Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT1867

Experiment: Varel_Bryant medium with Chlorpromazine 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT1865 and BT1866 are separated by 61 nucleotidesBT1866 and BT1867 are separated by 175 nucleotidesBT1867 and BT1868 are separated by 288 nucleotides BT1865: BT1865 - putative fiber protein (NCBI ptt file), at 2,343,852 to 2,344,463 BT1865 BT1866: BT1866 - hypothetical protein (NCBI ptt file), at 2,344,525 to 2,344,737 BT1866 BT1867: BT1867 - hypothetical protein (NCBI ptt file), at 2,344,913 to 2,345,278 BT1867 BT1868: BT1868 - conserved hypothetical protein (NCBI ptt file), at 2,345,567 to 2,347,219 BT1868 Position (kb) 2344 2345 2346Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2343.936 kb on - strand, within BT1865at 2344.880 kb on + strandat 2344.903 kb on - strandat 2344.903 kb on - strandat 2344.904 kb on + strandat 2344.904 kb on + strandat 2344.940 kb on - strandat 2344.959 kb on + strand, within BT1867at 2344.959 kb on + strand, within BT1867at 2344.959 kb on + strand, within BT1867at 2344.960 kb on - strand, within BT1867at 2344.991 kb on + strand, within BT1867at 2345.002 kb on + strand, within BT1867at 2345.005 kb on - strand, within BT1867at 2345.028 kb on - strand, within BT1867

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant medium with Chlorpromazine 0.0125 mM
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2,343,936 - BT1865 0.14 -0.6
2,344,880 + -3.2
2,344,903 - -1.0
2,344,903 - -1.4
2,344,904 + -1.0
2,344,904 + -1.3
2,344,940 - -2.0
2,344,959 + BT1867 0.13 -0.2
2,344,959 + BT1867 0.13 +0.7
2,344,959 + BT1867 0.13 -0.2
2,344,960 - BT1867 0.13 +1.0
2,344,991 + BT1867 0.21 -2.7
2,345,002 + BT1867 0.24 -2.5
2,345,005 - BT1867 0.25 -4.2
2,345,028 - BT1867 0.31 -0.6

Or see this region's nucleotide sequence