Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1538

Experiment: Pyruvate-Sulfite (60-20mM) with Chromate 50uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmltC and DVU1537 are separated by 129 nucleotidesDVU1537 and DVU1538 are separated by 263 nucleotidesDVU1538 and glpX are separated by 102 nucleotides DVU1536: mltC - transglycosylase, SLT family (TIGR), at 1,603,093 to 1,604,229 mltC DVU1537: DVU1537 - lipoprotein, putative (TIGR), at 1,604,359 to 1,604,925 DVU1537 DVU1538: DVU1538 - hypothetical protein (TIGR), at 1,605,189 to 1,605,713 DVU1538 DVU1539: glpX - fructose-1,6-bisphosphatase, class II (TIGR), at 1,605,816 to 1,606,799 glpX Position (kb) 1605 1606Strain fitness (log2 ratio) -2 -1 0 1 2at 1604.347 kb on - strandat 1604.361 kb on + strandat 1604.374 kb on - strandat 1604.488 kb on + strand, within DVU1537at 1604.607 kb on + strand, within DVU1537at 1604.660 kb on - strand, within DVU1537at 1604.684 kb on - strand, within DVU1537at 1604.690 kb on - strand, within DVU1537at 1604.750 kb on + strand, within DVU1537at 1604.813 kb on + strand, within DVU1537at 1604.912 kb on + strandat 1605.008 kb on + strandat 1605.008 kb on + strandat 1605.016 kb on - strandat 1605.016 kb on - strandat 1605.131 kb on - strandat 1605.226 kb on + strandat 1605.230 kb on + strandat 1605.297 kb on - strand, within DVU1538at 1605.299 kb on - strand, within DVU1538at 1605.336 kb on + strand, within DVU1538at 1605.406 kb on - strand, within DVU1538at 1605.515 kb on - strand, within DVU1538at 1605.877 kb on - strandat 1605.877 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Sulfite (60-20mM) with Chromate 50uM
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1,604,347 - -1.3
1,604,361 + -0.6
1,604,374 - +0.3
1,604,488 + DVU1537 0.23 +0.8
1,604,607 + DVU1537 0.44 -0.1
1,604,660 - DVU1537 0.53 -1.5
1,604,684 - DVU1537 0.57 -0.7
1,604,690 - DVU1537 0.58 -0.9
1,604,750 + DVU1537 0.69 -0.6
1,604,813 + DVU1537 0.80 -0.2
1,604,912 + -1.2
1,605,008 + +1.0
1,605,008 + +2.4
1,605,016 - +0.4
1,605,016 - +0.8
1,605,131 - -0.5
1,605,226 + -1.3
1,605,230 + -0.9
1,605,297 - DVU1538 0.21 -0.3
1,605,299 - DVU1538 0.21 -0.5
1,605,336 + DVU1538 0.28 -0.4
1,605,406 - DVU1538 0.41 -1.1
1,605,515 - DVU1538 0.62 -2.6
1,605,877 - -0.3
1,605,877 - -1.9

Or see this region's nucleotide sequence