Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0731

Experiment: Varel_Bryant medium with Chlorpromazine 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0730 and BT0731 are separated by 150 nucleotidesBT0731 and BT0732 are separated by 202 nucleotidesBT0732 and BT0733 are separated by 12 nucleotides BT0730: BT0730 - putative mRNA-binding protein (NCBI ptt file), at 904,100 to 905,116 BT0730 BT0731: BT0731 - hypothetical protein (NCBI ptt file), at 905,267 to 905,803 BT0731 BT0732: BT0732 - two-component system response regulator (NCBI ptt file), at 906,006 to 906,701 BT0732 BT0733: BT0733 - two-component system sensor histidine kinase (NCBI ptt file), at 906,714 to 908,093 BT0733 Position (kb) 905 906Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 904.419 kb on - strand, within BT0730at 904.422 kb on + strand, within BT0730at 904.552 kb on + strand, within BT0730at 904.595 kb on - strand, within BT0730at 904.616 kb on - strand, within BT0730at 904.622 kb on - strand, within BT0730at 904.706 kb on + strand, within BT0730at 904.707 kb on - strand, within BT0730at 904.960 kb on + strand, within BT0730at 905.006 kb on + strand, within BT0730at 905.007 kb on - strand, within BT0730at 905.114 kb on + strandat 905.133 kb on + strandat 905.166 kb on + strandat 905.170 kb on - strandat 905.170 kb on - strandat 905.184 kb on - strandat 905.190 kb on + strandat 905.209 kb on - strandat 905.225 kb on - strandat 905.225 kb on - strandat 905.225 kb on - strandat 905.229 kb on + strandat 905.230 kb on - strandat 905.230 kb on - strandat 905.252 kb on + strandat 905.260 kb on - strandat 905.421 kb on + strand, within BT0731at 905.558 kb on - strand, within BT0731at 905.698 kb on + strand, within BT0731at 905.699 kb on - strand, within BT0731at 905.722 kb on + strand, within BT0731at 905.786 kb on + strandat 905.787 kb on - strandat 905.943 kb on - strandat 905.973 kb on + strandat 906.007 kb on + strandat 906.055 kb on - strandat 906.055 kb on - strandat 906.280 kb on + strand, within BT0732at 906.358 kb on - strand, within BT0732at 906.499 kb on - strand, within BT0732at 906.633 kb on - strandat 906.720 kb on - strandat 906.728 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant medium with Chlorpromazine 0.0125 mM
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904,419 - BT0730 0.31 -1.0
904,422 + BT0730 0.32 -1.4
904,552 + BT0730 0.44 +0.6
904,595 - BT0730 0.49 +0.0
904,616 - BT0730 0.51 -0.6
904,622 - BT0730 0.51 -0.3
904,706 + BT0730 0.60 -0.7
904,707 - BT0730 0.60 +0.0
904,960 + BT0730 0.85 +0.3
905,006 + BT0730 0.89 +0.0
905,007 - BT0730 0.89 -0.8
905,114 + -0.7
905,133 + +0.4
905,166 + -2.1
905,170 - +0.4
905,170 - -3.1
905,184 - +1.0
905,190 + -0.3
905,209 - +1.6
905,225 - -1.4
905,225 - -0.7
905,225 - -1.0
905,229 + -0.6
905,230 - +0.2
905,230 - -1.9
905,252 + -3.1
905,260 - -0.8
905,421 + BT0731 0.29 -1.3
905,558 - BT0731 0.54 -2.0
905,698 + BT0731 0.80 -1.8
905,699 - BT0731 0.80 -0.9
905,722 + BT0731 0.85 -0.6
905,786 + -1.2
905,787 - +1.0
905,943 - -1.0
905,973 + -1.3
906,007 + +1.0
906,055 - -1.7
906,055 - +1.0
906,280 + BT0732 0.39 +1.0
906,358 - BT0732 0.51 +1.8
906,499 - BT0732 0.71 -0.6
906,633 - -0.3
906,720 - -0.6
906,728 + +0.0

Or see this region's nucleotide sequence