Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT0095

Experiment: Varel_Bryant medium with Chlorpromazine 0.0125 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT0093 and BT0094 overlap by 4 nucleotidesBT0094 and BT0095 are separated by 11 nucleotidesBT0095 and BT0096 are separated by 164 nucleotidesBT0096 and BT0097 are separated by 1 nucleotides BT0093: BT0093 - conserved protein found in conjugate transposon (NCBI ptt file), at 85,435 to 87,939 BT0093 BT0094: BT0094 - conserved protein found in conjugate transposon (NCBI ptt file), at 87,936 to 88,262 BT0094 BT0095: BT0095 - conserved protein found in conjugate transposon (NCBI ptt file), at 88,274 to 88,570 BT0095 BT0096: BT0096 - hypothetical protein (NCBI ptt file), at 88,735 to 89,415 BT0096 BT0097: BT0097 - conserved protein found in conjugate transposon (NCBI ptt file), at 89,417 to 89,854 BT0097 Position (kb) 88 89Strain fitness (log2 ratio) -2 -1 0 1 2at 87.288 kb on + strand, within BT0093at 87.328 kb on - strand, within BT0093at 87.343 kb on - strand, within BT0093at 87.435 kb on + strand, within BT0093at 87.457 kb on - strand, within BT0093at 87.619 kb on + strand, within BT0093at 87.698 kb on + strandat 87.699 kb on - strandat 87.781 kb on + strandat 87.919 kb on - strandat 87.926 kb on - strandat 87.930 kb on + strandat 88.138 kb on + strand, within BT0094at 88.292 kb on + strandat 88.292 kb on + strandat 88.321 kb on + strand, within BT0095at 88.351 kb on + strand, within BT0095at 88.477 kb on + strand, within BT0095at 88.478 kb on - strand, within BT0095at 88.504 kb on + strand, within BT0095at 88.578 kb on - strandat 88.716 kb on + strandat 88.716 kb on + strandat 89.381 kb on + strandat 89.505 kb on + strand, within BT0097

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Per-strain Table

Position Strand Gene LocusTag Fraction Varel_Bryant medium with Chlorpromazine 0.0125 mM
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87,288 + BT0093 0.74 -1.1
87,328 - BT0093 0.76 -0.7
87,343 - BT0093 0.76 -0.7
87,435 + BT0093 0.80 -1.3
87,457 - BT0093 0.81 -0.1
87,619 + BT0093 0.87 -0.9
87,698 + -0.8
87,699 - +0.9
87,781 + -0.1
87,919 - -2.2
87,926 - +0.9
87,930 + -0.8
88,138 + BT0094 0.62 -1.2
88,292 + -0.2
88,292 + -1.1
88,321 + BT0095 0.16 -1.4
88,351 + BT0095 0.26 +0.2
88,477 + BT0095 0.68 -0.3
88,478 - BT0095 0.69 -0.1
88,504 + BT0095 0.77 -0.5
88,578 - +1.9
88,716 + -0.7
88,716 + -0.1
89,381 + -0.9
89,505 + BT0097 0.20 -2.4

Or see this region's nucleotide sequence