Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_0100

Experiment: apoplastic; Pepper

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	apoplastic; Pepper
111,444	+		Psyr_0099	0.53	+0.8
111,512	-		Psyr_0099	0.86	+1.0
111,523	+				+0.2
111,527	+				-2.1
111,543	+				-2.2
111,581	+				-0.7
111,582	-				+0.3
111,590	-				+0.2
111,624	-				+1.3
111,712	-				-0.7
111,716	+				+2.0
111,716	+				-2.3
111,717	-				-2.0
111,717	-				+1.7
111,717	-				-2.0
111,717	-				-3.9
111,756	-				+1.1
111,801	+				+3.3
111,801	+				+1.4
111,801	+				-0.7
111,801	+				+1.0
111,801	+				-1.7
111,802	-				+0.3
111,802	-				+0.1
111,802	-				-0.9
111,802	-				+4.1
111,905	-				+0.9
111,906	+				+1.4
111,906	+				+0.8
111,906	+				+2.5
111,906	+				-1.7
111,906	+				+1.1
111,907	-				+3.2
111,907	-				+1.0
111,908	+				-2.4
111,908	+				+0.7
111,909	-				-2.9
111,910	+				+1.2
111,910	+				-0.6
111,910	+				-1.7
111,910	+				-2.1
111,911	-				-0.1
111,911	-				+1.6
111,911	-				-1.6
111,911	-				-1.3
111,914	+				+0.6
111,914	+				+0.7
111,915	-				-2.1
111,915	-				+0.9
111,915	-				-0.7
111,916	+				-1.4
111,916	+				+0.9
111,917	-				-2.7
111,917	-				-2.7
111,917	-				+1.5
111,917	-				-0.9
111,960	-				-1.0
111,973	+				-2.1
111,973	+				-1.1
111,974	-				-0.3
111,997	-				-1.5
111,997	-				-3.2
112,021	-				-1.3
112,115	+				+2.6
112,147	-				-1.1
112,173	+				-1.9
112,173	+				-3.6
112,173	+				+0.4
112,522	+		Psyr_0100	0.16	-0.3
112,522	+		Psyr_0100	0.16	-2.4
112,522	+		Psyr_0100	0.16	+0.3
112,523	-		Psyr_0100	0.16	-2.0
112,527	-		Psyr_0100	0.17	-1.9
112,527	-		Psyr_0100	0.17	+0.3
112,531	-		Psyr_0100	0.18	-0.9
112,711	+		Psyr_0100	0.52	-1.1
112,711	+		Psyr_0100	0.52	-2.9
112,712	-		Psyr_0100	0.52	+2.6
112,720	+		Psyr_0100	0.53	+1.9
112,770	+		Psyr_0100	0.63	+1.7
112,770	+		Psyr_0100	0.63	-2.3
112,770	+		Psyr_0100	0.63	+0.4
112,772	+		Psyr_0100	0.63	-3.1
112,772	+		Psyr_0100	0.63	+0.9
112,772	+		Psyr_0100	0.63	-0.7
112,772	+		Psyr_0100	0.63	+0.3
112,772	+		Psyr_0100	0.63	-1.9
112,772	+		Psyr_0100	0.63	+1.3
112,772	+		Psyr_0100	0.63	-0.3
112,772	+		Psyr_0100	0.63	-1.3
112,773	-		Psyr_0100	0.63	-0.6
112,773	-		Psyr_0100	0.63	+0.1
112,773	-		Psyr_0100	0.63	-0.8
112,773	-		Psyr_0100	0.63	+0.0
112,773	-		Psyr_0100	0.63	-0.3
112,862	+		Psyr_0100	0.80	+0.8
112,875	+		Psyr_0100	0.82	+2.4
112,931	-				-0.1
112,968	+				-0.6
112,968	+				+0.8
112,968	+				-3.3
112,968	+				-1.4
112,968	+				+0.7
112,968	+				+1.4
112,968	+				-0.0
112,968	+				-1.1
112,968	+				+0.5
112,968	+				-1.1
112,968	+				-1.3
112,968	+				-1.9
112,968	+				+0.7
112,969	-				+1.3
112,969	-				-2.0
112,969	-				-2.7
112,969	-				-0.1
112,969	-				+1.1
112,969	-				+1.2
112,969	-				+2.1
112,969	-				+0.6
112,969	-				-1.7
112,969	-				-0.3
112,994	+				+0.5
112,994	+				-0.8
112,995	-				-2.5
112,996	+				-0.3
112,996	+				-1.1
112,996	+				+0.9
112,997	-				+1.0
112,997	-				+0.1
113,070	+		Psyr_0101	0.17	+2.3
113,070	+		Psyr_0101	0.17	+0.0
113,071	-		Psyr_0101	0.17	-1.5
113,071	-		Psyr_0101	0.17	-0.2
113,072	+		Psyr_0101	0.17	-1.2
113,072	+		Psyr_0101	0.17	-0.0
113,072	+		Psyr_0101	0.17	-1.5
113,072	+		Psyr_0101	0.17	+0.1
113,072	+		Psyr_0101	0.17	-0.7
113,072	+		Psyr_0101	0.17	+0.4
113,072	+		Psyr_0101	0.17	+1.4
113,073	-		Psyr_0101	0.17	-0.2
113,073	-		Psyr_0101	0.17	+1.8
113,073	-		Psyr_0101	0.17	+2.8
113,073	-		Psyr_0101	0.17	-0.9
113,073	-		Psyr_0101	0.17	+2.4
113,073	-		Psyr_0101	0.17	-0.3
113,073	-		Psyr_0101	0.17	+0.3
113,073	-		Psyr_0101	0.17	-1.5
113,093	+		Psyr_0101	0.21	+0.3
113,093	+		Psyr_0101	0.21	-1.2
113,094	-		Psyr_0101	0.21	-2.1
113,131	+		Psyr_0101	0.29	-1.1
113,131	+		Psyr_0101	0.29	-0.7
113,131	+		Psyr_0101	0.29	-1.0
113,131	+		Psyr_0101	0.29	+1.3
113,132	-		Psyr_0101	0.29	-2.4
113,166	+		Psyr_0101	0.36	-1.9
113,166	+		Psyr_0101	0.36	+0.4
113,185	+		Psyr_0101	0.40	+1.0
113,185	+		Psyr_0101	0.40	+1.6
113,186	-		Psyr_0101	0.40	+1.3
113,186	-		Psyr_0101	0.40	+1.0
113,196	-		Psyr_0101	0.42	-2.1
113,325	+		Psyr_0101	0.67	+0.3
113,326	-				+0.1
113,392	+		Psyr_0101	0.81	-0.9
113,392	+		Psyr_0101	0.81	-1.6
113,472	-				+1.1
113,472	-				-1.0
113,472	-				+0.7
113,493	+				-0.1
113,516	-				-2.6
113,523	-				-2.7
113,534	+				-0.5
113,534	+				+0.1
113,535	-				+1.4
113,535	-				+0.7
113,535	-				-0.9
113,654	-				+2.6
113,735	+				-2.1
113,736	-				-0.3
113,737	+				+1.3
113,737	+				-1.5
113,737	+				-0.3
113,737	+				-0.3
113,737	+				-0.6
113,737	+				+1.7
113,737	+				+0.8
113,737	+				+0.4
113,738	-				+1.2
113,738	-				-1.8
113,738	-				+1.7
113,751	+				+0.4
113,751	+				+1.9
113,755	+				+0.7
113,755	+				+2.4
113,755	+				-0.7
113,755	+				-2.4
113,755	+				-1.2
113,755	+				+2.6
113,755	+				-1.7
113,755	+				-0.5
113,755	+				+1.7
113,755	+				+0.1
113,755	+				-2.9
113,755	+				+0.9
113,755	+				-2.1
113,755	+				-2.0
113,755	+				-0.0
113,756	-				-0.1
113,756	-				+0.7
113,756	-				-0.6
113,756	-				+0.6
113,756	-				+0.5
113,756	-				-2.1
113,756	-				+2.5
113,756	-				+1.5
113,756	-				+0.7
113,756	-				-0.4
113,756	-				+0.3
113,793	+				-2.1
113,793	+				+0.0
113,793	+				+0.5
113,794	-				-1.8
113,804	-				-1.3
113,875	+				-0.8
113,875	+				-0.1
113,876	-				-2.0
113,876	-				+1.5
113,876	-				+0.0
113,876	-				-0.7
113,876	-				-1.7
113,876	-				+1.0
113,963	+				+3.3
113,964	-				+1.8