Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0413

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttrpA and Synpcc7942_0412 are separated by 30 nucleotidesSynpcc7942_0412 and ndhL are separated by 0 nucleotidesndhL and Synpcc7942_0414 are separated by 247 nucleotides Synpcc7942_0411: trpA - tryptophan synthase subunit alpha, at 402,191 to 402,991 trpA Synpcc7942_0412: Synpcc7942_0412 - hypothetical protein, at 403,022 to 403,351 _0412 Synpcc7942_0413: ndhL - hypothetical protein, at 403,352 to 403,768 ndhL Synpcc7942_0414: Synpcc7942_0414 - hypothetical protein, at 404,016 to 405,188 _0414 Position (kb) 403 404Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 403.028 kb on - strandat 403.070 kb on - strand, within Synpcc7942_0412at 403.074 kb on + strand, within Synpcc7942_0412at 403.091 kb on - strand, within Synpcc7942_0412at 403.176 kb on + strand, within Synpcc7942_0412at 403.210 kb on + strand, within Synpcc7942_0412at 403.218 kb on - strand, within Synpcc7942_0412at 403.221 kb on + strand, within Synpcc7942_0412at 403.287 kb on + strand, within Synpcc7942_0412at 403.287 kb on + strand, within Synpcc7942_0412at 403.287 kb on + strand, within Synpcc7942_0412at 403.295 kb on - strand, within Synpcc7942_0412at 403.295 kb on - strand, within Synpcc7942_0412at 403.295 kb on - strand, within Synpcc7942_0412at 403.295 kb on - strand, within Synpcc7942_0412at 403.297 kb on - strand, within Synpcc7942_0412at 403.559 kb on + strand, within ndhLat 403.570 kb on + strand, within ndhLat 403.572 kb on + strand, within ndhLat 403.572 kb on + strand, within ndhLat 403.580 kb on - strand, within ndhLat 403.580 kb on - strand, within ndhLat 403.595 kb on + strand, within ndhLat 403.968 kb on + strandat 403.994 kb on - strandat 404.005 kb on - strandat 404.093 kb on - strandat 404.139 kb on - strand, within Synpcc7942_0414at 404.139 kb on - strand, within Synpcc7942_0414at 404.148 kb on + strand, within Synpcc7942_0414at 404.155 kb on + strand, within Synpcc7942_0414at 404.163 kb on - strand, within Synpcc7942_0414at 404.163 kb on - strand, within Synpcc7942_0414at 404.186 kb on + strand, within Synpcc7942_0414at 404.186 kb on + strand, within Synpcc7942_0414at 404.193 kb on - strand, within Synpcc7942_0414at 404.249 kb on + strand, within Synpcc7942_0414at 404.253 kb on + strand, within Synpcc7942_0414at 404.261 kb on + strand, within Synpcc7942_0414at 404.261 kb on - strand, within Synpcc7942_0414at 404.267 kb on - strand, within Synpcc7942_0414at 404.317 kb on - strand, within Synpcc7942_0414at 404.392 kb on + strand, within Synpcc7942_0414at 404.443 kb on + strand, within Synpcc7942_0414at 404.448 kb on + strand, within Synpcc7942_0414at 404.451 kb on - strand, within Synpcc7942_0414at 404.461 kb on - strand, within Synpcc7942_0414at 404.511 kb on - strand, within Synpcc7942_0414at 404.522 kb on + strand, within Synpcc7942_0414at 404.522 kb on + strand, within Synpcc7942_0414at 404.523 kb on + strand, within Synpcc7942_0414at 404.523 kb on + strand, within Synpcc7942_0414at 404.530 kb on - strand, within Synpcc7942_0414at 404.531 kb on - strand, within Synpcc7942_0414at 404.568 kb on + strand, within Synpcc7942_0414at 404.568 kb on + strand, within Synpcc7942_0414at 404.568 kb on + strand, within Synpcc7942_0414at 404.576 kb on - strand, within Synpcc7942_0414at 404.667 kb on - strand, within Synpcc7942_0414at 404.691 kb on - strand, within Synpcc7942_0414at 404.729 kb on + strand, within Synpcc7942_0414at 404.734 kb on - strand, within Synpcc7942_0414at 404.742 kb on - strand, within Synpcc7942_0414at 404.742 kb on - strand, within Synpcc7942_0414at 404.746 kb on + strand, within Synpcc7942_0414

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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403,028 - +3.1
403,070 - Synpcc7942_0412 0.15 +3.0
403,074 + Synpcc7942_0412 0.16 +0.7
403,091 - Synpcc7942_0412 0.21 +1.2
403,176 + Synpcc7942_0412 0.47 -1.2
403,210 + Synpcc7942_0412 0.57 -1.5
403,218 - Synpcc7942_0412 0.59 -0.9
403,221 + Synpcc7942_0412 0.60 -0.3
403,287 + Synpcc7942_0412 0.80 -0.6
403,287 + Synpcc7942_0412 0.80 -1.2
403,287 + Synpcc7942_0412 0.80 -3.0
403,295 - Synpcc7942_0412 0.83 -1.3
403,295 - Synpcc7942_0412 0.83 -0.2
403,295 - Synpcc7942_0412 0.83 -3.0
403,295 - Synpcc7942_0412 0.83 +0.0
403,297 - Synpcc7942_0412 0.83 -1.1
403,559 + ndhL Synpcc7942_0413 0.50 -1.3
403,570 + ndhL Synpcc7942_0413 0.52 -0.7
403,572 + ndhL Synpcc7942_0413 0.53 +0.9
403,572 + ndhL Synpcc7942_0413 0.53 -1.0
403,580 - ndhL Synpcc7942_0413 0.55 -1.6
403,580 - ndhL Synpcc7942_0413 0.55 -2.2
403,595 + ndhL Synpcc7942_0413 0.58 -1.4
403,968 + +1.9
403,994 - -3.1
404,005 - +0.6
404,093 - -0.2
404,139 - Synpcc7942_0414 0.10 -3.0
404,139 - Synpcc7942_0414 0.10 -1.0
404,148 + Synpcc7942_0414 0.11 -1.2
404,155 + Synpcc7942_0414 0.12 -2.6
404,163 - Synpcc7942_0414 0.13 +1.7
404,163 - Synpcc7942_0414 0.13 -2.7
404,186 + Synpcc7942_0414 0.14 -1.5
404,186 + Synpcc7942_0414 0.14 -2.1
404,193 - Synpcc7942_0414 0.15 -1.5
404,249 + Synpcc7942_0414 0.20 -1.5
404,253 + Synpcc7942_0414 0.20 -1.0
404,261 + Synpcc7942_0414 0.21 -1.6
404,261 - Synpcc7942_0414 0.21 -2.1
404,267 - Synpcc7942_0414 0.21 -0.7
404,317 - Synpcc7942_0414 0.26 -1.6
404,392 + Synpcc7942_0414 0.32 -0.9
404,443 + Synpcc7942_0414 0.36 -0.1
404,448 + Synpcc7942_0414 0.37 -0.0
404,451 - Synpcc7942_0414 0.37 -3.2
404,461 - Synpcc7942_0414 0.38 -1.9
404,511 - Synpcc7942_0414 0.42 +0.7
404,522 + Synpcc7942_0414 0.43 -1.8
404,522 + Synpcc7942_0414 0.43 -1.5
404,523 + Synpcc7942_0414 0.43 -1.9
404,523 + Synpcc7942_0414 0.43 -1.9
404,530 - Synpcc7942_0414 0.44 -2.0
404,531 - Synpcc7942_0414 0.44 -2.3
404,568 + Synpcc7942_0414 0.47 -0.3
404,568 + Synpcc7942_0414 0.47 +0.6
404,568 + Synpcc7942_0414 0.47 -1.5
404,576 - Synpcc7942_0414 0.48 -5.1
404,667 - Synpcc7942_0414 0.55 +0.5
404,691 - Synpcc7942_0414 0.58 -2.0
404,729 + Synpcc7942_0414 0.61 +0.1
404,734 - Synpcc7942_0414 0.61 -0.7
404,742 - Synpcc7942_0414 0.62 -2.6
404,742 - Synpcc7942_0414 0.62 -3.5
404,746 + Synpcc7942_0414 0.62 -0.0

Or see this region's nucleotide sequence