Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVUA0069

Experiment: Pyruvate-Sulfite (60-20mM) with Chromate 50uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVUA0068 and DORF526 are separated by 43 nucleotidesDORF526 and DVUA0069 overlap by 118 nucleotidesDVUA0069 and DVUA0070 are separated by 62 nucleotides DVUA0068: DVUA0068 - membrane protein, putative (TIGR), at 88,333 to 90,315 DVUA0068 DORF526: DORF526 - SEED: FIG00606858: hypothetical protein, at 90,359 to 90,988 DORF526 DVUA0069: DVUA0069 - GtrA family protein, selenocysteine-containing (TIGR), at 90,871 to 92,028 DVUA0069 DVUA0070: DVUA0070 - conserved domain protein (TIGR), at 92,091 to 94,022 DVUA0070 Position (kb) 90 91 92 93Strain fitness (log2 ratio) -2 -1 0 1 2at 89.992 kb on + strand, within DVUA0068at 90.058 kb on + strand, within DVUA0068at 90.066 kb on - strand, within DVUA0068at 90.070 kb on + strand, within DVUA0068at 90.103 kb on - strand, within DVUA0068at 90.103 kb on - strand, within DVUA0068at 90.159 kb on - strandat 90.180 kb on - strandat 90.279 kb on + strandat 90.279 kb on + strandat 90.366 kb on + strandat 90.411 kb on - strandat 90.421 kb on + strandat 90.421 kb on + strandat 90.421 kb on + strandat 90.479 kb on + strand, within DORF526at 90.526 kb on + strand, within DORF526at 90.534 kb on - strand, within DORF526at 90.581 kb on - strand, within DORF526at 90.590 kb on - strand, within DORF526at 90.638 kb on + strand, within DORF526at 90.647 kb on - strand, within DORF526at 90.649 kb on + strand, within DORF526at 90.657 kb on - strand, within DORF526at 90.720 kb on + strand, within DORF526at 90.761 kb on + strand, within DORF526at 90.789 kb on + strand, within DORF526at 90.859 kb on + strand, within DORF526at 90.974 kb on - strandat 91.001 kb on + strand, within DVUA0069at 91.112 kb on - strand, within DVUA0069at 91.231 kb on - strand, within DVUA0069at 91.231 kb on - strand, within DVUA0069at 91.275 kb on + strand, within DVUA0069at 91.323 kb on - strand, within DVUA0069at 91.345 kb on - strand, within DVUA0069at 91.364 kb on + strand, within DVUA0069at 91.400 kb on - strand, within DVUA0069at 91.475 kb on + strand, within DVUA0069at 91.525 kb on - strand, within DVUA0069at 91.590 kb on - strand, within DVUA0069at 91.615 kb on + strand, within DVUA0069at 91.741 kb on + strand, within DVUA0069at 91.778 kb on + strand, within DVUA0069at 91.831 kb on - strand, within DVUA0069at 91.860 kb on - strand, within DVUA0069at 91.910 kb on + strand, within DVUA0069at 91.925 kb on + strandat 91.938 kb on - strandat 92.058 kb on + strandat 92.344 kb on - strand, within DVUA0070at 92.854 kb on + strand, within DVUA0070at 92.911 kb on + strand, within DVUA0070at 92.941 kb on + strand, within DVUA0070

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Chromate 50uM
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89,992 + DVUA0068 0.84 -0.8
90,058 + DVUA0068 0.87 -1.8
90,066 - DVUA0068 0.87 -0.8
90,070 + DVUA0068 0.88 -0.2
90,103 - DVUA0068 0.89 -0.5
90,103 - DVUA0068 0.89 +0.5
90,159 - -0.1
90,180 - -0.1
90,279 + +1.7
90,279 + -0.4
90,366 + +0.0
90,411 - -0.9
90,421 + -0.3
90,421 + -0.3
90,421 + +0.0
90,479 + DORF526 0.19 -0.2
90,526 + DORF526 0.27 -0.8
90,534 - DORF526 0.28 -2.3
90,581 - DORF526 0.35 +0.7
90,590 - DORF526 0.37 +0.6
90,638 + DORF526 0.44 +0.2
90,647 - DORF526 0.46 +0.3
90,649 + DORF526 0.46 -0.5
90,657 - DORF526 0.47 +0.5
90,720 + DORF526 0.57 -0.6
90,761 + DORF526 0.64 -0.7
90,789 + DORF526 0.68 +0.5
90,859 + DORF526 0.79 -1.0
90,974 - -0.6
91,001 + DVUA0069 0.11 -0.9
91,112 - DVUA0069 0.21 -0.4
91,231 - DVUA0069 0.31 -1.3
91,231 - DVUA0069 0.31 +0.7
91,275 + DVUA0069 0.35 +0.0
91,323 - DVUA0069 0.39 -0.7
91,345 - DVUA0069 0.41 -2.1
91,364 + DVUA0069 0.43 -1.0
91,400 - DVUA0069 0.46 -0.8
91,475 + DVUA0069 0.52 +0.0
91,525 - DVUA0069 0.56 -1.3
91,590 - DVUA0069 0.62 -1.4
91,615 + DVUA0069 0.64 -1.3
91,741 + DVUA0069 0.75 +1.0
91,778 + DVUA0069 0.78 +0.1
91,831 - DVUA0069 0.83 +0.1
91,860 - DVUA0069 0.85 -0.6
91,910 + DVUA0069 0.90 -0.8
91,925 + +0.2
91,938 - -0.3
92,058 + -0.9
92,344 - DVUA0070 0.13 -0.5
92,854 + DVUA0070 0.39 +0.5
92,911 + DVUA0070 0.42 +2.3
92,941 + DVUA0070 0.44 -0.2

Or see this region's nucleotide sequence