Experiment: Nickel (II) chloride 0.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_5756 and Pf6N2E2_5757 are separated by 953 nucleotides Pf6N2E2_5757 and Pf6N2E2_5758 are separated by 10 nucleotides Pf6N2E2_5758 and Pf6N2E2_5759 are separated by 80 nucleotides
Pf6N2E2_5756 - Glutamate synthase [NADPH] large chain (EC 1.4.1.13), at 6,569,229 to 6,569,453
_5756
Pf6N2E2_5757 - hypothetical protein, at 6,570,407 to 6,570,595
_5757
Pf6N2E2_5758 - FIG00957314: hypothetical protein, at 6,570,606 to 6,570,857
_5758
Pf6N2E2_5759 - DNA recombination protein RmuC, at 6,570,938 to 6,572,431
_5759
Position (kb)
6570
6571 Strain fitness (log2 ratio)
-1
0
1
2 at 6569.423 kb on + strand, within Pf6N2E2_5756 at 6569.457 kb on - strand at 6569.483 kb on + strand at 6569.484 kb on - strand at 6569.501 kb on - strand at 6569.576 kb on + strand at 6569.576 kb on + strand at 6569.577 kb on - strand at 6569.577 kb on - strand at 6569.577 kb on - strand at 6569.577 kb on - strand at 6569.578 kb on + strand at 6569.578 kb on + strand at 6569.579 kb on - strand at 6569.579 kb on - strand at 6569.579 kb on - strand at 6569.579 kb on - strand at 6569.579 kb on - strand at 6569.579 kb on - strand at 6569.579 kb on - strand at 6569.579 kb on - strand at 6569.579 kb on - strand at 6569.579 kb on - strand at 6569.605 kb on + strand at 6569.606 kb on - strand at 6569.609 kb on + strand at 6569.609 kb on + strand at 6569.609 kb on + strand at 6569.610 kb on - strand at 6569.610 kb on - strand at 6569.610 kb on - strand at 6569.610 kb on - strand at 6569.613 kb on + strand at 6569.613 kb on + strand at 6569.613 kb on + strand at 6569.613 kb on + strand at 6569.613 kb on + strand at 6569.614 kb on - strand at 6569.614 kb on - strand at 6569.614 kb on - strand at 6569.614 kb on - strand at 6569.614 kb on - strand at 6569.614 kb on - strand at 6569.614 kb on - strand at 6569.614 kb on - strand at 6569.700 kb on - strand at 6569.755 kb on + strand at 6569.862 kb on + strand at 6569.862 kb on + strand at 6569.863 kb on - strand at 6569.863 kb on - strand at 6569.866 kb on - strand at 6569.922 kb on + strand at 6569.938 kb on - strand at 6570.089 kb on + strand at 6570.089 kb on + strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.090 kb on - strand at 6570.198 kb on + strand at 6570.198 kb on + strand at 6570.198 kb on + strand at 6570.198 kb on + strand at 6570.198 kb on + strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.199 kb on - strand at 6570.216 kb on + strand at 6570.216 kb on + strand at 6570.217 kb on - strand at 6570.446 kb on + strand, within Pf6N2E2_5757 at 6570.496 kb on + strand, within Pf6N2E2_5757 at 6570.497 kb on - strand, within Pf6N2E2_5757 at 6570.497 kb on - strand, within Pf6N2E2_5757 at 6570.519 kb on - strand, within Pf6N2E2_5757 at 6570.519 kb on - strand, within Pf6N2E2_5757 at 6570.534 kb on - strand, within Pf6N2E2_5757 at 6570.564 kb on - strand, within Pf6N2E2_5757 at 6570.564 kb on - strand, within Pf6N2E2_5757 at 6570.600 kb on - strand at 6570.651 kb on - strand, within Pf6N2E2_5758 at 6570.682 kb on + strand, within Pf6N2E2_5758 at 6570.911 kb on - strand at 6570.911 kb on - strand at 6571.523 kb on + strand, within Pf6N2E2_5759 at 6571.523 kb on + strand, within Pf6N2E2_5759 at 6571.523 kb on + strand, within Pf6N2E2_5759
Per-strain Table
Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.5 mM remove 6,569,423 + Pf6N2E2_5756 0.86 -0.3 6,569,457 - -0.3 6,569,483 + +0.4 6,569,484 - +1.5 6,569,501 - -0.4 6,569,576 + +0.7 6,569,576 + -0.7 6,569,577 - -0.3 6,569,577 - -0.8 6,569,577 - +0.3 6,569,577 - +1.4 6,569,578 + -0.3 6,569,578 + -0.1 6,569,579 - +1.7 6,569,579 - +0.3 6,569,579 - -0.2 6,569,579 - +0.1 6,569,579 - -0.3 6,569,579 - -0.3 6,569,579 - -0.3 6,569,579 - -0.0 6,569,579 - -0.4 6,569,579 - +0.5 6,569,605 + +1.4 6,569,606 - +0.4 6,569,609 + -0.4 6,569,609 + -0.3 6,569,609 + -0.2 6,569,610 - +0.3 6,569,610 - -0.4 6,569,610 - -0.2 6,569,610 - -0.7 6,569,613 + -0.3 6,569,613 + +0.2 6,569,613 + -0.0 6,569,613 + +0.9 6,569,613 + -0.5 6,569,614 - -0.6 6,569,614 - +0.2 6,569,614 - +0.4 6,569,614 - -0.0 6,569,614 - +0.1 6,569,614 - +0.0 6,569,614 - -0.2 6,569,614 - -0.8 6,569,700 - -0.4 6,569,755 + +0.9 6,569,862 + -0.6 6,569,862 + +0.1 6,569,863 - +0.1 6,569,863 - -0.2 6,569,866 - -0.1 6,569,922 + -0.0 6,569,938 - -0.2 6,570,089 + +0.3 6,570,089 + -0.9 6,570,090 - +1.1 6,570,090 - -0.3 6,570,090 - -0.2 6,570,090 - +0.1 6,570,090 - -0.5 6,570,090 - -0.7 6,570,090 - +0.7 6,570,090 - +0.3 6,570,198 + +2.0 6,570,198 + +0.4 6,570,198 + +0.1 6,570,198 + +0.1 6,570,198 + +0.9 6,570,199 - +0.6 6,570,199 - -1.4 6,570,199 - -0.8 6,570,199 - +1.2 6,570,199 - +0.7 6,570,199 - -0.2 6,570,199 - +0.7 6,570,199 - +0.0 6,570,199 - -0.7 6,570,216 + -0.4 6,570,216 + -0.8 6,570,217 - -1.1 6,570,446 + Pf6N2E2_5757 0.21 +0.6 6,570,496 + Pf6N2E2_5757 0.47 +0.0 6,570,497 - Pf6N2E2_5757 0.48 -0.8 6,570,497 - Pf6N2E2_5757 0.48 -1.5 6,570,519 - Pf6N2E2_5757 0.59 -0.8 6,570,519 - Pf6N2E2_5757 0.59 +0.1 6,570,534 - Pf6N2E2_5757 0.67 -1.0 6,570,564 - Pf6N2E2_5757 0.83 +0.2 6,570,564 - Pf6N2E2_5757 0.83 -0.6 6,570,600 - +0.8 6,570,651 - Pf6N2E2_5758 0.18 -0.7 6,570,682 + Pf6N2E2_5758 0.30 +0.5 6,570,911 - -1.4 6,570,911 - +0.1 6,571,523 + Pf6N2E2_5759 0.39 +0.6 6,571,523 + Pf6N2E2_5759 0.39 -0.4 6,571,523 + Pf6N2E2_5759 0.39 -0.3
Or see this region's nucleotide sequence