Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0402 and Synpcc7942_0403 are separated by 1 nucleotides Synpcc7942_0403 and prfB are separated by 17 nucleotides
Synpcc7942_0402: Synpcc7942_0402 - hypothetical protein, at 396,872 to 397,396
_0402
Synpcc7942_0403: Synpcc7942_0403 - hypothetical protein, at 397,398 to 397,577
_0403
Synpcc7942_0404: prfB - peptide chain release factor 2, at 397,595 to 398,509
prfB
Position (kb) 396
397
398 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 395.898 kb on + strand at 395.903 kb on + strand at 395.906 kb on - strand at 395.906 kb on - strand at 396.013 kb on + strand at 396.418 kb on + strand at 396.738 kb on + strand at 396.738 kb on + strand at 396.746 kb on - strand at 396.746 kb on - strand at 396.750 kb on + strand at 396.757 kb on - strand at 396.758 kb on + strand at 396.771 kb on + strand at 396.787 kb on + strand at 396.787 kb on + strand at 396.787 kb on + strand at 396.795 kb on - strand at 396.797 kb on + strand at 396.807 kb on + strand at 396.815 kb on - strand at 396.815 kb on - strand at 396.815 kb on - strand at 396.819 kb on + strand at 396.825 kb on + strand at 396.849 kb on + strand at 396.870 kb on + strand at 396.878 kb on - strand at 396.878 kb on - strand at 396.893 kb on - strand at 396.912 kb on - strand at 396.917 kb on + strand at 396.925 kb on - strand, within Synpcc7942_0402 at 397.404 kb on + strand at 397.408 kb on + strand at 397.425 kb on + strand, within Synpcc7942_0403 at 397.439 kb on + strand, within Synpcc7942_0403 at 397.448 kb on - strand, within Synpcc7942_0403 at 397.448 kb on - strand, within Synpcc7942_0403 at 397.483 kb on - strand, within Synpcc7942_0403 at 397.495 kb on - strand, within Synpcc7942_0403 at 397.500 kb on - strand, within Synpcc7942_0403 at 397.508 kb on + strand, within Synpcc7942_0403 at 397.561 kb on + strand at 397.592 kb on + strand at 397.600 kb on - strand at 397.600 kb on - strand at 397.600 kb on - strand at 397.600 kb on - strand at 397.600 kb on - strand at 397.615 kb on + strand at 397.634 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 395,898 + +2.5 395,903 + -1.1 395,906 - -0.2 395,906 - -0.4 396,013 + +0.5 396,418 + -0.8 396,738 + +0.0 396,738 + -1.4 396,746 - +1.0 396,746 - +1.8 396,750 + -0.6 396,757 - -0.1 396,758 + +0.6 396,771 + -0.9 396,787 + -0.2 396,787 + +0.5 396,787 + +2.4 396,795 - -1.1 396,797 + -0.6 396,807 + +0.2 396,815 - -0.1 396,815 - +1.8 396,815 - -0.3 396,819 + -1.0 396,825 + +0.8 396,849 + +3.5 396,870 + +1.3 396,878 - +1.6 396,878 - -0.5 396,893 - +1.7 396,912 - -1.2 396,917 + -1.9 396,925 - Synpcc7942_0402 0.10 -3.2 397,404 + +0.1 397,408 + +0.2 397,425 + Synpcc7942_0403 0.15 -2.7 397,439 + Synpcc7942_0403 0.23 -0.1 397,448 - Synpcc7942_0403 0.28 -0.9 397,448 - Synpcc7942_0403 0.28 -1.5 397,483 - Synpcc7942_0403 0.47 -0.8 397,495 - Synpcc7942_0403 0.54 -0.2 397,500 - Synpcc7942_0403 0.57 -1.2 397,508 + Synpcc7942_0403 0.61 +1.1 397,561 + -0.2 397,592 + -0.3 397,600 - +0.5 397,600 - +2.1 397,600 - -0.9 397,600 - +0.6 397,600 - -0.1 397,615 + +1.1 397,634 - +0.0
Or see this region's nucleotide sequence