Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2401

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_2400 and hspA are separated by 132 nucleotideshspA and Synpcc7942_2402 are separated by 84 nucleotides Synpcc7942_2400: Synpcc7942_2400 - hypothetical protein, at 2,474,159 to 2,475,316 _2400 Synpcc7942_2401: hspA - heat shock protein Hsp20, at 2,475,449 to 2,475,940 hspA Synpcc7942_2402: Synpcc7942_2402 - hypothetical protein, at 2,476,025 to 2,477,155 _2402 Position (kb) 2475 2476Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2475.256 kb on + strandat 2475.302 kb on + strandat 2475.323 kb on + strandat 2475.323 kb on + strandat 2475.323 kb on + strandat 2475.326 kb on - strandat 2475.331 kb on - strandat 2475.331 kb on - strandat 2475.331 kb on - strandat 2475.331 kb on - strandat 2475.331 kb on - strandat 2475.337 kb on + strandat 2475.352 kb on + strandat 2475.352 kb on + strandat 2475.352 kb on + strandat 2475.362 kb on + strandat 2475.394 kb on - strandat 2475.400 kb on + strandat 2475.408 kb on + strandat 2475.408 kb on - strandat 2475.416 kb on - strandat 2475.463 kb on + strandat 2475.491 kb on - strandat 2475.518 kb on + strand, within hspAat 2475.521 kb on - strand, within hspAat 2475.536 kb on + strand, within hspAat 2475.553 kb on + strand, within hspAat 2475.566 kb on - strandat 2475.583 kb on - strand, within hspAat 2475.599 kb on - strand, within hspAat 2475.630 kb on - strand, within hspAat 2475.650 kb on + strand, within hspAat 2475.651 kb on - strand, within hspAat 2475.658 kb on - strand, within hspAat 2475.666 kb on + strand, within hspAat 2475.667 kb on - strand, within hspAat 2475.668 kb on - strandat 2475.671 kb on + strand, within hspAat 2475.675 kb on - strand, within hspAat 2475.676 kb on + strand, within hspAat 2475.684 kb on - strand, within hspAat 2475.684 kb on - strand, within hspAat 2475.697 kb on - strand, within hspAat 2475.753 kb on - strand, within hspAat 2475.792 kb on + strand, within hspAat 2475.840 kb on - strand, within hspAat 2475.843 kb on + strand, within hspAat 2475.843 kb on + strand, within hspAat 2475.849 kb on + strandat 2475.851 kb on - strand, within hspAat 2475.856 kb on + strand, within hspAat 2475.856 kb on + strand, within hspAat 2475.856 kb on + strand, within hspAat 2475.857 kb on - strand, within hspAat 2475.862 kb on - strand, within hspAat 2475.864 kb on - strand, within hspAat 2475.864 kb on - strand, within hspAat 2475.918 kb on + strandat 2475.947 kb on - strandat 2475.951 kb on + strandat 2475.951 kb on + strandat 2475.959 kb on - strandat 2475.959 kb on - strandat 2475.959 kb on - strandat 2475.963 kb on + strandat 2475.963 kb on + strandat 2475.963 kb on + strandat 2475.963 kb on + strandat 2475.963 kb on + strandat 2475.963 kb on + strandat 2475.963 kb on + strandat 2475.963 kb on + strandat 2475.963 kb on + strandat 2475.963 kb on + strandat 2475.971 kb on - strandat 2475.971 kb on - strandat 2475.971 kb on - strandat 2475.971 kb on - strandat 2475.971 kb on - strandat 2475.971 kb on - strandat 2475.971 kb on - strandat 2475.996 kb on + strandat 2476.006 kb on + strandat 2476.045 kb on + strandat 2476.099 kb on - strandat 2476.135 kb on + strandat 2476.143 kb on - strand, within Synpcc7942_2402at 2476.244 kb on - strand, within Synpcc7942_2402at 2476.263 kb on + strand, within Synpcc7942_2402at 2476.271 kb on - strand, within Synpcc7942_2402at 2476.361 kb on - strand, within Synpcc7942_2402at 2476.376 kb on + strand, within Synpcc7942_2402at 2476.421 kb on - strand, within Synpcc7942_2402at 2476.465 kb on - strand, within Synpcc7942_2402at 2476.767 kb on - strand, within Synpcc7942_2402at 2476.852 kb on + strand, within Synpcc7942_2402at 2476.860 kb on - strand, within Synpcc7942_2402at 2476.906 kb on - strand, within Synpcc7942_2402

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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2,475,256 + -1.2
2,475,302 + +1.2
2,475,323 + -1.0
2,475,323 + +0.7
2,475,323 + +1.9
2,475,326 - +0.7
2,475,331 - -1.0
2,475,331 - -0.6
2,475,331 - -0.2
2,475,331 - -1.3
2,475,331 - -3.1
2,475,337 + -0.3
2,475,352 + +0.5
2,475,352 + -0.1
2,475,352 + -1.0
2,475,362 + -0.3
2,475,394 - -2.3
2,475,400 + -0.2
2,475,408 + -0.5
2,475,408 - -0.8
2,475,416 - +0.3
2,475,463 + +1.1
2,475,491 - +0.2
2,475,518 + hspA Synpcc7942_2401 0.14 -0.9
2,475,521 - hspA Synpcc7942_2401 0.15 +2.2
2,475,536 + hspA Synpcc7942_2401 0.18 +1.2
2,475,553 + hspA Synpcc7942_2401 0.21 -1.6
2,475,566 - +2.2
2,475,583 - hspA Synpcc7942_2401 0.27 +1.5
2,475,599 - hspA Synpcc7942_2401 0.30 -0.3
2,475,630 - hspA Synpcc7942_2401 0.37 +0.3
2,475,650 + hspA Synpcc7942_2401 0.41 +1.4
2,475,651 - hspA Synpcc7942_2401 0.41 +1.8
2,475,658 - hspA Synpcc7942_2401 0.42 +2.1
2,475,666 + hspA Synpcc7942_2401 0.44 -0.3
2,475,667 - hspA Synpcc7942_2401 0.44 -1.2
2,475,668 - +2.5
2,475,671 + hspA Synpcc7942_2401 0.45 -0.3
2,475,675 - hspA Synpcc7942_2401 0.46 -0.9
2,475,676 + hspA Synpcc7942_2401 0.46 -0.1
2,475,684 - hspA Synpcc7942_2401 0.48 -0.7
2,475,684 - hspA Synpcc7942_2401 0.48 -1.0
2,475,697 - hspA Synpcc7942_2401 0.50 -0.3
2,475,753 - hspA Synpcc7942_2401 0.62 -1.4
2,475,792 + hspA Synpcc7942_2401 0.70 -0.4
2,475,840 - hspA Synpcc7942_2401 0.79 -1.9
2,475,843 + hspA Synpcc7942_2401 0.80 +0.0
2,475,843 + hspA Synpcc7942_2401 0.80 +1.6
2,475,849 + +2.1
2,475,851 - hspA Synpcc7942_2401 0.82 +0.1
2,475,856 + hspA Synpcc7942_2401 0.83 -0.5
2,475,856 + hspA Synpcc7942_2401 0.83 -0.2
2,475,856 + hspA Synpcc7942_2401 0.83 +1.3
2,475,857 - hspA Synpcc7942_2401 0.83 +0.7
2,475,862 - hspA Synpcc7942_2401 0.84 -1.7
2,475,864 - hspA Synpcc7942_2401 0.84 -2.0
2,475,864 - hspA Synpcc7942_2401 0.84 -1.7
2,475,918 + -1.5
2,475,947 - -1.2
2,475,951 + +0.7
2,475,951 + +1.1
2,475,959 - -1.9
2,475,959 - -0.1
2,475,959 - -1.0
2,475,963 + -0.4
2,475,963 + -0.3
2,475,963 + +0.3
2,475,963 + -2.4
2,475,963 + -0.2
2,475,963 + -1.2
2,475,963 + +1.8
2,475,963 + +1.3
2,475,963 + -1.6
2,475,963 + -1.7
2,475,971 - -0.8
2,475,971 - +1.9
2,475,971 - +0.4
2,475,971 - -1.0
2,475,971 - -0.3
2,475,971 - +0.4
2,475,971 - +0.9
2,475,996 + +0.3
2,476,006 + +2.0
2,476,045 + -1.6
2,476,099 - -2.9
2,476,135 + -0.7
2,476,143 - Synpcc7942_2402 0.10 +0.4
2,476,244 - Synpcc7942_2402 0.19 -0.7
2,476,263 + Synpcc7942_2402 0.21 -0.8
2,476,271 - Synpcc7942_2402 0.22 -1.5
2,476,361 - Synpcc7942_2402 0.30 -1.0
2,476,376 + Synpcc7942_2402 0.31 -1.5
2,476,421 - Synpcc7942_2402 0.35 -1.4
2,476,465 - Synpcc7942_2402 0.39 -0.9
2,476,767 - Synpcc7942_2402 0.66 -1.6
2,476,852 + Synpcc7942_2402 0.73 -1.6
2,476,860 - Synpcc7942_2402 0.74 -0.5
2,476,906 - Synpcc7942_2402 0.78 -1.5

Or see this region's nucleotide sequence