Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3326

Experiment: Pyruvate-Sulfite (60-20mM) with Chromate 50uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU3324 and DVU3325 are separated by 79 nucleotidesDVU3325 and DVU3326 are separated by 255 nucleotidesDVU3326 and DVU3327 are separated by 8 nucleotides DVU3324: DVU3324 - ABC transporter, ATP-binding protein (TIGR), at 3,501,366 to 3,502,031 DVU3324 DVU3325: DVU3325 - hypothetical protein (TIGR), at 3,502,111 to 3,502,167 DVU3325 DVU3326: DVU3326 - multidrug resistance protein, Smr family (TIGR), at 3,502,423 to 3,502,743 DVU3326 DVU3327: DVU3327 - multidrug resistance protein, Smr family (TIGR), at 3,502,752 to 3,503,135 DVU3327 Position (kb) 3502 3503Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 3501.423 kb on + strandat 3501.423 kb on - strandat 3501.423 kb on - strandat 3501.423 kb on - strandat 3501.423 kb on - strandat 3501.425 kb on + strandat 3501.433 kb on - strand, within DVU3324at 3501.511 kb on - strand, within DVU3324at 3501.556 kb on - strand, within DVU3324at 3501.558 kb on + strand, within DVU3324at 3501.566 kb on - strand, within DVU3324at 3501.635 kb on + strand, within DVU3324at 3501.648 kb on + strand, within DVU3324at 3501.702 kb on - strand, within DVU3324at 3501.738 kb on + strand, within DVU3324at 3501.852 kb on - strand, within DVU3324at 3501.878 kb on + strand, within DVU3324at 3501.926 kb on + strand, within DVU3324at 3501.931 kb on + strand, within DVU3324at 3501.936 kb on + strand, within DVU3324at 3501.954 kb on + strand, within DVU3324at 3501.962 kb on - strand, within DVU3324at 3501.962 kb on - strand, within DVU3324at 3502.016 kb on + strandat 3502.056 kb on - strandat 3502.114 kb on - strandat 3502.129 kb on + strand, within DVU3325at 3502.137 kb on - strand, within DVU3325at 3502.151 kb on - strand, within DVU3325at 3502.196 kb on + strandat 3502.280 kb on + strandat 3502.313 kb on - strandat 3502.334 kb on - strandat 3502.336 kb on + strandat 3502.424 kb on - strandat 3502.430 kb on + strandat 3502.440 kb on - strandat 3502.484 kb on + strand, within DVU3326at 3502.531 kb on - strand, within DVU3326at 3502.554 kb on + strand, within DVU3326at 3502.579 kb on + strand, within DVU3326at 3502.595 kb on - strand, within DVU3326at 3502.603 kb on + strand, within DVU3326at 3502.604 kb on + strand, within DVU3326at 3502.660 kb on - strand, within DVU3326at 3502.798 kb on + strand, within DVU3327at 3502.821 kb on - strand, within DVU3327at 3502.821 kb on - strand, within DVU3327at 3502.832 kb on + strand, within DVU3327at 3502.917 kb on - strand, within DVU3327at 3502.919 kb on + strand, within DVU3327at 3502.926 kb on + strand, within DVU3327at 3502.934 kb on + strand, within DVU3327at 3502.952 kb on - strand, within DVU3327at 3502.952 kb on - strand, within DVU3327at 3503.071 kb on + strand, within DVU3327at 3503.133 kb on + strandat 3503.133 kb on - strandat 3503.218 kb on + strandat 3503.218 kb on + strandat 3503.296 kb on + strandat 3503.318 kb on + strandat 3503.333 kb on + strandat 3503.346 kb on - strandat 3503.375 kb on - strandat 3503.391 kb on - strandat 3503.391 kb on - strandat 3503.391 kb on - strandat 3503.393 kb on - strandat 3503.393 kb on - strandat 3503.480 kb on - strandat 3503.526 kb on - strandat 3503.587 kb on - strandat 3503.597 kb on + strandat 3503.600 kb on - strandat 3503.661 kb on - strandat 3503.700 kb on + strandat 3503.700 kb on + strandat 3503.700 kb on + strandat 3503.703 kb on - strandat 3503.708 kb on - strandat 3503.708 kb on - strandat 3503.708 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Chromate 50uM
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3,501,423 + -0.6
3,501,423 - -1.5
3,501,423 - -0.1
3,501,423 - +0.6
3,501,423 - -0.8
3,501,425 + +1.0
3,501,433 - DVU3324 0.10 +0.2
3,501,511 - DVU3324 0.22 -0.7
3,501,556 - DVU3324 0.29 -0.0
3,501,558 + DVU3324 0.29 -1.0
3,501,566 - DVU3324 0.30 +0.2
3,501,635 + DVU3324 0.40 -0.7
3,501,648 + DVU3324 0.42 +1.2
3,501,702 - DVU3324 0.50 +0.3
3,501,738 + DVU3324 0.56 +0.4
3,501,852 - DVU3324 0.73 +0.7
3,501,878 + DVU3324 0.77 +1.0
3,501,926 + DVU3324 0.84 +0.2
3,501,931 + DVU3324 0.85 -0.5
3,501,936 + DVU3324 0.86 -1.6
3,501,954 + DVU3324 0.88 -5.6
3,501,962 - DVU3324 0.89 -0.6
3,501,962 - DVU3324 0.89 +0.7
3,502,016 + -0.5
3,502,056 - +0.4
3,502,114 - +0.8
3,502,129 + DVU3325 0.32 +0.2
3,502,137 - DVU3325 0.46 -0.8
3,502,151 - DVU3325 0.70 -0.1
3,502,196 + +0.2
3,502,280 + +0.0
3,502,313 - -1.0
3,502,334 - +0.3
3,502,336 + -0.2
3,502,424 - -0.2
3,502,430 + +0.1
3,502,440 - +0.1
3,502,484 + DVU3326 0.19 -1.1
3,502,531 - DVU3326 0.34 -0.6
3,502,554 + DVU3326 0.41 -1.4
3,502,579 + DVU3326 0.49 +1.7
3,502,595 - DVU3326 0.54 +0.7
3,502,603 + DVU3326 0.56 -1.7
3,502,604 + DVU3326 0.56 -1.2
3,502,660 - DVU3326 0.74 -1.0
3,502,798 + DVU3327 0.12 -1.0
3,502,821 - DVU3327 0.18 +0.7
3,502,821 - DVU3327 0.18 -0.0
3,502,832 + DVU3327 0.21 +0.3
3,502,917 - DVU3327 0.43 -0.6
3,502,919 + DVU3327 0.43 -0.1
3,502,926 + DVU3327 0.45 +2.0
3,502,934 + DVU3327 0.47 -0.7
3,502,952 - DVU3327 0.52 -0.0
3,502,952 - DVU3327 0.52 +0.2
3,503,071 + DVU3327 0.83 -0.7
3,503,133 + -1.8
3,503,133 - +0.1
3,503,218 + +0.5
3,503,218 + +0.2
3,503,296 + -0.1
3,503,318 + +0.3
3,503,333 + -0.5
3,503,346 - +0.3
3,503,375 - -0.5
3,503,391 - -0.3
3,503,391 - -0.8
3,503,391 - -1.1
3,503,393 - +0.3
3,503,393 - -1.5
3,503,480 - -1.8
3,503,526 - +0.1
3,503,587 - +0.4
3,503,597 + -0.4
3,503,600 - -0.5
3,503,661 - -0.1
3,503,700 + -2.3
3,503,700 + -0.0
3,503,700 + +0.7
3,503,703 - -0.2
3,503,708 - -1.0
3,503,708 - +0.2
3,503,708 - -1.4

Or see this region's nucleotide sequence