Experiment: Pyruvate-Sulfite (60-20mM) with Chromate 50uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DVU3324 and DVU3325 are separated by 79 nucleotides DVU3325 and DVU3326 are separated by 255 nucleotides DVU3326 and DVU3327 are separated by 8 nucleotides
DVU3324: DVU3324 - ABC transporter, ATP-binding protein (TIGR), at 3,501,366 to 3,502,031
DVU3324
DVU3325: DVU3325 - hypothetical protein (TIGR), at 3,502,111 to 3,502,167
DVU3325
DVU3326: DVU3326 - multidrug resistance protein, Smr family (TIGR), at 3,502,423 to 3,502,743
DVU3326
DVU3327: DVU3327 - multidrug resistance protein, Smr family (TIGR), at 3,502,752 to 3,503,135
DVU3327
Position (kb)
3502
3503 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 3501.423 kb on + strand at 3501.423 kb on - strand at 3501.423 kb on - strand at 3501.423 kb on - strand at 3501.423 kb on - strand at 3501.425 kb on + strand at 3501.433 kb on - strand, within DVU3324 at 3501.511 kb on - strand, within DVU3324 at 3501.556 kb on - strand, within DVU3324 at 3501.558 kb on + strand, within DVU3324 at 3501.566 kb on - strand, within DVU3324 at 3501.635 kb on + strand, within DVU3324 at 3501.648 kb on + strand, within DVU3324 at 3501.702 kb on - strand, within DVU3324 at 3501.738 kb on + strand, within DVU3324 at 3501.852 kb on - strand, within DVU3324 at 3501.878 kb on + strand, within DVU3324 at 3501.926 kb on + strand, within DVU3324 at 3501.931 kb on + strand, within DVU3324 at 3501.936 kb on + strand, within DVU3324 at 3501.954 kb on + strand, within DVU3324 at 3501.962 kb on - strand, within DVU3324 at 3501.962 kb on - strand, within DVU3324 at 3502.016 kb on + strand at 3502.056 kb on - strand at 3502.114 kb on - strand at 3502.129 kb on + strand, within DVU3325 at 3502.137 kb on - strand, within DVU3325 at 3502.151 kb on - strand, within DVU3325 at 3502.196 kb on + strand at 3502.280 kb on + strand at 3502.313 kb on - strand at 3502.334 kb on - strand at 3502.336 kb on + strand at 3502.424 kb on - strand at 3502.430 kb on + strand at 3502.440 kb on - strand at 3502.484 kb on + strand, within DVU3326 at 3502.531 kb on - strand, within DVU3326 at 3502.554 kb on + strand, within DVU3326 at 3502.579 kb on + strand, within DVU3326 at 3502.595 kb on - strand, within DVU3326 at 3502.603 kb on + strand, within DVU3326 at 3502.604 kb on + strand, within DVU3326 at 3502.660 kb on - strand, within DVU3326 at 3502.798 kb on + strand, within DVU3327 at 3502.821 kb on - strand, within DVU3327 at 3502.821 kb on - strand, within DVU3327 at 3502.832 kb on + strand, within DVU3327 at 3502.917 kb on - strand, within DVU3327 at 3502.919 kb on + strand, within DVU3327 at 3502.926 kb on + strand, within DVU3327 at 3502.934 kb on + strand, within DVU3327 at 3502.952 kb on - strand, within DVU3327 at 3502.952 kb on - strand, within DVU3327 at 3503.071 kb on + strand, within DVU3327 at 3503.133 kb on + strand at 3503.133 kb on - strand at 3503.218 kb on + strand at 3503.218 kb on + strand at 3503.296 kb on + strand at 3503.318 kb on + strand at 3503.333 kb on + strand at 3503.346 kb on - strand at 3503.375 kb on - strand at 3503.391 kb on - strand at 3503.391 kb on - strand at 3503.391 kb on - strand at 3503.393 kb on - strand at 3503.393 kb on - strand at 3503.480 kb on - strand at 3503.526 kb on - strand at 3503.587 kb on - strand at 3503.597 kb on + strand at 3503.600 kb on - strand at 3503.661 kb on - strand at 3503.700 kb on + strand at 3503.700 kb on + strand at 3503.700 kb on + strand at 3503.703 kb on - strand at 3503.708 kb on - strand at 3503.708 kb on - strand at 3503.708 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Chromate 50uM remove 3,501,423 + -0.6 3,501,423 - -1.5 3,501,423 - -0.1 3,501,423 - +0.6 3,501,423 - -0.8 3,501,425 + +1.0 3,501,433 - DVU3324 0.10 +0.2 3,501,511 - DVU3324 0.22 -0.7 3,501,556 - DVU3324 0.29 -0.0 3,501,558 + DVU3324 0.29 -1.0 3,501,566 - DVU3324 0.30 +0.2 3,501,635 + DVU3324 0.40 -0.7 3,501,648 + DVU3324 0.42 +1.2 3,501,702 - DVU3324 0.50 +0.3 3,501,738 + DVU3324 0.56 +0.4 3,501,852 - DVU3324 0.73 +0.7 3,501,878 + DVU3324 0.77 +1.0 3,501,926 + DVU3324 0.84 +0.2 3,501,931 + DVU3324 0.85 -0.5 3,501,936 + DVU3324 0.86 -1.6 3,501,954 + DVU3324 0.88 -5.6 3,501,962 - DVU3324 0.89 -0.6 3,501,962 - DVU3324 0.89 +0.7 3,502,016 + -0.5 3,502,056 - +0.4 3,502,114 - +0.8 3,502,129 + DVU3325 0.32 +0.2 3,502,137 - DVU3325 0.46 -0.8 3,502,151 - DVU3325 0.70 -0.1 3,502,196 + +0.2 3,502,280 + +0.0 3,502,313 - -1.0 3,502,334 - +0.3 3,502,336 + -0.2 3,502,424 - -0.2 3,502,430 + +0.1 3,502,440 - +0.1 3,502,484 + DVU3326 0.19 -1.1 3,502,531 - DVU3326 0.34 -0.6 3,502,554 + DVU3326 0.41 -1.4 3,502,579 + DVU3326 0.49 +1.7 3,502,595 - DVU3326 0.54 +0.7 3,502,603 + DVU3326 0.56 -1.7 3,502,604 + DVU3326 0.56 -1.2 3,502,660 - DVU3326 0.74 -1.0 3,502,798 + DVU3327 0.12 -1.0 3,502,821 - DVU3327 0.18 +0.7 3,502,821 - DVU3327 0.18 -0.0 3,502,832 + DVU3327 0.21 +0.3 3,502,917 - DVU3327 0.43 -0.6 3,502,919 + DVU3327 0.43 -0.1 3,502,926 + DVU3327 0.45 +2.0 3,502,934 + DVU3327 0.47 -0.7 3,502,952 - DVU3327 0.52 -0.0 3,502,952 - DVU3327 0.52 +0.2 3,503,071 + DVU3327 0.83 -0.7 3,503,133 + -1.8 3,503,133 - +0.1 3,503,218 + +0.5 3,503,218 + +0.2 3,503,296 + -0.1 3,503,318 + +0.3 3,503,333 + -0.5 3,503,346 - +0.3 3,503,375 - -0.5 3,503,391 - -0.3 3,503,391 - -0.8 3,503,391 - -1.1 3,503,393 - +0.3 3,503,393 - -1.5 3,503,480 - -1.8 3,503,526 - +0.1 3,503,587 - +0.4 3,503,597 + -0.4 3,503,600 - -0.5 3,503,661 - -0.1 3,503,700 + -2.3 3,503,700 + -0.0 3,503,700 + +0.7 3,503,703 - -0.2 3,503,708 - -1.0 3,503,708 - +0.2 3,503,708 - -1.4
Or see this region's nucleotide sequence