Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01132

Experiment: PYE 0.5x 4C survival rep2 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01131 and CCNA_01132 are separated by 102 nucleotidesCCNA_01132 and CCNA_01133 are separated by 54 nucleotidesCCNA_01133 and CCNA_01134 are separated by 121 nucleotides CCNA_01131: CCNA_01131 - flagellar biosynthesis protein FlhB, at 1,234,550 to 1,235,635 _01131 CCNA_01132: CCNA_01132 - sensory transduction histidine kinase/receiver protein CckA, at 1,235,738 to 1,237,813 _01132 CCNA_01133: CCNA_01133 - hypothetical protein, at 1,237,868 to 1,238,398 _01133 CCNA_01134: CCNA_01134 - LuxR-family transcriptional regulator, at 1,238,520 to 1,238,933 _01134 Position (kb) 1235 1236 1237 1238Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1234.738 kb on - strand, within CCNA_01131at 1234.798 kb on + strand, within CCNA_01131at 1234.837 kb on + strand, within CCNA_01131at 1234.845 kb on - strand, within CCNA_01131at 1234.845 kb on - strand, within CCNA_01131at 1234.845 kb on - strand, within CCNA_01131at 1234.845 kb on - strand, within CCNA_01131at 1234.870 kb on + strand, within CCNA_01131at 1234.894 kb on + strand, within CCNA_01131at 1234.897 kb on - strand, within CCNA_01131at 1234.912 kb on + strand, within CCNA_01131at 1234.932 kb on + strand, within CCNA_01131at 1234.942 kb on + strand, within CCNA_01131at 1234.949 kb on + strand, within CCNA_01131at 1234.949 kb on + strand, within CCNA_01131at 1234.949 kb on + strand, within CCNA_01131at 1234.950 kb on - strand, within CCNA_01131at 1234.950 kb on - strand, within CCNA_01131at 1234.950 kb on - strand, within CCNA_01131at 1234.957 kb on - strand, within CCNA_01131at 1234.957 kb on - strand, within CCNA_01131at 1234.977 kb on + strand, within CCNA_01131at 1234.980 kb on - strand, within CCNA_01131at 1234.981 kb on + strand, within CCNA_01131at 1235.050 kb on + strand, within CCNA_01131at 1235.119 kb on + strand, within CCNA_01131at 1235.119 kb on + strandat 1235.119 kb on + strand, within CCNA_01131at 1235.119 kb on + strand, within CCNA_01131at 1235.119 kb on + strand, within CCNA_01131at 1235.119 kb on + strand, within CCNA_01131at 1235.119 kb on + strand, within CCNA_01131at 1235.119 kb on + strand, within CCNA_01131at 1235.147 kb on - strand, within CCNA_01131at 1235.163 kb on + strand, within CCNA_01131at 1235.168 kb on + strand, within CCNA_01131at 1235.221 kb on - strand, within CCNA_01131at 1235.228 kb on - strand, within CCNA_01131at 1235.240 kb on - strand, within CCNA_01131at 1235.241 kb on + strand, within CCNA_01131at 1235.241 kb on + strand, within CCNA_01131at 1235.241 kb on + strand, within CCNA_01131at 1235.251 kb on + strand, within CCNA_01131at 1235.290 kb on + strand, within CCNA_01131at 1235.332 kb on + strand, within CCNA_01131at 1235.365 kb on + strand, within CCNA_01131at 1235.370 kb on + strand, within CCNA_01131at 1235.385 kb on + strand, within CCNA_01131at 1235.394 kb on - strand, within CCNA_01131at 1235.455 kb on - strand, within CCNA_01131at 1235.516 kb on + strand, within CCNA_01131at 1235.524 kb on - strand, within CCNA_01131at 1235.524 kb on - strand, within CCNA_01131at 1235.524 kb on - strand, within CCNA_01131at 1235.552 kb on + strandat 1235.586 kb on + strandat 1235.609 kb on + strandat 1235.656 kb on + strandat 1235.664 kb on - strandat 1235.723 kb on + strandat 1235.724 kb on + strandat 1235.758 kb on + strandat 1235.773 kb on - strandat 1235.893 kb on + strandat 1237.856 kb on + strandat 1237.874 kb on - strandat 1237.874 kb on - strandat 1237.874 kb on - strandat 1237.874 kb on - strandat 1237.906 kb on + strandat 1237.911 kb on + strandat 1237.911 kb on + strandat 1237.916 kb on + strandat 1237.919 kb on - strandat 1237.919 kb on - strandat 1237.924 kb on - strand, within CCNA_01133at 1237.966 kb on - strand, within CCNA_01133at 1237.966 kb on - strand, within CCNA_01133at 1237.966 kb on - strand, within CCNA_01133at 1237.970 kb on + strand, within CCNA_01133at 1238.020 kb on - strand, within CCNA_01133at 1238.037 kb on + strand, within CCNA_01133at 1238.047 kb on + strand, within CCNA_01133at 1238.055 kb on + strand, within CCNA_01133at 1238.118 kb on + strand, within CCNA_01133at 1238.121 kb on - strand, within CCNA_01133at 1238.126 kb on - strand, within CCNA_01133at 1238.127 kb on + strand, within CCNA_01133at 1238.135 kb on - strand, within CCNA_01133at 1238.137 kb on + strand, within CCNA_01133at 1238.137 kb on + strand, within CCNA_01133at 1238.140 kb on - strand, within CCNA_01133at 1238.140 kb on - strand, within CCNA_01133at 1238.145 kb on - strand, within CCNA_01133at 1238.185 kb on + strand, within CCNA_01133at 1238.218 kb on - strand, within CCNA_01133at 1238.218 kb on - strand, within CCNA_01133at 1238.223 kb on - strand, within CCNA_01133at 1238.285 kb on + strand, within CCNA_01133at 1238.293 kb on - strand, within CCNA_01133at 1238.302 kb on + strand, within CCNA_01133at 1238.355 kb on - strandat 1238.361 kb on - strandat 1238.378 kb on + strandat 1238.386 kb on - strandat 1238.386 kb on - strandat 1238.395 kb on + strandat 1238.396 kb on - strandat 1238.400 kb on + strandat 1238.451 kb on - strandat 1238.470 kb on + strandat 1238.517 kb on + strandat 1238.538 kb on + strandat 1238.555 kb on + strandat 1238.576 kb on + strand, within CCNA_01134at 1238.587 kb on + strand, within CCNA_01134at 1238.587 kb on + strand, within CCNA_01134at 1238.587 kb on + strand, within CCNA_01134at 1238.595 kb on - strand, within CCNA_01134at 1238.600 kb on - strand, within CCNA_01134at 1238.607 kb on + strand, within CCNA_01134at 1238.617 kb on + strand, within CCNA_01134at 1238.638 kb on - strand, within CCNA_01134at 1238.687 kb on - strand, within CCNA_01134at 1238.716 kb on - strand, within CCNA_01134at 1238.754 kb on - strand, within CCNA_01134at 1238.809 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 4C survival rep2 28 days
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1,234,738 - CCNA_01131 0.17 -0.9
1,234,798 + CCNA_01131 0.23 -1.4
1,234,837 + CCNA_01131 0.26 +2.3
1,234,845 - CCNA_01131 0.27 -0.7
1,234,845 - CCNA_01131 0.27 +0.3
1,234,845 - CCNA_01131 0.27 -0.9
1,234,845 - CCNA_01131 0.27 -0.6
1,234,870 + CCNA_01131 0.29 -1.3
1,234,894 + CCNA_01131 0.32 -2.5
1,234,897 - CCNA_01131 0.32 +3.3
1,234,912 + CCNA_01131 0.33 -0.3
1,234,932 + CCNA_01131 0.35 -1.9
1,234,942 + CCNA_01131 0.36 -2.9
1,234,949 + CCNA_01131 0.37 +1.3
1,234,949 + CCNA_01131 0.37 +1.3
1,234,949 + CCNA_01131 0.37 -4.4
1,234,950 - CCNA_01131 0.37 +2.3
1,234,950 - CCNA_01131 0.37 +0.7
1,234,950 - CCNA_01131 0.37 -1.4
1,234,957 - CCNA_01131 0.37 -0.1
1,234,957 - CCNA_01131 0.37 -0.1
1,234,977 + CCNA_01131 0.39 -2.3
1,234,980 - CCNA_01131 0.40 -1.7
1,234,981 + CCNA_01131 0.40 -0.9
1,235,050 + CCNA_01131 0.46 -2.1
1,235,119 + CCNA_01131 0.52 -1.1
1,235,119 + -0.1
1,235,119 + CCNA_01131 0.52 -1.7
1,235,119 + CCNA_01131 0.52 -0.3
1,235,119 + CCNA_01131 0.52 -1.9
1,235,119 + CCNA_01131 0.52 +0.3
1,235,119 + CCNA_01131 0.52 -0.6
1,235,119 + CCNA_01131 0.52 -3.3
1,235,147 - CCNA_01131 0.55 +2.3
1,235,163 + CCNA_01131 0.56 -2.1
1,235,168 + CCNA_01131 0.57 -2.3
1,235,221 - CCNA_01131 0.62 +1.9
1,235,228 - CCNA_01131 0.62 -2.1
1,235,240 - CCNA_01131 0.64 -1.3
1,235,241 + CCNA_01131 0.64 +2.3
1,235,241 + CCNA_01131 0.64 -0.9
1,235,241 + CCNA_01131 0.64 +2.3
1,235,251 + CCNA_01131 0.65 -1.7
1,235,290 + CCNA_01131 0.68 -1.4
1,235,332 + CCNA_01131 0.72 -1.4
1,235,365 + CCNA_01131 0.75 -1.6
1,235,370 + CCNA_01131 0.76 -0.1
1,235,385 + CCNA_01131 0.77 -0.6
1,235,394 - CCNA_01131 0.78 +0.7
1,235,455 - CCNA_01131 0.83 -0.3
1,235,516 + CCNA_01131 0.89 -0.7
1,235,524 - CCNA_01131 0.90 +0.3
1,235,524 - CCNA_01131 0.90 -0.9
1,235,524 - CCNA_01131 0.90 -1.3
1,235,552 + -1.3
1,235,586 + +2.9
1,235,609 + +0.5
1,235,656 + +0.9
1,235,664 - -0.9
1,235,723 + +0.3
1,235,724 + +0.4
1,235,758 + +0.2
1,235,773 - -1.4
1,235,893 + -3.7
1,237,856 + -2.7
1,237,874 - +4.2
1,237,874 - -1.9
1,237,874 - +0.2
1,237,874 - +1.0
1,237,906 + -1.0
1,237,911 + -0.2
1,237,911 + +1.4
1,237,916 + +0.3
1,237,919 - -0.2
1,237,919 - -1.7
1,237,924 - CCNA_01133 0.11 +0.2
1,237,966 - CCNA_01133 0.18 -0.1
1,237,966 - CCNA_01133 0.18 +0.6
1,237,966 - CCNA_01133 0.18 -1.9
1,237,970 + CCNA_01133 0.19 +0.2
1,238,020 - CCNA_01133 0.29 +0.3
1,238,037 + CCNA_01133 0.32 +0.7
1,238,047 + CCNA_01133 0.34 -0.1
1,238,055 + CCNA_01133 0.35 -1.4
1,238,118 + CCNA_01133 0.47 -0.2
1,238,121 - CCNA_01133 0.48 -1.9
1,238,126 - CCNA_01133 0.49 +0.8
1,238,127 + CCNA_01133 0.49 -1.8
1,238,135 - CCNA_01133 0.50 -2.5
1,238,137 + CCNA_01133 0.51 +1.2
1,238,137 + CCNA_01133 0.51 -2.2
1,238,140 - CCNA_01133 0.51 +0.2
1,238,140 - CCNA_01133 0.51 -0.5
1,238,145 - CCNA_01133 0.52 -0.4
1,238,185 + CCNA_01133 0.60 -0.2
1,238,218 - CCNA_01133 0.66 -0.9
1,238,218 - CCNA_01133 0.66 -0.6
1,238,223 - CCNA_01133 0.67 -2.2
1,238,285 + CCNA_01133 0.79 +0.4
1,238,293 - CCNA_01133 0.80 -0.5
1,238,302 + CCNA_01133 0.82 +1.0
1,238,355 - +0.3
1,238,361 - -0.6
1,238,378 + -1.6
1,238,386 - +0.2
1,238,386 - +0.1
1,238,395 + -0.3
1,238,396 - -1.3
1,238,400 + +0.4
1,238,451 - -2.9
1,238,470 + +0.4
1,238,517 + -0.1
1,238,538 + -1.8
1,238,555 + +0.2
1,238,576 + CCNA_01134 0.14 -2.4
1,238,587 + CCNA_01134 0.16 -0.7
1,238,587 + CCNA_01134 0.16 -0.6
1,238,587 + CCNA_01134 0.16 -1.8
1,238,595 - CCNA_01134 0.18 -1.7
1,238,600 - CCNA_01134 0.19 +1.0
1,238,607 + CCNA_01134 0.21 +0.1
1,238,617 + CCNA_01134 0.23 +0.3
1,238,638 - CCNA_01134 0.29 +1.2
1,238,687 - CCNA_01134 0.40 -1.5
1,238,716 - CCNA_01134 0.47 -0.8
1,238,754 - CCNA_01134 0.57 -0.1
1,238,809 + -1.0

Or see this region's nucleotide sequence