Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt coaD and Synpcc7942_2008 are separated by 89 nucleotides Synpcc7942_2008 and Synpcc7942_2009 are separated by 11 nucleotides Synpcc7942_2009 and psbV are separated by 359 nucleotides
Synpcc7942_2007: coaD - phosphopantetheine adenylyltransferase, at 2,075,281 to 2,075,781
coaD
Synpcc7942_2008: Synpcc7942_2008 - hypothetical protein, at 2,075,871 to 2,076,353
_2008
Synpcc7942_2009: Synpcc7942_2009 - hypothetical protein, at 2,076,365 to 2,079,133
_2009
Synpcc7942_2010: psbV - cytochrome c550, at 2,079,493 to 2,080,140
psbV
Position (kb)
2076
2077
2078
2079
2080 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2075.800 kb on + strand at 2075.820 kb on - strand at 2075.838 kb on + strand at 2075.839 kb on + strand at 2075.839 kb on + strand at 2075.839 kb on + strand at 2075.846 kb on + strand at 2075.846 kb on - strand at 2075.847 kb on - strand at 2075.875 kb on - strand at 2075.920 kb on + strand, within Synpcc7942_2008 at 2075.920 kb on + strand, within Synpcc7942_2008 at 2075.920 kb on + strand, within Synpcc7942_2008 at 2075.920 kb on + strand, within Synpcc7942_2008 at 2075.920 kb on + strand, within Synpcc7942_2008 at 2075.920 kb on + strand, within Synpcc7942_2008 at 2075.920 kb on + strand, within Synpcc7942_2008 at 2075.922 kb on + strand, within Synpcc7942_2008 at 2075.928 kb on - strand, within Synpcc7942_2008 at 2075.928 kb on - strand, within Synpcc7942_2008 at 2075.928 kb on - strand, within Synpcc7942_2008 at 2075.928 kb on - strand, within Synpcc7942_2008 at 2075.928 kb on - strand, within Synpcc7942_2008 at 2075.951 kb on + strand, within Synpcc7942_2008 at 2075.954 kb on + strand, within Synpcc7942_2008 at 2075.962 kb on - strand, within Synpcc7942_2008 at 2075.967 kb on + strand, within Synpcc7942_2008 at 2075.970 kb on - strand, within Synpcc7942_2008 at 2075.979 kb on + strand, within Synpcc7942_2008 at 2076.009 kb on + strand, within Synpcc7942_2008 at 2076.011 kb on - strand, within Synpcc7942_2008 at 2076.040 kb on + strand, within Synpcc7942_2008 at 2076.050 kb on + strand, within Synpcc7942_2008 at 2076.050 kb on + strand, within Synpcc7942_2008 at 2076.053 kb on - strand, within Synpcc7942_2008 at 2076.082 kb on + strand, within Synpcc7942_2008 at 2076.101 kb on + strand, within Synpcc7942_2008 at 2076.167 kb on - strand, within Synpcc7942_2008 at 2076.170 kb on + strand, within Synpcc7942_2008 at 2076.196 kb on + strand, within Synpcc7942_2008 at 2076.207 kb on + strand at 2076.207 kb on + strand, within Synpcc7942_2008 at 2076.215 kb on - strand, within Synpcc7942_2008 at 2076.220 kb on - strand, within Synpcc7942_2008 at 2076.226 kb on + strand, within Synpcc7942_2008 at 2076.227 kb on - strand, within Synpcc7942_2008 at 2076.236 kb on + strand, within Synpcc7942_2008 at 2076.249 kb on - strand, within Synpcc7942_2008 at 2076.264 kb on + strand, within Synpcc7942_2008 at 2076.264 kb on + strand, within Synpcc7942_2008 at 2076.291 kb on + strand, within Synpcc7942_2008 at 2076.299 kb on - strand, within Synpcc7942_2008 at 2076.357 kb on - strand at 2076.373 kb on - strand at 2076.384 kb on + strand at 2076.444 kb on - strand at 2076.503 kb on + strand at 2076.503 kb on + strand at 2076.511 kb on - strand at 2076.511 kb on - strand at 2076.556 kb on + strand at 2076.556 kb on + strand at 2076.557 kb on + strand at 2076.558 kb on + strand at 2076.573 kb on + strand at 2076.579 kb on + strand at 2076.581 kb on - strand at 2076.592 kb on - strand at 2076.606 kb on + strand at 2076.614 kb on + strand at 2076.617 kb on - strand at 2076.622 kb on - strand at 2076.627 kb on + strand at 2076.627 kb on - strand at 2076.663 kb on + strand, within Synpcc7942_2009 at 2076.731 kb on + strand, within Synpcc7942_2009 at 2076.749 kb on + strand, within Synpcc7942_2009 at 2076.749 kb on + strand, within Synpcc7942_2009 at 2076.757 kb on - strand, within Synpcc7942_2009 at 2076.786 kb on + strand, within Synpcc7942_2009 at 2076.846 kb on + strand, within Synpcc7942_2009 at 2076.872 kb on - strand, within Synpcc7942_2009 at 2076.902 kb on + strand, within Synpcc7942_2009 at 2076.903 kb on + strand, within Synpcc7942_2009 at 2076.903 kb on + strand, within Synpcc7942_2009 at 2076.910 kb on + strand, within Synpcc7942_2009 at 2076.918 kb on - strand, within Synpcc7942_2009 at 2076.918 kb on - strand, within Synpcc7942_2009 at 2076.931 kb on - strand, within Synpcc7942_2009 at 2076.951 kb on + strand, within Synpcc7942_2009 at 2076.969 kb on - strand, within Synpcc7942_2009 at 2076.970 kb on + strand, within Synpcc7942_2009 at 2076.987 kb on + strand, within Synpcc7942_2009 at 2076.987 kb on + strand, within Synpcc7942_2009 at 2077.020 kb on + strand, within Synpcc7942_2009 at 2077.020 kb on + strand, within Synpcc7942_2009 at 2077.020 kb on + strand, within Synpcc7942_2009 at 2077.020 kb on + strand, within Synpcc7942_2009 at 2077.028 kb on - strand, within Synpcc7942_2009 at 2077.046 kb on + strand, within Synpcc7942_2009 at 2077.123 kb on + strand, within Synpcc7942_2009 at 2077.134 kb on + strand, within Synpcc7942_2009 at 2077.152 kb on - strand, within Synpcc7942_2009 at 2077.172 kb on - strand, within Synpcc7942_2009 at 2077.192 kb on - strand, within Synpcc7942_2009 at 2077.192 kb on - strand, within Synpcc7942_2009 at 2077.192 kb on - strand, within Synpcc7942_2009 at 2077.287 kb on - strand, within Synpcc7942_2009 at 2077.321 kb on - strand, within Synpcc7942_2009 at 2077.335 kb on + strand, within Synpcc7942_2009 at 2077.338 kb on - strand, within Synpcc7942_2009 at 2077.387 kb on + strand, within Synpcc7942_2009 at 2077.457 kb on + strand, within Synpcc7942_2009 at 2077.480 kb on - strand, within Synpcc7942_2009 at 2077.512 kb on + strand, within Synpcc7942_2009 at 2077.546 kb on + strand, within Synpcc7942_2009 at 2077.565 kb on + strand, within Synpcc7942_2009 at 2077.596 kb on + strand, within Synpcc7942_2009 at 2077.605 kb on + strand, within Synpcc7942_2009 at 2077.608 kb on + strand, within Synpcc7942_2009 at 2077.610 kb on + strand, within Synpcc7942_2009 at 2077.611 kb on + strand, within Synpcc7942_2009 at 2077.613 kb on - strand, within Synpcc7942_2009 at 2077.616 kb on - strand, within Synpcc7942_2009 at 2077.616 kb on - strand, within Synpcc7942_2009 at 2077.675 kb on - strand, within Synpcc7942_2009 at 2077.675 kb on - strand, within Synpcc7942_2009 at 2077.675 kb on - strand, within Synpcc7942_2009 at 2077.690 kb on + strand, within Synpcc7942_2009 at 2077.698 kb on - strand, within Synpcc7942_2009 at 2077.737 kb on - strand, within Synpcc7942_2009 at 2077.737 kb on - strand, within Synpcc7942_2009 at 2077.767 kb on - strand, within Synpcc7942_2009 at 2077.775 kb on - strand, within Synpcc7942_2009 at 2077.798 kb on - strand, within Synpcc7942_2009 at 2077.800 kb on - strand, within Synpcc7942_2009 at 2077.800 kb on - strand, within Synpcc7942_2009 at 2077.800 kb on - strand, within Synpcc7942_2009 at 2077.808 kb on - strand, within Synpcc7942_2009 at 2077.808 kb on - strand, within Synpcc7942_2009 at 2077.832 kb on - strand, within Synpcc7942_2009 at 2077.837 kb on - strand, within Synpcc7942_2009 at 2077.857 kb on + strand, within Synpcc7942_2009 at 2077.858 kb on - strand, within Synpcc7942_2009 at 2077.865 kb on - strand, within Synpcc7942_2009 at 2077.902 kb on - strand, within Synpcc7942_2009 at 2077.909 kb on + strand, within Synpcc7942_2009 at 2077.970 kb on + strand, within Synpcc7942_2009 at 2077.973 kb on - strand, within Synpcc7942_2009 at 2078.200 kb on - strand, within Synpcc7942_2009 at 2078.209 kb on + strand, within Synpcc7942_2009 at 2078.258 kb on + strand, within Synpcc7942_2009 at 2078.263 kb on + strand, within Synpcc7942_2009 at 2078.271 kb on - strand, within Synpcc7942_2009 at 2078.284 kb on + strand, within Synpcc7942_2009 at 2078.327 kb on + strand, within Synpcc7942_2009 at 2078.354 kb on - strand, within Synpcc7942_2009 at 2078.367 kb on + strand, within Synpcc7942_2009 at 2078.369 kb on + strand, within Synpcc7942_2009 at 2078.408 kb on - strand, within Synpcc7942_2009 at 2078.411 kb on + strand, within Synpcc7942_2009 at 2078.462 kb on - strand, within Synpcc7942_2009 at 2078.484 kb on + strand, within Synpcc7942_2009 at 2078.571 kb on + strand, within Synpcc7942_2009 at 2078.578 kb on + strand, within Synpcc7942_2009 at 2078.591 kb on - strand, within Synpcc7942_2009 at 2078.660 kb on + strand, within Synpcc7942_2009 at 2078.677 kb on + strand, within Synpcc7942_2009 at 2078.733 kb on + strand, within Synpcc7942_2009 at 2078.738 kb on + strand, within Synpcc7942_2009 at 2078.746 kb on - strand, within Synpcc7942_2009 at 2078.793 kb on - strand, within Synpcc7942_2009 at 2078.819 kb on + strand, within Synpcc7942_2009 at 2078.819 kb on + strand, within Synpcc7942_2009 at 2078.819 kb on + strand, within Synpcc7942_2009 at 2078.829 kb on + strand, within Synpcc7942_2009 at 2078.829 kb on + strand, within Synpcc7942_2009 at 2078.878 kb on + strand at 2078.879 kb on + strand at 2078.888 kb on - strand at 2078.895 kb on - strand at 2078.910 kb on + strand at 2078.913 kb on - strand at 2078.918 kb on - strand at 2078.918 kb on - strand at 2079.046 kb on - strand at 2079.046 kb on - strand at 2079.046 kb on - strand at 2079.069 kb on + strand at 2079.081 kb on + strand at 2079.140 kb on + strand at 2079.148 kb on - strand at 2079.182 kb on - strand at 2079.242 kb on + strand at 2079.258 kb on - strand at 2079.304 kb on + strand at 2079.305 kb on + strand at 2079.333 kb on + strand at 2079.341 kb on - strand at 2079.356 kb on - strand at 2079.356 kb on - strand at 2079.379 kb on - strand at 2079.416 kb on + strand at 2079.469 kb on + strand at 2079.491 kb on + strand at 2079.505 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 2,075,800 + +0.1 2,075,820 - -0.7 2,075,838 + -2.5 2,075,839 + +1.4 2,075,839 + -0.4 2,075,839 + +0.1 2,075,846 + -0.4 2,075,846 - -0.4 2,075,847 - +1.3 2,075,875 - -1.9 2,075,920 + Synpcc7942_2008 0.10 -1.9 2,075,920 + Synpcc7942_2008 0.10 -0.3 2,075,920 + Synpcc7942_2008 0.10 -0.2 2,075,920 + Synpcc7942_2008 0.10 +1.1 2,075,920 + Synpcc7942_2008 0.10 -0.8 2,075,920 + Synpcc7942_2008 0.10 +1.5 2,075,920 + Synpcc7942_2008 0.10 +2.5 2,075,922 + Synpcc7942_2008 0.11 -0.4 2,075,928 - Synpcc7942_2008 0.12 -1.7 2,075,928 - Synpcc7942_2008 0.12 -1.0 2,075,928 - Synpcc7942_2008 0.12 -1.7 2,075,928 - Synpcc7942_2008 0.12 +1.0 2,075,928 - Synpcc7942_2008 0.12 +0.1 2,075,951 + Synpcc7942_2008 0.17 +1.7 2,075,954 + Synpcc7942_2008 0.17 -0.7 2,075,962 - Synpcc7942_2008 0.19 +0.4 2,075,967 + Synpcc7942_2008 0.20 -1.4 2,075,970 - Synpcc7942_2008 0.20 -0.1 2,075,979 + Synpcc7942_2008 0.22 -0.1 2,076,009 + Synpcc7942_2008 0.29 -0.9 2,076,011 - Synpcc7942_2008 0.29 +1.1 2,076,040 + Synpcc7942_2008 0.35 +2.1 2,076,050 + Synpcc7942_2008 0.37 +1.2 2,076,050 + Synpcc7942_2008 0.37 +0.3 2,076,053 - Synpcc7942_2008 0.38 -1.0 2,076,082 + Synpcc7942_2008 0.44 -0.9 2,076,101 + Synpcc7942_2008 0.48 +2.0 2,076,167 - Synpcc7942_2008 0.61 +1.9 2,076,170 + Synpcc7942_2008 0.62 -0.6 2,076,196 + Synpcc7942_2008 0.67 +2.1 2,076,207 + +1.0 2,076,207 + Synpcc7942_2008 0.70 +0.8 2,076,215 - Synpcc7942_2008 0.71 +1.0 2,076,220 - Synpcc7942_2008 0.72 -1.1 2,076,226 + Synpcc7942_2008 0.73 +0.5 2,076,227 - Synpcc7942_2008 0.74 -4.2 2,076,236 + Synpcc7942_2008 0.76 +1.6 2,076,249 - Synpcc7942_2008 0.78 -2.3 2,076,264 + Synpcc7942_2008 0.81 -0.2 2,076,264 + Synpcc7942_2008 0.81 -2.1 2,076,291 + Synpcc7942_2008 0.87 -0.7 2,076,299 - Synpcc7942_2008 0.89 -0.6 2,076,357 - -1.4 2,076,373 - -1.9 2,076,384 + -1.2 2,076,444 - -2.3 2,076,503 + -2.1 2,076,503 + -1.4 2,076,511 - -2.0 2,076,511 - -1.9 2,076,556 + -0.8 2,076,556 + +0.8 2,076,557 + -0.9 2,076,558 + -0.6 2,076,573 + -1.1 2,076,579 + -1.3 2,076,581 - -2.3 2,076,592 - -2.9 2,076,606 + -1.7 2,076,614 + -0.9 2,076,617 - -2.8 2,076,622 - -1.2 2,076,627 + -1.8 2,076,627 - -1.5 2,076,663 + Synpcc7942_2009 0.11 -0.9 2,076,731 + Synpcc7942_2009 0.13 -1.2 2,076,749 + Synpcc7942_2009 0.14 -1.4 2,076,749 + Synpcc7942_2009 0.14 -2.7 2,076,757 - Synpcc7942_2009 0.14 -0.7 2,076,786 + Synpcc7942_2009 0.15 -1.5 2,076,846 + Synpcc7942_2009 0.17 -1.2 2,076,872 - Synpcc7942_2009 0.18 -0.6 2,076,902 + Synpcc7942_2009 0.19 -1.7 2,076,903 + Synpcc7942_2009 0.19 -1.9 2,076,903 + Synpcc7942_2009 0.19 -1.3 2,076,910 + Synpcc7942_2009 0.20 -0.4 2,076,918 - Synpcc7942_2009 0.20 +0.8 2,076,918 - Synpcc7942_2009 0.20 -1.6 2,076,931 - Synpcc7942_2009 0.20 -2.5 2,076,951 + Synpcc7942_2009 0.21 -0.3 2,076,969 - Synpcc7942_2009 0.22 +1.5 2,076,970 + Synpcc7942_2009 0.22 -1.7 2,076,987 + Synpcc7942_2009 0.22 -1.2 2,076,987 + Synpcc7942_2009 0.22 -1.1 2,077,020 + Synpcc7942_2009 0.24 -0.8 2,077,020 + Synpcc7942_2009 0.24 -2.2 2,077,020 + Synpcc7942_2009 0.24 -3.6 2,077,020 + Synpcc7942_2009 0.24 -1.7 2,077,028 - Synpcc7942_2009 0.24 -2.2 2,077,046 + Synpcc7942_2009 0.25 -1.7 2,077,123 + Synpcc7942_2009 0.27 -1.2 2,077,134 + Synpcc7942_2009 0.28 +1.6 2,077,152 - Synpcc7942_2009 0.28 -1.7 2,077,172 - Synpcc7942_2009 0.29 -2.8 2,077,192 - Synpcc7942_2009 0.30 -0.7 2,077,192 - Synpcc7942_2009 0.30 -1.6 2,077,192 - Synpcc7942_2009 0.30 -1.5 2,077,287 - Synpcc7942_2009 0.33 -2.2 2,077,321 - Synpcc7942_2009 0.35 -1.0 2,077,335 + Synpcc7942_2009 0.35 -0.3 2,077,338 - Synpcc7942_2009 0.35 -0.0 2,077,387 + Synpcc7942_2009 0.37 -1.9 2,077,457 + Synpcc7942_2009 0.39 -2.1 2,077,480 - Synpcc7942_2009 0.40 -0.6 2,077,512 + Synpcc7942_2009 0.41 -0.9 2,077,546 + Synpcc7942_2009 0.43 -1.1 2,077,565 + Synpcc7942_2009 0.43 -1.1 2,077,596 + Synpcc7942_2009 0.44 -2.7 2,077,605 + Synpcc7942_2009 0.45 -4.0 2,077,608 + Synpcc7942_2009 0.45 -2.2 2,077,610 + Synpcc7942_2009 0.45 -0.1 2,077,611 + Synpcc7942_2009 0.45 -0.1 2,077,613 - Synpcc7942_2009 0.45 -1.2 2,077,616 - Synpcc7942_2009 0.45 -0.1 2,077,616 - Synpcc7942_2009 0.45 -0.9 2,077,675 - Synpcc7942_2009 0.47 -1.1 2,077,675 - Synpcc7942_2009 0.47 -2.2 2,077,675 - Synpcc7942_2009 0.47 -0.9 2,077,690 + Synpcc7942_2009 0.48 -2.6 2,077,698 - Synpcc7942_2009 0.48 -0.9 2,077,737 - Synpcc7942_2009 0.50 -1.9 2,077,737 - Synpcc7942_2009 0.50 -0.6 2,077,767 - Synpcc7942_2009 0.51 +0.2 2,077,775 - Synpcc7942_2009 0.51 -0.2 2,077,798 - Synpcc7942_2009 0.52 -3.8 2,077,800 - Synpcc7942_2009 0.52 -1.7 2,077,800 - Synpcc7942_2009 0.52 -1.9 2,077,800 - Synpcc7942_2009 0.52 -1.1 2,077,808 - Synpcc7942_2009 0.52 -1.9 2,077,808 - Synpcc7942_2009 0.52 -2.2 2,077,832 - Synpcc7942_2009 0.53 -1.6 2,077,837 - Synpcc7942_2009 0.53 -1.3 2,077,857 + Synpcc7942_2009 0.54 -1.9 2,077,858 - Synpcc7942_2009 0.54 -1.0 2,077,865 - Synpcc7942_2009 0.54 -0.9 2,077,902 - Synpcc7942_2009 0.56 -1.9 2,077,909 + Synpcc7942_2009 0.56 -1.8 2,077,970 + Synpcc7942_2009 0.58 -1.1 2,077,973 - Synpcc7942_2009 0.58 -1.3 2,078,200 - Synpcc7942_2009 0.66 -1.4 2,078,209 + Synpcc7942_2009 0.67 -0.3 2,078,258 + Synpcc7942_2009 0.68 -2.4 2,078,263 + Synpcc7942_2009 0.69 -1.7 2,078,271 - Synpcc7942_2009 0.69 -1.0 2,078,284 + Synpcc7942_2009 0.69 -1.3 2,078,327 + Synpcc7942_2009 0.71 -1.5 2,078,354 - Synpcc7942_2009 0.72 -2.0 2,078,367 + Synpcc7942_2009 0.72 +1.3 2,078,369 + Synpcc7942_2009 0.72 -1.6 2,078,408 - Synpcc7942_2009 0.74 -2.6 2,078,411 + Synpcc7942_2009 0.74 -1.7 2,078,462 - Synpcc7942_2009 0.76 -1.4 2,078,484 + Synpcc7942_2009 0.77 -0.4 2,078,571 + Synpcc7942_2009 0.80 -1.6 2,078,578 + Synpcc7942_2009 0.80 -2.4 2,078,591 - Synpcc7942_2009 0.80 -0.2 2,078,660 + Synpcc7942_2009 0.83 -0.7 2,078,677 + Synpcc7942_2009 0.83 -2.4 2,078,733 + Synpcc7942_2009 0.86 -1.9 2,078,738 + Synpcc7942_2009 0.86 -1.3 2,078,746 - Synpcc7942_2009 0.86 +1.6 2,078,793 - Synpcc7942_2009 0.88 -2.1 2,078,819 + Synpcc7942_2009 0.89 -1.6 2,078,819 + Synpcc7942_2009 0.89 -1.3 2,078,819 + Synpcc7942_2009 0.89 -0.9 2,078,829 + Synpcc7942_2009 0.89 +0.1 2,078,829 + Synpcc7942_2009 0.89 -2.8 2,078,878 + -0.1 2,078,879 + -0.2 2,078,888 - -0.7 2,078,895 - -2.9 2,078,910 + -1.7 2,078,913 - +0.7 2,078,918 - -1.9 2,078,918 - -0.2 2,079,046 - -1.1 2,079,046 - -2.7 2,079,046 - -1.6 2,079,069 + -0.9 2,079,081 + +0.8 2,079,140 + +2.3 2,079,148 - -1.7 2,079,182 - -1.1 2,079,242 + -1.1 2,079,258 - +1.1 2,079,304 + +0.3 2,079,305 + -0.5 2,079,333 + +1.6 2,079,341 - +2.5 2,079,356 - +1.0 2,079,356 - +0.1 2,079,379 - -0.8 2,079,416 + +0.4 2,079,469 + +2.5 2,079,491 + -1.1 2,079,505 - +0.7
Or see this region's nucleotide sequence