Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01476

Experiment: PYE 0.5x 4C survival rep1 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 0.5x 4C survival rep1 28 days
1,582,425	+		CCNA_01474	0.74	-1.9
1,582,597	-				-0.9
1,582,659	+				+0.1
1,582,659	+				-0.6
1,582,674	-		CCNA_01475	0.12	+2.1
1,582,679	+		CCNA_01475	0.12	+0.4
1,582,687	-		CCNA_01475	0.14	+2.4
1,582,702	-		CCNA_01475	0.16	+1.4
1,582,735	-		CCNA_01475	0.21	-1.5
1,582,746	-				-1.6
1,582,750	-		CCNA_01475	0.23	-2.2
1,582,796	+		CCNA_01475	0.31	-1.7
1,582,804	-		CCNA_01475	0.32	+3.4
1,582,806	+				-1.5
1,582,814	-		CCNA_01475	0.33	-0.2
1,582,823	+		CCNA_01475	0.35	-0.4
1,582,827	-		CCNA_01475	0.35	-1.6
1,582,856	+		CCNA_01475	0.40	-3.1
1,582,864	+		CCNA_01475	0.41	-1.2
1,582,872	-		CCNA_01475	0.42	-1.8
1,582,874	-		CCNA_01475	0.43	+0.1
1,582,892	+		CCNA_01475	0.45	+0.4
1,582,918	-		CCNA_01475	0.49	-1.6
1,582,919	+		CCNA_01475	0.50	+0.2
1,582,947	+		CCNA_01475	0.54	-1.6
1,582,976	+		CCNA_01475	0.58	+0.7
1,582,981	+		CCNA_01475	0.59	-0.6
1,582,989	-		CCNA_01475	0.60	-1.1
1,582,998	+		CCNA_01475	0.62	-3.3
1,582,998	+		CCNA_01475	0.62	-1.5
1,583,005	+		CCNA_01475	0.63	+1.6
1,583,006	-		CCNA_01475	0.63	-0.2
1,583,006	-		CCNA_01475	0.63	+0.2
1,583,015	+		CCNA_01475	0.64	-0.8
1,583,023	-		CCNA_01475	0.66	-0.5
1,583,023	-		CCNA_01475	0.66	-0.8
1,583,047	+		CCNA_01475	0.69	+0.3
1,583,053	+		CCNA_01475	0.70	-0.9
1,583,070	+		CCNA_01475	0.73	-2.1
1,583,077	-		CCNA_01475	0.74	-0.6
1,583,079	+		CCNA_01475	0.74	-1.0
1,583,132	+		CCNA_01475	0.83	-2.1
1,583,165	+		CCNA_01475	0.88	-0.7
1,583,194	-				-1.5
1,583,205	-				+0.1
1,583,205	-				-0.8
1,583,238	+				-1.6
1,583,310	-				-0.1
1,583,323	+				-1.1
1,583,324	+				-1.3
1,583,324	+				-0.4
1,583,348	-				-1.2
1,583,369	-				-0.1
1,583,377	+				-1.7
1,583,385	-				-2.5
1,583,385	-				-0.7
1,583,413	-				-1.8
1,583,415	+				+3.4
1,583,437	-				-1.8
1,583,438	+				-2.0
1,583,438	+				-1.5
1,583,487	+				-0.7
1,583,543	+		CCNA_01476	0.15	-1.1
1,583,543	+		CCNA_01476	0.15	+0.1
1,583,551	-		CCNA_01476	0.16	+0.0
1,583,551	-		CCNA_01476	0.16	-0.1
1,583,557	+		CCNA_01476	0.17	+0.4
1,583,558	+		CCNA_01476	0.17	-2.3
1,583,565	-		CCNA_01476	0.18	+1.4
1,583,600	-		CCNA_01476	0.23	-0.9
1,583,650	-		CCNA_01476	0.29	-3.3
1,583,688	-		CCNA_01476	0.34	-2.1
1,583,697	-		CCNA_01476	0.35	+2.4
1,583,697	-		CCNA_01476	0.35	+2.4
1,583,697	-		CCNA_01476	0.35	+2.4
1,583,699	+		CCNA_01476	0.36	+0.2
1,583,699	+		CCNA_01476	0.36	+1.0
1,583,699	+		CCNA_01476	0.36	+0.1
1,583,707	-		CCNA_01476	0.37	+0.1
1,583,707	-		CCNA_01476	0.37	-3.4
1,583,743	-		CCNA_01476	0.41	-1.7
1,583,749	+		CCNA_01476	0.42	+0.7
1,583,751	-		CCNA_01476	0.42	-2.1
1,583,791	+		CCNA_01476	0.48	-0.1
1,583,791	+		CCNA_01476	0.48	+0.1
1,583,799	-		CCNA_01476	0.49	-0.9
1,583,865	+		CCNA_01476	0.57	-0.8
1,583,866	-		CCNA_01476	0.57	-2.5
1,583,873	-		CCNA_01476	0.58	-2.0
1,583,881	-		CCNA_01476	0.59	+0.1
1,583,883	-		CCNA_01476	0.60	-1.2
1,583,902	-		CCNA_01476	0.62	-0.3
1,583,918	-		CCNA_01476	0.64	-1.8
1,583,920	-		CCNA_01476	0.64	+2.4
1,583,930	+		CCNA_01476	0.66	-0.6
1,583,930	+		CCNA_01476	0.66	-2.4
1,583,937	+				-1.9
1,583,969	-		CCNA_01476	0.71	-0.1
1,583,969	-		CCNA_01476	0.71	+0.8
1,583,976	+		CCNA_01476	0.72	+1.4
1,583,984	-		CCNA_01476	0.73	-0.3
1,583,984	-		CCNA_01476	0.73	-1.2
1,583,989	+		CCNA_01476	0.73	-2.6
1,584,017	+		CCNA_01476	0.77	-3.0
1,584,069	+		CCNA_01476	0.84	-0.5
1,584,070	+		CCNA_01476	0.84	+0.8
1,584,078	-		CCNA_01476	0.85	-2.2
1,584,078	-		CCNA_01476	0.85	-1.1
1,584,141	+				-2.6
1,584,149	-				-0.2
1,584,194	-				-1.2
1,584,206	+				-1.7
1,584,218	+				+0.3
1,584,223	+				+2.0
1,584,226	-				+2.4
1,584,226	-				-1.5
1,584,231	-				-0.3
1,584,251	-				+1.1
1,584,252	+				-1.6
1,584,311	+				-1.1
1,584,366	+				-1.2
1,584,374	-		CCNA_01477	0.10	+0.2
1,584,389	+		CCNA_01477	0.11	-0.9
1,584,396	+		CCNA_01477	0.12	-1.4
1,584,396	+		CCNA_01477	0.12	-0.6
1,584,452	-		CCNA_01477	0.16	-1.2
1,584,466	+		CCNA_01477	0.17	-2.3
1,584,466	+		CCNA_01477	0.17	-2.6
1,584,466	+		CCNA_01477	0.17	-1.1
1,584,474	-		CCNA_01477	0.17	+0.3
1,584,474	-		CCNA_01477	0.17	-0.5
1,584,476	+		CCNA_01477	0.18	-1.3
1,584,477	+		CCNA_01477	0.18	+0.6
1,584,484	-		CCNA_01477	0.18	+0.1
1,584,534	+		CCNA_01477	0.22	-0.6
1,584,603	-		CCNA_01477	0.27	-0.3
1,584,623	+		CCNA_01477	0.28	+0.4
1,584,623	+		CCNA_01477	0.28	-1.7
1,584,650	-		CCNA_01477	0.30	-2.0
1,584,654	+		CCNA_01477	0.31	-2.3
1,584,660	-		CCNA_01477	0.31	+2.4
1,584,695	-		CCNA_01477	0.34	+0.1
1,584,719	+		CCNA_01477	0.35	-2.0
1,584,747	+		CCNA_01477	0.37	-0.8
1,584,754	+		CCNA_01477	0.38	-0.8
1,584,819	+		CCNA_01477	0.43	-1.6
1,584,835	+		CCNA_01477	0.44	-1.0
1,584,835	-		CCNA_01477	0.44	+1.1
1,584,856	+		CCNA_01477	0.45	+0.7
1,584,864	-		CCNA_01477	0.46	-2.5
1,584,866	+		CCNA_01477	0.46	+0.4
1,584,874	-		CCNA_01477	0.47	+2.4
1,584,882	+		CCNA_01477	0.47	-0.2
1,584,900	+		CCNA_01477	0.49	+0.9
1,584,939	+		CCNA_01477	0.51	+0.6
1,584,939	+		CCNA_01477	0.51	-2.4
1,584,947	-		CCNA_01477	0.52	-1.3
1,584,947	-		CCNA_01477	0.52	-0.6
1,584,951	+		CCNA_01477	0.52	-1.8
1,584,951	+		CCNA_01477	0.52	+2.4
1,585,014	-		CCNA_01477	0.57	-2.2
1,585,062	+		CCNA_01477	0.60	-0.8
1,585,062	+		CCNA_01477	0.60	-0.4
1,585,062	+		CCNA_01477	0.60	-1.4
1,585,083	+		CCNA_01477	0.62	-0.2
1,585,093	+		CCNA_01477	0.63	-0.6
1,585,101	-		CCNA_01477	0.63	-1.4
1,585,121	+		CCNA_01477	0.65	-1.9
1,585,121	-		CCNA_01477	0.65	+2.4