Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0571 and Synpcc7942_0572 overlap by 4 nucleotides Synpcc7942_0572 and tRNA-Gly are separated by 83 nucleotides tRNA-Gly and Synpcc7942_0573 are separated by 8 nucleotides Synpcc7942_0573 and Synpcc7942_0574 are separated by 78 nucleotides
Synpcc7942_0571: Synpcc7942_0571 - sugar (Glycoside-Pentoside-Hexuronide) transporter, at 553,324 to 554,697
_0571
Synpcc7942_0572: Synpcc7942_0572 - hypothetical protein, at 554,694 to 555,134
_0572
Synpcc7942_R0032: tRNA-Gly - tRNA-Gly, at 555,218 to 555,288
tRNA-Gly
Synpcc7942_0573: Synpcc7942_0573 - hypothetical protein, at 555,297 to 555,533
_0573
Synpcc7942_0574: Synpcc7942_0574 - hypothetical protein, at 555,612 to 556,442
_0574
Position (kb) 555
556 Strain fitness (log2 ratio) -2
-1
0
1
2 at 554.536 kb on - strand, within Synpcc7942_0571 at 554.693 kb on + strand at 554.713 kb on + strand at 554.721 kb on - strand at 554.796 kb on + strand, within Synpcc7942_0572 at 554.853 kb on - strand, within Synpcc7942_0572 at 554.895 kb on - strand, within Synpcc7942_0572 at 554.928 kb on + strand, within Synpcc7942_0572 at 554.974 kb on + strand at 555.051 kb on - strand, within Synpcc7942_0572 at 555.071 kb on - strand, within Synpcc7942_0572 at 555.086 kb on - strand, within Synpcc7942_0572 at 555.088 kb on + strand, within Synpcc7942_0572 at 555.098 kb on - strand at 555.119 kb on - strand at 555.139 kb on - strand at 555.155 kb on + strand at 555.157 kb on + strand at 555.157 kb on + strand at 555.157 kb on + strand at 555.160 kb on - strand at 555.165 kb on - strand at 555.165 kb on - strand at 555.165 kb on - strand at 555.176 kb on + strand at 555.182 kb on - strand at 555.182 kb on - strand at 555.294 kb on + strand at 555.302 kb on + strand at 555.314 kb on + strand at 555.345 kb on + strand, within Synpcc7942_0573 at 555.413 kb on + strand, within Synpcc7942_0573 at 555.419 kb on - strand, within Synpcc7942_0573 at 555.477 kb on + strand, within Synpcc7942_0573 at 555.491 kb on - strand, within Synpcc7942_0573 at 555.510 kb on - strand at 555.518 kb on + strand at 555.553 kb on + strand at 555.558 kb on + strand at 555.602 kb on - strand at 555.633 kb on - strand at 555.648 kb on + strand at 555.664 kb on + strand at 555.664 kb on + strand at 555.664 kb on + strand at 555.677 kb on + strand at 555.681 kb on - strand at 555.696 kb on - strand, within Synpcc7942_0574 at 555.721 kb on - strand, within Synpcc7942_0574 at 555.733 kb on + strand, within Synpcc7942_0574 at 555.749 kb on + strand, within Synpcc7942_0574 at 555.820 kb on + strand, within Synpcc7942_0574 at 555.825 kb on + strand, within Synpcc7942_0574 at 555.895 kb on - strand, within Synpcc7942_0574 at 555.897 kb on + strand, within Synpcc7942_0574 at 555.897 kb on + strand, within Synpcc7942_0574 at 555.897 kb on + strand, within Synpcc7942_0574 at 555.897 kb on + strand, within Synpcc7942_0574 at 555.897 kb on + strand, within Synpcc7942_0574 at 555.905 kb on - strand, within Synpcc7942_0574 at 555.913 kb on + strand, within Synpcc7942_0574 at 555.915 kb on + strand, within Synpcc7942_0574 at 555.921 kb on - strand, within Synpcc7942_0574 at 555.921 kb on - strand, within Synpcc7942_0574 at 555.921 kb on - strand, within Synpcc7942_0574 at 555.921 kb on - strand, within Synpcc7942_0574 at 555.987 kb on + strand, within Synpcc7942_0574 at 555.987 kb on + strand, within Synpcc7942_0574 at 555.997 kb on + strand, within Synpcc7942_0574 at 555.998 kb on - strand, within Synpcc7942_0574 at 556.005 kb on - strand, within Synpcc7942_0574 at 556.018 kb on - strand, within Synpcc7942_0574 at 556.023 kb on - strand, within Synpcc7942_0574 at 556.027 kb on + strand, within Synpcc7942_0574 at 556.037 kb on - strand, within Synpcc7942_0574 at 556.037 kb on - strand, within Synpcc7942_0574 at 556.037 kb on - strand, within Synpcc7942_0574 at 556.149 kb on + strand, within Synpcc7942_0574 at 556.153 kb on - strand, within Synpcc7942_0574 at 556.162 kb on - strand, within Synpcc7942_0574 at 556.162 kb on - strand, within Synpcc7942_0574 at 556.181 kb on - strand, within Synpcc7942_0574 at 556.233 kb on + strand, within Synpcc7942_0574 at 556.241 kb on - strand, within Synpcc7942_0574 at 556.253 kb on - strand, within Synpcc7942_0574 at 556.257 kb on + strand, within Synpcc7942_0574 at 556.286 kb on - strand, within Synpcc7942_0574
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 554,536 - Synpcc7942_0571 0.88 +1.7 554,693 + -1.4 554,713 + +2.6 554,721 - +0.0 554,796 + Synpcc7942_0572 0.23 +0.5 554,853 - Synpcc7942_0572 0.36 +0.5 554,895 - Synpcc7942_0572 0.46 -2.0 554,928 + Synpcc7942_0572 0.53 +0.3 554,974 + +1.2 555,051 - Synpcc7942_0572 0.81 +2.0 555,071 - Synpcc7942_0572 0.85 -0.9 555,086 - Synpcc7942_0572 0.89 -0.4 555,088 + Synpcc7942_0572 0.89 -0.4 555,098 - +0.7 555,119 - -0.2 555,139 - -1.4 555,155 + -1.9 555,157 + +2.1 555,157 + -1.2 555,157 + +0.8 555,160 - -1.1 555,165 - -0.6 555,165 - -0.8 555,165 - +2.1 555,176 + -2.5 555,182 - +0.0 555,182 - -0.9 555,294 + +0.8 555,302 + -1.1 555,314 + -0.4 555,345 + Synpcc7942_0573 0.20 -1.4 555,413 + Synpcc7942_0573 0.49 -1.4 555,419 - Synpcc7942_0573 0.51 -1.2 555,477 + Synpcc7942_0573 0.76 -1.0 555,491 - Synpcc7942_0573 0.82 -0.5 555,510 - -0.3 555,518 + +0.6 555,553 + +0.1 555,558 + +0.3 555,602 - -0.2 555,633 - +2.0 555,648 + -1.2 555,664 + +0.1 555,664 + -0.6 555,664 + -1.5 555,677 + +0.3 555,681 - +1.2 555,696 - Synpcc7942_0574 0.10 -2.1 555,721 - Synpcc7942_0574 0.13 -0.5 555,733 + Synpcc7942_0574 0.15 +2.2 555,749 + Synpcc7942_0574 0.16 -0.6 555,820 + Synpcc7942_0574 0.25 +1.9 555,825 + Synpcc7942_0574 0.26 +0.4 555,895 - Synpcc7942_0574 0.34 +1.7 555,897 + Synpcc7942_0574 0.34 -1.3 555,897 + Synpcc7942_0574 0.34 +1.5 555,897 + Synpcc7942_0574 0.34 -1.2 555,897 + Synpcc7942_0574 0.34 +0.1 555,897 + Synpcc7942_0574 0.34 -0.2 555,905 - Synpcc7942_0574 0.35 +0.8 555,913 + Synpcc7942_0574 0.36 +0.3 555,915 + Synpcc7942_0574 0.36 -1.8 555,921 - Synpcc7942_0574 0.37 -2.1 555,921 - Synpcc7942_0574 0.37 -0.5 555,921 - Synpcc7942_0574 0.37 -1.3 555,921 - Synpcc7942_0574 0.37 -0.6 555,987 + Synpcc7942_0574 0.45 -0.7 555,987 + Synpcc7942_0574 0.45 -2.2 555,997 + Synpcc7942_0574 0.46 +1.2 555,998 - Synpcc7942_0574 0.46 +0.1 556,005 - Synpcc7942_0574 0.47 -0.7 556,018 - Synpcc7942_0574 0.49 +1.8 556,023 - Synpcc7942_0574 0.49 +1.3 556,027 + Synpcc7942_0574 0.50 -0.1 556,037 - Synpcc7942_0574 0.51 -1.5 556,037 - Synpcc7942_0574 0.51 +1.4 556,037 - Synpcc7942_0574 0.51 -0.3 556,149 + Synpcc7942_0574 0.65 +1.0 556,153 - Synpcc7942_0574 0.65 -1.4 556,162 - Synpcc7942_0574 0.66 +1.6 556,162 - Synpcc7942_0574 0.66 +0.5 556,181 - Synpcc7942_0574 0.68 -0.2 556,233 + Synpcc7942_0574 0.75 -0.5 556,241 - Synpcc7942_0574 0.76 +0.5 556,253 - Synpcc7942_0574 0.77 -1.3 556,257 + Synpcc7942_0574 0.78 +0.2 556,286 - Synpcc7942_0574 0.81 +1.8
Or see this region's nucleotide sequence