Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0045

Experiment: Pyruvate-Sulfite (60-20mM) with Chromate 50uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0044 and DVUA0045 overlap by 4 nucleotidesDVUA0045 and DVUA0046 overlap by 4 nucleotides DVUA0044: DVUA0044 - conserved hypothetical protein (TIGR), at 52,878 to 53,855 DVUA0044 DVUA0045: DVUA0045 - aminotransferase, DegT/DnrJ/EryC1/StrS family (TIGR), at 53,852 to 55,468 DVUA0045 DVUA0046: DVUA0046 - glycosyl transferase, group 2 family protein (TIGR), at 55,465 to 56,913 DVUA0046 Position (kb) 53 54 55 56Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 52.895 kb on + strandat 52.895 kb on + strandat 52.910 kb on - strandat 52.971 kb on + strandat 52.979 kb on - strand, within DVUA0044at 52.999 kb on - strand, within DVUA0044at 53.128 kb on - strand, within DVUA0044at 53.140 kb on + strand, within DVUA0044at 53.155 kb on + strand, within DVUA0044at 53.291 kb on + strand, within DVUA0044at 53.317 kb on + strand, within DVUA0044at 53.317 kb on + strand, within DVUA0044at 53.317 kb on + strand, within DVUA0044at 53.325 kb on - strand, within DVUA0044at 53.330 kb on - strand, within DVUA0044at 53.332 kb on + strand, within DVUA0044at 53.345 kb on - strand, within DVUA0044at 53.345 kb on - strand, within DVUA0044at 53.351 kb on + strand, within DVUA0044at 53.351 kb on + strand, within DVUA0044at 53.351 kb on + strand, within DVUA0044at 53.359 kb on - strand, within DVUA0044at 53.433 kb on - strand, within DVUA0044at 53.754 kb on - strand, within DVUA0044at 53.845 kb on - strandat 53.867 kb on - strandat 53.992 kb on + strandat 54.010 kb on - strandat 54.019 kb on - strand, within DVUA0045at 54.021 kb on + strand, within DVUA0045at 54.055 kb on - strand, within DVUA0045at 54.078 kb on + strand, within DVUA0045at 54.177 kb on - strand, within DVUA0045at 54.342 kb on + strand, within DVUA0045at 54.361 kb on + strand, within DVUA0045at 54.385 kb on + strand, within DVUA0045at 54.403 kb on + strand, within DVUA0045at 54.406 kb on - strand, within DVUA0045at 54.411 kb on - strand, within DVUA0045at 54.411 kb on - strand, within DVUA0045at 54.460 kb on + strand, within DVUA0045at 54.566 kb on + strand, within DVUA0045at 54.566 kb on + strand, within DVUA0045at 54.579 kb on - strand, within DVUA0045at 54.667 kb on + strand, within DVUA0045at 54.685 kb on - strand, within DVUA0045at 54.735 kb on + strand, within DVUA0045at 54.745 kb on + strand, within DVUA0045at 54.745 kb on + strand, within DVUA0045at 54.753 kb on - strand, within DVUA0045at 54.753 kb on - strand, within DVUA0045at 54.753 kb on - strand, within DVUA0045at 54.753 kb on - strand, within DVUA0045at 54.758 kb on - strand, within DVUA0045at 54.768 kb on - strand, within DVUA0045at 54.824 kb on + strand, within DVUA0045at 54.826 kb on + strand, within DVUA0045at 54.834 kb on - strand, within DVUA0045at 54.904 kb on - strand, within DVUA0045at 55.016 kb on + strand, within DVUA0045at 55.149 kb on - strand, within DVUA0045at 55.149 kb on - strand, within DVUA0045at 55.149 kb on - strand, within DVUA0045at 55.149 kb on - strand, within DVUA0045at 55.198 kb on + strand, within DVUA0045at 55.199 kb on + strand, within DVUA0045at 55.501 kb on + strandat 55.642 kb on + strand, within DVUA0046at 55.642 kb on + strand, within DVUA0046at 55.665 kb on - strand, within DVUA0046at 55.665 kb on - strand, within DVUA0046at 55.665 kb on - strand, within DVUA0046at 55.729 kb on + strand, within DVUA0046at 55.749 kb on - strand, within DVUA0046at 55.751 kb on + strand, within DVUA0046at 55.829 kb on + strand, within DVUA0046at 55.841 kb on + strand, within DVUA0046at 55.849 kb on - strand, within DVUA0046at 55.849 kb on - strand, within DVUA0046at 55.981 kb on + strand, within DVUA0046at 56.025 kb on + strand, within DVUA0046at 56.162 kb on + strand, within DVUA0046at 56.170 kb on - strand, within DVUA0046at 56.229 kb on - strand, within DVUA0046at 56.274 kb on + strand, within DVUA0046at 56.274 kb on + strand, within DVUA0046at 56.279 kb on + strand, within DVUA0046at 56.279 kb on + strand, within DVUA0046at 56.282 kb on + strand, within DVUA0046at 56.356 kb on + strand, within DVUA0046at 56.397 kb on + strand, within DVUA0046

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Chromate 50uM
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52,895 + -1.4
52,895 + -1.3
52,910 - -0.2
52,971 + -0.9
52,979 - DVUA0044 0.10 -0.3
52,999 - DVUA0044 0.12 -1.3
53,128 - DVUA0044 0.26 -0.6
53,140 + DVUA0044 0.27 -0.6
53,155 + DVUA0044 0.28 -4.5
53,291 + DVUA0044 0.42 +0.5
53,317 + DVUA0044 0.45 -0.4
53,317 + DVUA0044 0.45 -2.5
53,317 + DVUA0044 0.45 -0.1
53,325 - DVUA0044 0.46 +0.3
53,330 - DVUA0044 0.46 -1.3
53,332 + DVUA0044 0.46 +0.1
53,345 - DVUA0044 0.48 +0.0
53,345 - DVUA0044 0.48 -0.9
53,351 + DVUA0044 0.48 -1.5
53,351 + DVUA0044 0.48 +0.2
53,351 + DVUA0044 0.48 +0.7
53,359 - DVUA0044 0.49 -1.4
53,433 - DVUA0044 0.57 +2.3
53,754 - DVUA0044 0.90 +0.9
53,845 - -0.2
53,867 - +0.2
53,992 + -2.3
54,010 - -0.8
54,019 - DVUA0045 0.10 -0.5
54,021 + DVUA0045 0.10 -0.3
54,055 - DVUA0045 0.13 -0.7
54,078 + DVUA0045 0.14 +2.3
54,177 - DVUA0045 0.20 +0.0
54,342 + DVUA0045 0.30 -0.2
54,361 + DVUA0045 0.31 -0.1
54,385 + DVUA0045 0.33 -0.3
54,403 + DVUA0045 0.34 -1.3
54,406 - DVUA0045 0.34 -1.8
54,411 - DVUA0045 0.35 +0.2
54,411 - DVUA0045 0.35 -0.3
54,460 + DVUA0045 0.38 -0.9
54,566 + DVUA0045 0.44 -0.1
54,566 + DVUA0045 0.44 -5.3
54,579 - DVUA0045 0.45 +1.5
54,667 + DVUA0045 0.50 -0.4
54,685 - DVUA0045 0.52 -0.1
54,735 + DVUA0045 0.55 -0.7
54,745 + DVUA0045 0.55 -0.0
54,745 + DVUA0045 0.55 -0.4
54,753 - DVUA0045 0.56 -0.5
54,753 - DVUA0045 0.56 -0.5
54,753 - DVUA0045 0.56 -0.9
54,753 - DVUA0045 0.56 -0.9
54,758 - DVUA0045 0.56 -0.1
54,768 - DVUA0045 0.57 -1.3
54,824 + DVUA0045 0.60 -1.1
54,826 + DVUA0045 0.60 -0.4
54,834 - DVUA0045 0.61 +0.2
54,904 - DVUA0045 0.65 -0.8
55,016 + DVUA0045 0.72 -3.3
55,149 - DVUA0045 0.80 -1.6
55,149 - DVUA0045 0.80 -4.5
55,149 - DVUA0045 0.80 -0.2
55,149 - DVUA0045 0.80 -1.3
55,198 + DVUA0045 0.83 -1.9
55,199 + DVUA0045 0.83 -0.1
55,501 + -1.6
55,642 + DVUA0046 0.12 -1.1
55,642 + DVUA0046 0.12 +1.3
55,665 - DVUA0046 0.14 +0.7
55,665 - DVUA0046 0.14 +0.7
55,665 - DVUA0046 0.14 -1.6
55,729 + DVUA0046 0.18 -0.1
55,749 - DVUA0046 0.20 -1.7
55,751 + DVUA0046 0.20 -0.6
55,829 + DVUA0046 0.25 +0.8
55,841 + DVUA0046 0.26 -0.5
55,849 - DVUA0046 0.27 +2.0
55,849 - DVUA0046 0.27 -0.7
55,981 + DVUA0046 0.36 -0.2
56,025 + DVUA0046 0.39 -0.7
56,162 + DVUA0046 0.48 -0.4
56,170 - DVUA0046 0.49 +0.3
56,229 - DVUA0046 0.53 -0.4
56,274 + DVUA0046 0.56 +1.3
56,274 + DVUA0046 0.56 -2.7
56,279 + DVUA0046 0.56 -0.7
56,279 + DVUA0046 0.56 -0.1
56,282 + DVUA0046 0.56 -0.2
56,356 + DVUA0046 0.61 +0.3
56,397 + DVUA0046 0.64 -0.3

Or see this region's nucleotide sequence