Experiment: Pyruvate-Sulfite (60-20mM) with Chromate 50uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVUA0062 and DVUA0063 are separated by 56 nucleotides DVUA0063 and DVUA0063.1 overlap by 4 nucleotides
DVUA0062: DVUA0062 - conserved domain protein (TIGR), at 77,184 to 78,479
DVUA0062
DVUA0063: DVUA0063 - Orn/DAP/Arg family decarboxylase (TIGR), at 78,536 to 80,092
DVUA0063
DVUA0063.1: DVUA0063.1 - SEED: FIG00604587: hypothetical protein, at 80,089 to 81,096
DVUA0063.1
Position (kb) 78
79
80
81 Strain fitness (log2 ratio) -2
-1
0
1
2 at 77.576 kb on + strand, within DVUA0062 at 77.576 kb on + strand, within DVUA0062 at 77.639 kb on + strand, within DVUA0062 at 77.752 kb on - strand, within DVUA0062 at 77.772 kb on + strand, within DVUA0062 at 77.813 kb on - strand, within DVUA0062 at 77.850 kb on - strand, within DVUA0062 at 77.884 kb on - strand, within DVUA0062 at 77.922 kb on + strand, within DVUA0062 at 78.033 kb on + strand, within DVUA0062 at 78.092 kb on - strand, within DVUA0062 at 78.097 kb on - strand, within DVUA0062 at 78.236 kb on + strand, within DVUA0062 at 78.241 kb on - strand, within DVUA0062 at 78.261 kb on - strand, within DVUA0062 at 78.311 kb on + strand, within DVUA0062 at 78.547 kb on - strand at 78.633 kb on + strand at 78.794 kb on - strand, within DVUA0063 at 78.808 kb on + strand, within DVUA0063 at 78.828 kb on + strand, within DVUA0063 at 78.848 kb on - strand, within DVUA0063 at 78.848 kb on - strand, within DVUA0063 at 78.865 kb on + strand, within DVUA0063 at 79.093 kb on - strand, within DVUA0063 at 79.138 kb on - strand, within DVUA0063 at 79.160 kb on + strand, within DVUA0063 at 79.289 kb on + strand, within DVUA0063 at 79.318 kb on - strand, within DVUA0063 at 79.324 kb on + strand, within DVUA0063 at 79.449 kb on + strand, within DVUA0063 at 79.449 kb on + strand, within DVUA0063 at 79.454 kb on + strand, within DVUA0063 at 79.498 kb on - strand, within DVUA0063 at 79.535 kb on - strand, within DVUA0063 at 79.570 kb on + strand, within DVUA0063 at 79.578 kb on - strand, within DVUA0063 at 79.619 kb on - strand, within DVUA0063 at 79.639 kb on + strand, within DVUA0063 at 79.655 kb on + strand, within DVUA0063 at 79.661 kb on + strand, within DVUA0063 at 79.667 kb on - strand, within DVUA0063 at 79.670 kb on + strand, within DVUA0063 at 79.678 kb on - strand, within DVUA0063 at 79.772 kb on + strand, within DVUA0063 at 79.902 kb on + strand, within DVUA0063 at 79.940 kb on - strand at 79.966 kb on + strand at 79.975 kb on + strand at 80.000 kb on + strand at 80.044 kb on - strand at 80.067 kb on - strand at 80.085 kb on + strand at 80.096 kb on + strand at 80.106 kb on + strand at 80.225 kb on - strand, within DVUA0063.1 at 80.421 kb on + strand, within DVUA0063.1 at 80.468 kb on - strand, within DVUA0063.1 at 80.477 kb on - strand, within DVUA0063.1 at 80.505 kb on + strand, within DVUA0063.1 at 80.505 kb on + strand, within DVUA0063.1 at 80.513 kb on - strand, within DVUA0063.1 at 80.513 kb on - strand, within DVUA0063.1 at 80.528 kb on + strand, within DVUA0063.1 at 80.559 kb on - strand, within DVUA0063.1 at 80.561 kb on + strand, within DVUA0063.1 at 80.561 kb on + strand, within DVUA0063.1 at 80.561 kb on + strand, within DVUA0063.1 at 80.568 kb on - strand, within DVUA0063.1 at 80.569 kb on - strand, within DVUA0063.1 at 80.569 kb on - strand, within DVUA0063.1 at 80.569 kb on - strand, within DVUA0063.1 at 80.615 kb on - strand, within DVUA0063.1 at 80.936 kb on - strand, within DVUA0063.1 at 80.951 kb on + strand, within DVUA0063.1
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Chromate 50uM remove 77,576 + DVUA0062 0.30 -0.7 77,576 + DVUA0062 0.30 -0.8 77,639 + DVUA0062 0.35 +1.0 77,752 - DVUA0062 0.44 +0.5 77,772 + DVUA0062 0.45 -0.7 77,813 - DVUA0062 0.49 +0.6 77,850 - DVUA0062 0.51 -1.6 77,884 - DVUA0062 0.54 +1.3 77,922 + DVUA0062 0.57 -1.0 78,033 + DVUA0062 0.66 -0.9 78,092 - DVUA0062 0.70 -0.3 78,097 - DVUA0062 0.70 +0.2 78,236 + DVUA0062 0.81 -2.2 78,241 - DVUA0062 0.82 -0.3 78,261 - DVUA0062 0.83 -0.7 78,311 + DVUA0062 0.87 -1.6 78,547 - +0.6 78,633 + -0.9 78,794 - DVUA0063 0.17 +0.7 78,808 + DVUA0063 0.17 +1.7 78,828 + DVUA0063 0.19 -0.4 78,848 - DVUA0063 0.20 +0.2 78,848 - DVUA0063 0.20 +1.0 78,865 + DVUA0063 0.21 -0.8 79,093 - DVUA0063 0.36 -0.6 79,138 - DVUA0063 0.39 -0.3 79,160 + DVUA0063 0.40 -1.9 79,289 + DVUA0063 0.48 -0.3 79,318 - DVUA0063 0.50 -0.4 79,324 + DVUA0063 0.51 +0.2 79,449 + DVUA0063 0.59 +0.1 79,449 + DVUA0063 0.59 +0.2 79,454 + DVUA0063 0.59 +0.0 79,498 - DVUA0063 0.62 +0.0 79,535 - DVUA0063 0.64 -0.8 79,570 + DVUA0063 0.66 -0.0 79,578 - DVUA0063 0.67 -1.0 79,619 - DVUA0063 0.70 -2.1 79,639 + DVUA0063 0.71 -1.9 79,655 + DVUA0063 0.72 -0.6 79,661 + DVUA0063 0.72 +0.4 79,667 - DVUA0063 0.73 -1.5 79,670 + DVUA0063 0.73 -0.2 79,678 - DVUA0063 0.73 +0.7 79,772 + DVUA0063 0.79 +0.0 79,902 + DVUA0063 0.88 -0.0 79,940 - -0.1 79,966 + +0.1 79,975 + +0.1 80,000 + -1.4 80,044 - +0.7 80,067 - -0.5 80,085 + -1.2 80,096 + -1.4 80,106 + +1.0 80,225 - DVUA0063.1 0.13 +0.6 80,421 + DVUA0063.1 0.33 -0.3 80,468 - DVUA0063.1 0.38 +0.6 80,477 - DVUA0063.1 0.38 +1.9 80,505 + DVUA0063.1 0.41 -2.1 80,505 + DVUA0063.1 0.41 +0.7 80,513 - DVUA0063.1 0.42 +0.1 80,513 - DVUA0063.1 0.42 -1.0 80,528 + DVUA0063.1 0.44 -0.3 80,559 - DVUA0063.1 0.47 -0.4 80,561 + DVUA0063.1 0.47 +0.8 80,561 + DVUA0063.1 0.47 +1.7 80,561 + DVUA0063.1 0.47 +0.3 80,568 - DVUA0063.1 0.48 -0.0 80,569 - DVUA0063.1 0.48 +1.3 80,569 - DVUA0063.1 0.48 +2.0 80,569 - DVUA0063.1 0.48 +1.3 80,615 - DVUA0063.1 0.52 +2.3 80,936 - DVUA0063.1 0.84 +2.3 80,951 + DVUA0063.1 0.86 +0.6
Or see this region's nucleotide sequence