand, within Psyr_0160 at 175.462 kb on + strand, within Psyr_0160 at 175.463 kb on - strand, within Psyr_0160 at 175.463 kb on - strand, within Psyr_0160 at 175.463 kb on - strand, within Psyr_0160 at 175.671 kb on + strand at 175.693 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.695 kb on + strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.696 kb on - strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.699 kb on + strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.700 kb on - strand at 175.720 kb on + strand at 175.721 kb on - strand at 175.752 kb on + strand at 175.752 kb on + strand at 175.753 kb on - strand at 175.851 kb on + strand at 175.851 kb on + strand at 175.851 kb on + strand at 175.851 kb on + strand at 175.851 kb on + strand at 175.851 kb on + strand at 175.851 kb on + strand at 175.851 kb on + strand at 175.852 kb on - strand at 175.852 kb on - strand at 175.852 kb on - strand at 175.852 kb on - strand at 175.854 kb on - strand at 176.097 kb on + strand, within Psyr_0161 at 176.104 kb on - strand, within Psyr_0161 at 176.104 kb on - strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.216 kb on + strand, within Psyr_0161 at 176.217 kb on - strand, within Psyr_0161 at 176.217 kb on - strand, within Psyr_0161 at 176.598 kb on + strand at 176.598 kb on + strand at 176.598 kb on + strand at 176.598 kb on + strand at 176.598 kb on + strand at 176.598 kb on + strand at 176.598 kb on + strand at 176.599 kb on - strand at 176.599 kb on - strand at 176.614 kb on - strand at 176.614 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction apoplastic; Pepper remove 173,782 + Psyr_0159 0.34 -1.3 173,782 + Psyr_0159 0.34 +0.7 173,784 + Psyr_0159 0.34 -2.4 173,784 + Psyr_0159 0.34 -1.7 173,784 + Psyr_0159 0.34 -0.6 173,785 - Psyr_0159 0.34 -0.8 173,785 - Psyr_0159 0.34 +2.3 173,961 + Psyr_0159 0.61 -2.2 173,962 - Psyr_0159 0.61 -0.1 173,964 + Psyr_0159 0.61 +2.3 173,964 + Psyr_0159 0.61 +2.6 173,964 + Psyr_0159 0.61 -1.2 173,964 + Psyr_0159 0.61 -2.2 173,964 + Psyr_0159 0.61 -1.3 173,964 + Psyr_0159 0.61 -1.6 173,964 + Psyr_0159 0.61 -2.6 173,964 + Psyr_0159 0.61 +2.1 173,964 + Psyr_0159 0.61 -0.6 173,964 + Psyr_0159 0.61 -2.8 173,965 - Psyr_0159 0.61 -1.5 173,965 - Psyr_0159 0.61 -2.3 173,965 - Psyr_0159 0.61 +0.7 173,965 - Psyr_0159 0.61 -0.9 173,965 - Psyr_0159 0.61 -0.6 173,965 - Psyr_0159 0.61 -2.3 173,965 - Psyr_0159 0.61 -0.6 173,965 - Psyr_0159 0.61 -1.8 174,042 + Psyr_0159 0.73 -0.4 174,043 - Psyr_0159 0.73 -2.4 174,078 + Psyr_0159 0.78 +1.7 174,079 - Psyr_0159 0.78 +0.9 174,183 + -1.3 174,196 + -0.9 174,197 - -1.3 174,197 - -0.1 174,319 + -0.1 174,319 + -0.4 174,320 - +0.5 174,320 - -0.9 174,320 - -2.0 174,348 + -1.2 174,349 - +1.0 174,452 - -3.7 174,547 + +1.5 174,547 + -3.2 174,547 + +0.3 174,547 + -0.4 174,547 + +0.0 174,547 + -0.7 174,547 + +1.3 174,547 + +1.9 174,547 + -1.6 174,547 + -0.2 174,547 + -0.6 174,548 - -0.1 174,548 - -0.9 174,548 - +1.2 174,548 - +0.8 174,548 - -3.2 174,548 - -0.7 174,548 - +0.1 174,548 - -2.1 174,548 - +0.1 174,549 + +0.9 174,549 + -0.4 174,549 + -3.7 174,549 + -0.1 174,549 + +0.3 174,550 - -0.1 174,550 - +1.5 174,550 - +1.2 174,550 - +1.0 174,550 - +3.2 174,551 + +1.8 174,551 + +2.5 174,551 + -2.8 174,551 + +2.7 174,551 + -0.2 174,551 + +0.1 174,551 + +2.3 174,551 + -0.9 174,551 + +2.2 174,551 + +3.4 174,551 + -0.8 174,551 + -0.7 174,552 - -0.9 174,552 - -2.0 174,552 - -2.2 174,552 - +0.1 174,552 - -1.6 174,552 - -3.0 174,552 - -1.6 174,552 - -1.0 174,611 + -1.5 174,611 + +4.6 174,611 + +1.9 174,618 + -1.0 174,618 + +0.0 174,619 - -0.8 174,619 - +1.0 174,699 + +0.8 174,699 + +0.6 174,699 + -0.3 174,699 + -3.0 174,700 - +1.3 174,700 - -0.2 174,700 - +1.8 174,700 - -0.5 174,723 + +0.7 174,723 + -0.9 174,724 - -1.3 174,831 + +0.5 174,831 + -2.5 175,182 + Psyr_0160 0.49 +2.0 175,182 + Psyr_0160 0.49 +2.0 175,183 - Psyr_0160 0.50 +0.6 175,449 - Psyr_0160 0.81 +1.6 175,449 - Psyr_0160 0.81 -0.4 175,449 - Psyr_0160 0.81 +0.9 175,458 + Psyr_0160 0.82 -1.0 175,458 + Psyr_0160 0.82 +0.9 175,458 + Psyr_0160 0.82 +1.8 175,459 - Psyr_0160 0.82 +1.8 175,459 - Psyr_0160 0.82 -0.3 175,459 - Psyr_0160 0.82 -2.4 175,459 - Psyr_0160 0.82 +0.1 175,459 - Psyr_0160 0.82 +1.9 175,462 + Psyr_0160 0.82 +0.8 175,463 - Psyr_0160 0.82 -1.5 175,463 - Psyr_0160 0.82 -0.5 175,463 - Psyr_0160 0.82 -0.6 175,671 + +1.5 175,693 + -0.6 175,695 + +0.5 175,695 + -0.0 175,695 + +0.8 175,695 + -2.0 175,695 + -2.4 175,695 + -2.3 175,695 + -2.5 175,695 + +1.3 175,695 + +1.3 175,695 + +2.4 175,695 + +0.4 175,695 + -0.4 175,695 + +0.8 175,696 - +1.4 175,696 - +0.4 175,696 - -1.0 175,696 - -2.2 175,696 - -0.5 175,696 - -2.2 175,696 - +0.3 175,696 - +1.4 175,696 - +0.6 175,696 - -1.4 175,696 - +0.1 175,696 - -3.1 175,696 - +1.4 175,696 - -1.4 175,696 - +1.3 175,696 - +1.2 175,696 - -0.4 175,699 + +0.6 175,699 + -0.9 175,699 + -0.6 175,699 + -0.9 175,699 + -0.3 175,699 + -0.6 175,699 + +1.0 175,699 + +0.2 175,699 + -2.4 175,699 + -1.9 175,699 + -3.3 175,699 + +1.9 175,699 + +0.1 175,699 + +1.1 175,699 + +1.1 175,699 + -1.3 175,699 + -0.0 175,699 + +0.5 175,699 + +1.2 175,699 + +1.7 175,699 + -0.7 175,699 + +1.4 175,699 + -2.2 175,699 + -2.0 175,700 - -1.1 175,700 - +1.4 175,700 - +2.0 175,700 - +2.2 175,700 - -0.4 175,700 - -2.4 175,700 - -2.1 175,700 - -2.6 175,700 - +0.5 175,700 - +0.1 175,700 - -0.8 175,700 - +1.3 175,700 - +1.0 175,700 - +1.5 175,700 - -2.8 175,700 - +0.1 175,700 - +1.6 175,700 - +1.4 175,700 - -0.9 175,700 - -3.0 175,700 - +0.9 175,700 - +0.9 175,720 + -0.0 175,721 - -2.0 175,752 + +1.3 175,752 + +0.8 175,753 - +1.8 175,851 + -0.5 175,851 + -3.1 175,851 + -2.3 175,851 + -2.5 175,851 + -0.3 175,851 + +0.6 175,851 + +1.8 175,851 + +0.0 175,852 - +0.2 175,852 - +0.3 175,852 - -2.1 175,852 - -1.3 175,854 - +1.6 176,097 + Psyr_0161 0.26 +1.5 176,104 - Psyr_0161 0.27 +1.5 176,104 - Psyr_0161 0.27 +2.0 176,212 + Psyr_0161 0.42 +1.8 176,212 + Psyr_0161 0.42 +1.7 176,212 + Psyr_0161 0.42 -0.4 176,212 + Psyr_0161 0.42 -0.6 176,212 + Psyr_0161 0.42 +1.1 176,212 + Psyr_0161 0.42 +1.7 176,212 + Psyr_0161 0.42 -2.1 176,212 + Psyr_0161 0.42 +0.8 176,212 + Psyr_0161 0.42 +1.3 176,212 + Psyr_0161 0.42 +1.2 176,212 + Psyr_0161 0.42 +1.9 176,212 + Psyr_0161 0.42 +2.1 176,212 + Psyr_0161 0.42 +1.1 176,213 - Psyr_0161 0.42 -2.6 176,213 - Psyr_0161 0.42 -1.4 176,213 - Psyr_0161 0.42 -0.6 176,213 - Psyr_0161 0.42 +0.1 176,213 - Psyr_0161 0.42 -1.6 176,213 - Psyr_0161 0.42 -2.6 176,216 + Psyr_0161 0.42 -1.1 176,217 - Psyr_0161 0.42 +0.9 176,217 - Psyr_0161 0.42 -0.5 176,598 + -0.8 176,598 + +0.5 176,598 + -3.1 176,598 + -1.5 176,598 + +2.8 176,598 + +2.0 176,598 + +2.2 176,599 - +1.4 176,599 - +2.8 176,614 - +1.5 176,614 - -0.4
Or see this region's nucleotide sequence