Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00903

Experiment: PYE 0.5x 4C survival rep2 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00902 and CCNA_00903 are separated by 22 nucleotidesCCNA_00903 and CCNA_00904 overlap by 4 nucleotides CCNA_00902: CCNA_00902 - inositol ABC transporter, periplasmic inositol-binding protein IbpA, at 981,935 to 982,915 _00902 CCNA_00903: CCNA_00903 - inositol transport ATP-binding protein IatA, at 982,938 to 984,485 _00903 CCNA_00904: CCNA_00904 - inositol ABC transport system, permease protein IatP, at 984,482 to 985,480 _00904 Position (kb) 982 983 984 985Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 981.940 kb on - strandat 981.969 kb on - strandat 981.970 kb on + strandat 981.997 kb on - strandat 982.012 kb on - strandat 982.034 kb on - strand, within CCNA_00902at 982.045 kb on + strand, within CCNA_00902at 982.052 kb on + strand, within CCNA_00902at 982.074 kb on + strand, within CCNA_00902at 982.076 kb on + strand, within CCNA_00902at 982.122 kb on - strand, within CCNA_00902at 982.137 kb on - strand, within CCNA_00902at 982.155 kb on - strand, within CCNA_00902at 982.157 kb on + strand, within CCNA_00902at 982.162 kb on + strand, within CCNA_00902at 982.170 kb on + strand, within CCNA_00902at 982.190 kb on - strand, within CCNA_00902at 982.200 kb on + strand, within CCNA_00902at 982.200 kb on + strand, within CCNA_00902at 982.205 kb on + strand, within CCNA_00902at 982.205 kb on + strand, within CCNA_00902at 982.205 kb on + strand, within CCNA_00902at 982.213 kb on + strand, within CCNA_00902at 982.213 kb on + strand, within CCNA_00902at 982.213 kb on - strand, within CCNA_00902at 982.221 kb on - strand, within CCNA_00902at 982.250 kb on + strand, within CCNA_00902at 982.273 kb on - strand, within CCNA_00902at 982.292 kb on + strand, within CCNA_00902at 982.383 kb on - strand, within CCNA_00902at 982.394 kb on + strand, within CCNA_00902at 982.422 kb on + strandat 982.449 kb on + strand, within CCNA_00902at 982.449 kb on + strand, within CCNA_00902at 982.468 kb on + strand, within CCNA_00902at 982.468 kb on + strand, within CCNA_00902at 982.476 kb on - strand, within CCNA_00902at 982.476 kb on - strand, within CCNA_00902at 982.486 kb on - strand, within CCNA_00902at 982.540 kb on + strand, within CCNA_00902at 982.548 kb on - strand, within CCNA_00902at 982.548 kb on - strand, within CCNA_00902at 982.556 kb on + strand, within CCNA_00902at 982.585 kb on - strand, within CCNA_00902at 982.622 kb on - strand, within CCNA_00902at 982.637 kb on + strand, within CCNA_00902at 982.644 kb on - strand, within CCNA_00902at 982.670 kb on + strand, within CCNA_00902at 982.670 kb on + strand, within CCNA_00902at 982.670 kb on + strand, within CCNA_00902at 982.670 kb on + strand, within CCNA_00902at 982.670 kb on + strand, within CCNA_00902at 982.678 kb on - strand, within CCNA_00902at 982.678 kb on - strand, within CCNA_00902at 982.680 kb on + strand, within CCNA_00902at 982.687 kb on + strand, within CCNA_00902at 982.695 kb on - strand, within CCNA_00902at 982.695 kb on - strand, within CCNA_00902at 982.701 kb on + strand, within CCNA_00902at 982.721 kb on + strand, within CCNA_00902at 982.721 kb on - strand, within CCNA_00902at 982.723 kb on - strand, within CCNA_00902at 982.760 kb on + strand, within CCNA_00902at 982.766 kb on - strand, within CCNA_00902at 982.768 kb on - strand, within CCNA_00902at 982.768 kb on - strand, within CCNA_00902at 982.771 kb on - strand, within CCNA_00902at 982.815 kb on + strand, within CCNA_00902at 982.816 kb on + strand, within CCNA_00902at 982.822 kb on + strandat 982.824 kb on - strandat 982.828 kb on - strandat 982.848 kb on + strandat 982.848 kb on + strandat 982.848 kb on + strandat 982.854 kb on + strandat 982.856 kb on - strandat 982.867 kb on - strandat 982.873 kb on + strandat 982.890 kb on - strandat 982.934 kb on + strandat 982.935 kb on + strandat 982.943 kb on - strandat 983.008 kb on - strandat 983.017 kb on + strandat 983.022 kb on + strandat 983.062 kb on + strandat 983.070 kb on - strandat 983.072 kb on + strandat 983.077 kb on + strandat 983.080 kb on - strandat 983.105 kb on + strand, within CCNA_00903at 983.112 kb on + strand, within CCNA_00903at 983.113 kb on - strand, within CCNA_00903at 983.120 kb on - strand, within CCNA_00903at 983.132 kb on + strand, within CCNA_00903at 983.140 kb on - strand, within CCNA_00903at 983.140 kb on - strand, within CCNA_00903at 983.143 kb on + strand, within CCNA_00903at 983.209 kb on + strand, within CCNA_00903at 983.231 kb on + strandat 983.268 kb on - strand, within CCNA_00903at 983.268 kb on - strand, within CCNA_00903at 983.268 kb on - strand, within CCNA_00903at 983.268 kb on - strand, within CCNA_00903at 983.297 kb on + strand, within CCNA_00903at 983.298 kb on + strand, within CCNA_00903at 983.298 kb on + strand, within CCNA_00903at 983.305 kb on - strand, within CCNA_00903at 983.325 kb on - strand, within CCNA_00903at 983.343 kb on - strandat 983.375 kb on + strand, within CCNA_00903at 983.396 kb on + strand, within CCNA_00903at 983.404 kb on - strand, within CCNA_00903at 983.404 kb on - strand, within CCNA_00903at 983.404 kb on - strand, within CCNA_00903at 983.516 kb on + strand, within CCNA_00903at 983.523 kb on + strand, within CCNA_00903at 983.524 kb on - strand, within CCNA_00903at 983.524 kb on - strand, within CCNA_00903at 983.557 kb on - strand, within CCNA_00903at 983.579 kb on - strand, within CCNA_00903at 983.672 kb on + strand, within CCNA_00903at 983.815 kb on - strand, within CCNA_00903at 983.830 kb on + strand, within CCNA_00903at 983.835 kb on + strand, within CCNA_00903at 983.835 kb on + strand, within CCNA_00903at 983.835 kb on + strand, within CCNA_00903at 983.835 kb on + strand, within CCNA_00903at 983.843 kb on - strand, within CCNA_00903at 983.843 kb on - strand, within CCNA_00903at 983.843 kb on - strand, within CCNA_00903at 983.843 kb on - strand, within CCNA_00903at 983.843 kb on - strand, within CCNA_00903at 983.843 kb on - strand, within CCNA_00903at 983.843 kb on - strand, within CCNA_00903at 983.882 kb on + strand, within CCNA_00903at 983.926 kb on + strand, within CCNA_00903at 983.934 kb on - strand, within CCNA_00903at 983.941 kb on + strand, within CCNA_00903at 983.941 kb on + strand, within CCNA_00903at 983.944 kb on - strand, within CCNA_00903at 983.953 kb on + strand, within CCNA_00903at 983.970 kb on + strand, within CCNA_00903at 983.975 kb on + strand, within CCNA_00903at 983.983 kb on - strand, within CCNA_00903at 984.007 kb on + strand, within CCNA_00903at 984.014 kb on - strand, within CCNA_00903at 984.015 kb on - strand, within CCNA_00903at 984.016 kb on + strand, within CCNA_00903at 984.044 kb on + strand, within CCNA_00903at 984.048 kb on - strand, within CCNA_00903at 984.080 kb on + strand, within CCNA_00903at 984.080 kb on + strand, within CCNA_00903at 984.146 kb on + strand, within CCNA_00903at 984.154 kb on - strand, within CCNA_00903at 984.203 kb on + strand, within CCNA_00903at 984.232 kb on + strand, within CCNA_00903at 984.329 kb on + strand, within CCNA_00903at 984.401 kb on - strandat 984.414 kb on + strandat 984.430 kb on - strandat 984.432 kb on - strandat 984.439 kb on + strandat 984.447 kb on - strandat 984.523 kb on + strandat 984.544 kb on - strandat 984.544 kb on - strandat 984.574 kb on - strandat 984.595 kb on + strand, within CCNA_00904at 984.628 kb on + strand, within CCNA_00904at 984.635 kb on + strand, within CCNA_00904at 984.643 kb on - strand, within CCNA_00904at 984.682 kb on + strand, within CCNA_00904at 984.683 kb on + strand, within CCNA_00904at 984.683 kb on + strand, within CCNA_00904at 984.706 kb on - strand, within CCNA_00904at 984.706 kb on - strand, within CCNA_00904at 984.734 kb on + strand, within CCNA_00904at 984.761 kb on + strand, within CCNA_00904at 984.769 kb on - strand, within CCNA_00904at 984.769 kb on - strand, within CCNA_00904at 984.798 kb on + strand, within CCNA_00904at 984.813 kb on - strand, within CCNA_00904at 984.827 kb on + strand, within CCNA_00904at 984.827 kb on + strand, within CCNA_00904at 984.832 kb on + strand, within CCNA_00904at 984.835 kb on - strand, within CCNA_00904at 984.841 kb on + strand, within CCNA_00904at 984.841 kb on + strand, within CCNA_00904at 984.842 kb on + strand, within CCNA_00904at 984.854 kb on + strand, within CCNA_00904at 984.854 kb on + strand, within CCNA_00904at 984.859 kb on + strand, within CCNA_00904at 984.859 kb on + strand, within CCNA_00904at 984.859 kb on + strand, within CCNA_00904at 984.862 kb on - strand, within CCNA_00904at 984.862 kb on - strand, within CCNA_00904at 984.867 kb on - strand, within CCNA_00904at 984.867 kb on - strand, within CCNA_00904at 984.867 kb on - strand, within CCNA_00904at 984.867 kb on - strand, within CCNA_00904at 984.867 kb on - strand, within CCNA_00904at 984.867 kb on - strand, within CCNA_00904at 984.874 kb on - strand, within CCNA_00904at 984.897 kb on + strand, within CCNA_00904at 984.938 kb on - strand, within CCNA_00904at 984.990 kb on + strand, within CCNA_00904at 984.990 kb on + strand, within CCNA_00904at 985.030 kb on + strand, within CCNA_00904at 985.035 kb on + strand, within CCNA_00904at 985.072 kb on + strand, within CCNA_00904at 985.080 kb on - strand, within CCNA_00904at 985.082 kb on + strandat 985.096 kb on + strand, within CCNA_00904at 985.096 kb on + strand, within CCNA_00904at 985.104 kb on - strand, within CCNA_00904at 985.104 kb on - strand, within CCNA_00904at 985.117 kb on + strand, within CCNA_00904at 985.264 kb on + strand, within CCNA_00904at 985.271 kb on + strand, within CCNA_00904at 985.278 kb on + strand, within CCNA_00904at 985.296 kb on + strand, within CCNA_00904at 985.309 kb on - strand, within CCNA_00904at 985.323 kb on - strand, within CCNA_00904at 985.345 kb on - strand, within CCNA_00904at 985.366 kb on + strand, within CCNA_00904at 985.385 kb on - strandat 985.421 kb on + strandat 985.426 kb on + strandat 985.429 kb on - strandat 985.447 kb on - strandat 985.463 kb on - strandat 985.467 kb on + strandat 985.475 kb on + strandat 985.475 kb on + strandat 985.483 kb on - strandat 985.485 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 0.5x 4C survival rep2 28 days
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981,940 - -2.8
981,969 - +0.2
981,970 + -1.3
981,997 - -1.6
982,012 - -1.6
982,034 - CCNA_00902 0.10 -0.4
982,045 + CCNA_00902 0.11 +0.2
982,052 + CCNA_00902 0.12 -0.7
982,074 + CCNA_00902 0.14 -1.2
982,076 + CCNA_00902 0.14 -1.2
982,122 - CCNA_00902 0.19 -0.9
982,137 - CCNA_00902 0.21 +0.7
982,155 - CCNA_00902 0.22 -1.0
982,157 + CCNA_00902 0.23 +0.5
982,162 + CCNA_00902 0.23 -1.6
982,170 + CCNA_00902 0.24 -1.4
982,190 - CCNA_00902 0.26 -0.9
982,200 + CCNA_00902 0.27 +1.6
982,200 + CCNA_00902 0.27 -0.2
982,205 + CCNA_00902 0.28 -0.3
982,205 + CCNA_00902 0.28 -0.1
982,205 + CCNA_00902 0.28 -1.0
982,213 + CCNA_00902 0.28 +0.4
982,213 + CCNA_00902 0.28 +0.8
982,213 - CCNA_00902 0.28 +1.7
982,221 - CCNA_00902 0.29 +1.2
982,250 + CCNA_00902 0.32 +1.0
982,273 - CCNA_00902 0.34 -0.2
982,292 + CCNA_00902 0.36 -2.7
982,383 - CCNA_00902 0.46 -1.3
982,394 + CCNA_00902 0.47 -2.4
982,422 + +1.3
982,449 + CCNA_00902 0.52 -0.0
982,449 + CCNA_00902 0.52 +0.4
982,468 + CCNA_00902 0.54 -2.0
982,468 + CCNA_00902 0.54 -0.7
982,476 - CCNA_00902 0.55 -1.0
982,476 - CCNA_00902 0.55 +0.7
982,486 - CCNA_00902 0.56 -0.0
982,540 + CCNA_00902 0.62 -0.6
982,548 - CCNA_00902 0.62 +1.8
982,548 - CCNA_00902 0.62 -0.4
982,556 + CCNA_00902 0.63 -2.4
982,585 - CCNA_00902 0.66 -0.8
982,622 - CCNA_00902 0.70 -0.7
982,637 + CCNA_00902 0.72 -0.7
982,644 - CCNA_00902 0.72 +1.6
982,670 + CCNA_00902 0.75 -1.0
982,670 + CCNA_00902 0.75 +0.1
982,670 + CCNA_00902 0.75 -1.2
982,670 + CCNA_00902 0.75 -1.5
982,670 + CCNA_00902 0.75 -1.3
982,678 - CCNA_00902 0.76 -1.2
982,678 - CCNA_00902 0.76 +2.3
982,680 + CCNA_00902 0.76 -0.8
982,687 + CCNA_00902 0.77 +0.4
982,695 - CCNA_00902 0.77 -0.3
982,695 - CCNA_00902 0.77 +0.0
982,701 + CCNA_00902 0.78 +2.3
982,721 + CCNA_00902 0.80 +2.2
982,721 - CCNA_00902 0.80 -1.0
982,723 - CCNA_00902 0.80 -0.0
982,760 + CCNA_00902 0.84 -0.2
982,766 - CCNA_00902 0.85 -2.5
982,768 - CCNA_00902 0.85 -0.6
982,768 - CCNA_00902 0.85 +1.6
982,771 - CCNA_00902 0.85 +0.2
982,815 + CCNA_00902 0.90 -0.5
982,816 + CCNA_00902 0.90 +0.4
982,822 + -0.2
982,824 - +1.6
982,828 - -1.2
982,848 + +0.9
982,848 + -0.8
982,848 + -0.4
982,854 + +0.1
982,856 - +1.1
982,867 - -2.2
982,873 + -0.6
982,890 - -1.5
982,934 + +0.5
982,935 + -0.5
982,943 - -0.9
983,008 - -2.3
983,017 + -1.0
983,022 + -1.3
983,062 + -1.6
983,070 - +1.6
983,072 + +1.7
983,077 + -1.2
983,080 - -0.6
983,105 + CCNA_00903 0.11 -0.5
983,112 + CCNA_00903 0.11 -2.1
983,113 - CCNA_00903 0.11 -1.0
983,120 - CCNA_00903 0.12 -0.9
983,132 + CCNA_00903 0.13 +2.1
983,140 - CCNA_00903 0.13 -2.2
983,140 - CCNA_00903 0.13 -0.3
983,143 + CCNA_00903 0.13 +0.6
983,209 + CCNA_00903 0.18 +0.7
983,231 + -0.5
983,268 - CCNA_00903 0.21 -2.9
983,268 - CCNA_00903 0.21 -2.0
983,268 - CCNA_00903 0.21 +0.3
983,268 - CCNA_00903 0.21 +1.3
983,297 + CCNA_00903 0.23 +0.8
983,298 + CCNA_00903 0.23 -0.0
983,298 + CCNA_00903 0.23 -1.9
983,305 - CCNA_00903 0.24 +0.4
983,325 - CCNA_00903 0.25 -2.9
983,343 - -1.3
983,375 + CCNA_00903 0.28 +0.2
983,396 + CCNA_00903 0.30 -0.1
983,404 - CCNA_00903 0.30 -0.7
983,404 - CCNA_00903 0.30 -0.9
983,404 - CCNA_00903 0.30 -1.9
983,516 + CCNA_00903 0.37 -2.3
983,523 + CCNA_00903 0.38 -0.3
983,524 - CCNA_00903 0.38 -1.7
983,524 - CCNA_00903 0.38 -1.9
983,557 - CCNA_00903 0.40 +0.5
983,579 - CCNA_00903 0.41 -0.5
983,672 + CCNA_00903 0.47 -0.4
983,815 - CCNA_00903 0.57 -0.4
983,830 + CCNA_00903 0.58 -1.2
983,835 + CCNA_00903 0.58 +0.2
983,835 + CCNA_00903 0.58 -1.7
983,835 + CCNA_00903 0.58 +0.7
983,835 + CCNA_00903 0.58 -0.3
983,843 - CCNA_00903 0.58 -2.0
983,843 - CCNA_00903 0.58 +1.8
983,843 - CCNA_00903 0.58 -2.2
983,843 - CCNA_00903 0.58 -2.4
983,843 - CCNA_00903 0.58 -1.5
983,843 - CCNA_00903 0.58 -2.1
983,843 - CCNA_00903 0.58 -2.9
983,882 + CCNA_00903 0.61 -1.7
983,926 + CCNA_00903 0.64 +1.3
983,934 - CCNA_00903 0.64 +1.3
983,941 + CCNA_00903 0.65 -3.3
983,941 + CCNA_00903 0.65 +0.3
983,944 - CCNA_00903 0.65 +2.7
983,953 + CCNA_00903 0.66 -2.4
983,970 + CCNA_00903 0.67 -1.2
983,975 + CCNA_00903 0.67 +2.3
983,983 - CCNA_00903 0.68 -0.5
984,007 + CCNA_00903 0.69 +0.1
984,014 - CCNA_00903 0.70 -2.9
984,015 - CCNA_00903 0.70 -2.6
984,016 + CCNA_00903 0.70 +1.2
984,044 + CCNA_00903 0.71 -0.5
984,048 - CCNA_00903 0.72 +1.6
984,080 + CCNA_00903 0.74 -0.9
984,080 + CCNA_00903 0.74 -2.2
984,146 + CCNA_00903 0.78 +1.1
984,154 - CCNA_00903 0.79 -1.0
984,203 + CCNA_00903 0.82 -0.0
984,232 + CCNA_00903 0.84 -1.9
984,329 + CCNA_00903 0.90 -1.9
984,401 - -0.7
984,414 + -2.0
984,430 - -0.6
984,432 - -1.8
984,439 + -0.5
984,447 - -0.7
984,523 + -3.2
984,544 - +0.7
984,544 - -0.5
984,574 - +3.1
984,595 + CCNA_00904 0.11 +0.3
984,628 + CCNA_00904 0.15 +1.0
984,635 + CCNA_00904 0.15 -1.4
984,643 - CCNA_00904 0.16 -1.9
984,682 + CCNA_00904 0.20 +0.9
984,683 + CCNA_00904 0.20 +1.6
984,683 + CCNA_00904 0.20 +0.4
984,706 - CCNA_00904 0.22 +0.5
984,706 - CCNA_00904 0.22 +0.9
984,734 + CCNA_00904 0.25 -0.2
984,761 + CCNA_00904 0.28 -0.9
984,769 - CCNA_00904 0.29 -1.9
984,769 - CCNA_00904 0.29 -1.8
984,798 + CCNA_00904 0.32 -2.5
984,813 - CCNA_00904 0.33 -1.5
984,827 + CCNA_00904 0.35 -0.6
984,827 + CCNA_00904 0.35 -0.4
984,832 + CCNA_00904 0.35 +0.8
984,835 - CCNA_00904 0.35 -1.4
984,841 + CCNA_00904 0.36 -0.6
984,841 + CCNA_00904 0.36 -1.5
984,842 + CCNA_00904 0.36 +0.6
984,854 + CCNA_00904 0.37 -0.5
984,854 + CCNA_00904 0.37 -0.5
984,859 + CCNA_00904 0.38 +1.5
984,859 + CCNA_00904 0.38 -1.4
984,859 + CCNA_00904 0.38 -2.6
984,862 - CCNA_00904 0.38 -1.0
984,862 - CCNA_00904 0.38 -1.5
984,867 - CCNA_00904 0.39 +1.8
984,867 - CCNA_00904 0.39 -0.7
984,867 - CCNA_00904 0.39 +0.1
984,867 - CCNA_00904 0.39 -1.2
984,867 - CCNA_00904 0.39 +2.1
984,867 - CCNA_00904 0.39 -1.3
984,874 - CCNA_00904 0.39 -0.3
984,897 + CCNA_00904 0.42 +0.1
984,938 - CCNA_00904 0.46 -1.0
984,990 + CCNA_00904 0.51 -0.6
984,990 + CCNA_00904 0.51 -1.7
985,030 + CCNA_00904 0.55 -1.8
985,035 + CCNA_00904 0.55 -2.6
985,072 + CCNA_00904 0.59 -0.8
985,080 - CCNA_00904 0.60 +1.3
985,082 + -0.3
985,096 + CCNA_00904 0.61 +0.3
985,096 + CCNA_00904 0.61 +0.9
985,104 - CCNA_00904 0.62 +0.3
985,104 - CCNA_00904 0.62 -1.2
985,117 + CCNA_00904 0.64 -0.4
985,264 + CCNA_00904 0.78 -1.0
985,271 + CCNA_00904 0.79 +1.4
985,278 + CCNA_00904 0.80 +0.6
985,296 + CCNA_00904 0.81 -0.8
985,309 - CCNA_00904 0.83 +1.3
985,323 - CCNA_00904 0.84 +2.8
985,345 - CCNA_00904 0.86 +2.7
985,366 + CCNA_00904 0.88 -2.0
985,385 - -1.0
985,421 + -0.9
985,426 + -1.5
985,429 - +0.3
985,447 - +2.3
985,463 - +0.6
985,467 + +0.2
985,475 + +1.1
985,475 + +0.6
985,483 - -0.9
985,485 + +0.1

Or see this region's nucleotide sequence