Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_1803

Experiment: Nickel (II) chloride 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_1801 and Pf6N2E2_1802 are separated by 150 nucleotidesPf6N2E2_1802 and Pf6N2E2_1803 overlap by 8 nucleotidesPf6N2E2_1803 and Pf6N2E2_1804 overlap by 4 nucleotides Pf6N2E2_1801 - ABC-type polar amino acid transport system protein, substrate-binding protein, at 2,130,740 to 2,131,564 _1801 Pf6N2E2_1802 - polysaccharide deacetylase, at 2,131,715 to 2,132,563 _1802 Pf6N2E2_1803 - Polysaccharide deacetylase, at 2,132,556 to 2,133,443 _1803 Pf6N2E2_1804 - Immune-responsive protein 1, at 2,133,440 to 2,134,834 _1804 Position (kb) 2132 2133 2134Strain fitness (log2 ratio) -1 0 1 2at 2131.678 kb on + strandat 2131.678 kb on + strandat 2131.679 kb on - strandat 2131.687 kb on + strandat 2131.688 kb on - strandat 2131.688 kb on - strandat 2131.688 kb on - strandat 2131.751 kb on + strandat 2131.751 kb on + strandat 2131.752 kb on - strandat 2131.838 kb on + strand, within Pf6N2E2_1802at 2131.945 kb on - strand, within Pf6N2E2_1802at 2132.176 kb on + strand, within Pf6N2E2_1802at 2132.177 kb on - strand, within Pf6N2E2_1802at 2132.181 kb on - strand, within Pf6N2E2_1802at 2132.214 kb on - strand, within Pf6N2E2_1802at 2132.282 kb on + strand, within Pf6N2E2_1802at 2132.298 kb on - strand, within Pf6N2E2_1802at 2132.298 kb on - strand, within Pf6N2E2_1802at 2132.403 kb on + strand, within Pf6N2E2_1802at 2132.502 kb on + strandat 2133.114 kb on + strand, within Pf6N2E2_1803at 2133.115 kb on - strand, within Pf6N2E2_1803at 2133.172 kb on - strand, within Pf6N2E2_1803at 2133.234 kb on + strand, within Pf6N2E2_1803at 2133.235 kb on - strand, within Pf6N2E2_1803at 2133.440 kb on - strandat 2133.541 kb on + strandat 2134.345 kb on - strand, within Pf6N2E2_1804at 2134.424 kb on + strand, within Pf6N2E2_1804at 2134.425 kb on - strand, within Pf6N2E2_1804

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Per-strain Table

Position Strand Gene LocusTag Fraction Nickel (II) chloride 0.5 mM
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2,131,678 + -0.5
2,131,678 + -1.1
2,131,679 - -0.7
2,131,687 + +0.7
2,131,688 - +0.1
2,131,688 - +0.1
2,131,688 - +0.5
2,131,751 + -0.3
2,131,751 + -0.7
2,131,752 - +0.5
2,131,838 + Pf6N2E2_1802 0.14 +1.2
2,131,945 - Pf6N2E2_1802 0.27 +0.3
2,132,176 + Pf6N2E2_1802 0.54 +0.7
2,132,177 - Pf6N2E2_1802 0.54 -1.4
2,132,181 - Pf6N2E2_1802 0.55 +0.5
2,132,214 - Pf6N2E2_1802 0.59 -0.8
2,132,282 + Pf6N2E2_1802 0.67 +0.8
2,132,298 - Pf6N2E2_1802 0.69 +0.9
2,132,298 - Pf6N2E2_1802 0.69 -0.0
2,132,403 + Pf6N2E2_1802 0.81 +0.4
2,132,502 + +0.2
2,133,114 + Pf6N2E2_1803 0.63 -0.2
2,133,115 - Pf6N2E2_1803 0.63 +0.0
2,133,172 - Pf6N2E2_1803 0.69 -0.7
2,133,234 + Pf6N2E2_1803 0.76 -1.6
2,133,235 - Pf6N2E2_1803 0.76 -0.7
2,133,440 - -0.2
2,133,541 + +0.9
2,134,345 - Pf6N2E2_1804 0.65 +1.8
2,134,424 + Pf6N2E2_1804 0.71 +0.5
2,134,425 - Pf6N2E2_1804 0.71 -0.4

Or see this region's nucleotide sequence