Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0149

Experiment: Varel_Bryant medium with Chlorpromazine 0.0125 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBT0148 and BT0149 are separated by 217 nucleotidesBT0149 and BT0150 are separated by 38 nucleotides BT0148: BT0148 - putative hemolysin (NCBI ptt file), at 151,535 to 152,824 BT0148 BT0149: BT0149 - peptidase (NCBI ptt file), at 153,042 to 153,824 BT0149 BT0150: BT0150 - putative ferric aerobactin receptor (NCBI ptt file), at 153,863 to 156,241 BT0150 Position (kb) 153 154Strain fitness (log2 ratio) -2 -1 0 1 2at 152.094 kb on + strand, within BT0148at 152.104 kb on - strand, within BT0148at 152.485 kb on + strand, within BT0148at 152.496 kb on + strand, within BT0148at 152.542 kb on - strand, within BT0148at 152.608 kb on - strand, within BT0148at 152.798 kb on + strandat 152.798 kb on + strandat 152.807 kb on + strandat 152.843 kb on - strandat 152.897 kb on - strandat 152.937 kb on - strandat 152.959 kb on - strandat 152.993 kb on - strandat 152.993 kb on - strandat 153.071 kb on + strandat 153.132 kb on - strand, within BT0149at 153.167 kb on + strand, within BT0149at 153.185 kb on + strand, within BT0149at 153.186 kb on - strand, within BT0149at 153.229 kb on + strand, within BT0149at 153.371 kb on - strand, within BT0149at 153.533 kb on - strand, within BT0149at 153.534 kb on + strand, within BT0149at 153.554 kb on + strand, within BT0149at 153.562 kb on - strand, within BT0149at 153.632 kb on + strand, within BT0149at 153.653 kb on + strand, within BT0149at 153.653 kb on + strand, within BT0149at 153.655 kb on + strand, within BT0149at 153.655 kb on + strand, within BT0149at 153.656 kb on - strand, within BT0149at 153.690 kb on + strand, within BT0149at 153.802 kb on - strandat 153.805 kb on - strandat 153.851 kb on + strandat 153.864 kb on + strandat 153.990 kb on - strandat 153.990 kb on - strandat 154.051 kb on + strandat 154.052 kb on - strandat 154.134 kb on + strand, within BT0150at 154.197 kb on + strand, within BT0150at 154.221 kb on - strand, within BT0150at 154.222 kb on + strand, within BT0150at 154.342 kb on - strand, within BT0150at 154.619 kb on - strand, within BT0150at 154.696 kb on - strand, within BT0150at 154.801 kb on - strand, within BT0150

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant medium with Chlorpromazine 0.0125 mM
remove
152,094 + BT0148 0.43 -2.1
152,104 - BT0148 0.44 +2.3
152,485 + BT0148 0.74 -1.5
152,496 + BT0148 0.74 -2.7
152,542 - BT0148 0.78 +0.9
152,608 - BT0148 0.83 -0.7
152,798 + -1.7
152,798 + -1.4
152,807 + -0.8
152,843 - -2.2
152,897 - -0.3
152,937 - +0.5
152,959 - +0.9
152,993 - -2.2
152,993 - -1.5
153,071 + -0.2
153,132 - BT0149 0.11 -2.1
153,167 + BT0149 0.16 -0.8
153,185 + BT0149 0.18 +0.9
153,186 - BT0149 0.18 -1.7
153,229 + BT0149 0.24 -0.8
153,371 - BT0149 0.42 +0.9
153,533 - BT0149 0.63 -0.7
153,534 + BT0149 0.63 +0.9
153,554 + BT0149 0.65 -0.8
153,562 - BT0149 0.66 -0.7
153,632 + BT0149 0.75 -0.7
153,653 + BT0149 0.78 +1.9
153,653 + BT0149 0.78 +0.9
153,655 + BT0149 0.78 -0.7
153,655 + BT0149 0.78 +0.6
153,656 - BT0149 0.78 +1.9
153,690 + BT0149 0.83 +1.9
153,802 - -0.3
153,805 - +2.3
153,851 + -0.1
153,864 + -2.4
153,990 - +1.3
153,990 - -0.1
154,051 + +0.3
154,052 - -0.2
154,134 + BT0150 0.11 -1.7
154,197 + BT0150 0.14 -1.1
154,221 - BT0150 0.15 -1.6
154,222 + BT0150 0.15 +0.5
154,342 - BT0150 0.20 -0.1
154,619 - BT0150 0.32 +0.1
154,696 - BT0150 0.35 -1.4
154,801 - BT0150 0.39 -0.7

Or see this region's nucleotide sequence