Experiment: L-Phenylalanine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0304 and Synpcc7942_0305 are separated by 334 nucleotides Synpcc7942_0305 and chlP overlap by 7 nucleotides chlP and napA are separated by 362 nucleotides
Synpcc7942_0304: Synpcc7942_0304 - hypothetical protein, at 302,833 to 303,480
_0304
Synpcc7942_0305: Synpcc7942_0305 - hypothetical protein, at 303,815 to 304,045
_0305
Synpcc7942_0306: chlP - hypothetical protein, at 304,039 to 304,347
chlP
Synpcc7942_0307: napA - Na+/H+ antiporter, at 304,710 to 305,936
napA
Position (kb) 304
305 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 303.063 kb on + strand at 303.082 kb on - strand, within Synpcc7942_0304 at 303.084 kb on + strand, within Synpcc7942_0304 at 303.084 kb on + strand, within Synpcc7942_0304 at 303.084 kb on + strand at 303.084 kb on + strand, within Synpcc7942_0304 at 303.084 kb on + strand, within Synpcc7942_0304 at 303.084 kb on + strand, within Synpcc7942_0304 at 303.092 kb on - strand, within Synpcc7942_0304 at 303.092 kb on - strand, within Synpcc7942_0304 at 303.114 kb on + strand, within Synpcc7942_0304 at 303.122 kb on - strand, within Synpcc7942_0304 at 303.129 kb on + strand, within Synpcc7942_0304 at 303.137 kb on - strand, within Synpcc7942_0304 at 303.150 kb on + strand, within Synpcc7942_0304 at 303.150 kb on + strand, within Synpcc7942_0304 at 303.165 kb on + strand, within Synpcc7942_0304 at 303.168 kb on - strand, within Synpcc7942_0304 at 303.257 kb on + strand, within Synpcc7942_0304 at 303.283 kb on + strand, within Synpcc7942_0304 at 303.283 kb on + strand, within Synpcc7942_0304 at 303.291 kb on - strand, within Synpcc7942_0304 at 303.291 kb on - strand, within Synpcc7942_0304 at 303.315 kb on + strand, within Synpcc7942_0304 at 303.315 kb on + strand, within Synpcc7942_0304 at 303.315 kb on + strand, within Synpcc7942_0304 at 303.315 kb on + strand, within Synpcc7942_0304 at 303.318 kb on - strand, within Synpcc7942_0304 at 303.323 kb on - strand, within Synpcc7942_0304 at 303.323 kb on - strand, within Synpcc7942_0304 at 303.336 kb on - strand, within Synpcc7942_0304 at 303.341 kb on + strand, within Synpcc7942_0304 at 303.382 kb on - strand, within Synpcc7942_0304 at 303.399 kb on + strand, within Synpcc7942_0304 at 303.414 kb on + strand, within Synpcc7942_0304 at 303.414 kb on + strand, within Synpcc7942_0304 at 303.416 kb on + strand at 303.473 kb on - strand at 303.482 kb on - strand at 303.482 kb on - strand at 303.493 kb on - strand at 303.511 kb on + strand at 303.511 kb on + strand at 303.519 kb on - strand at 303.520 kb on + strand at 303.521 kb on + strand at 303.528 kb on - strand at 303.528 kb on - strand at 303.528 kb on - strand at 303.529 kb on - strand at 303.532 kb on + strand at 303.532 kb on + strand at 303.540 kb on - strand at 303.765 kb on + strand at 303.765 kb on + strand at 303.777 kb on + strand at 303.810 kb on + strand at 303.856 kb on + strand, within Synpcc7942_0305 at 303.856 kb on + strand, within Synpcc7942_0305 at 303.864 kb on - strand, within Synpcc7942_0305 at 303.864 kb on - strand, within Synpcc7942_0305 at 303.883 kb on + strand, within Synpcc7942_0305 at 303.924 kb on - strand, within Synpcc7942_0305 at 304.053 kb on + strand at 304.194 kb on - strand, within chlP at 304.227 kb on + strand, within chlP at 304.237 kb on + strand, within chlP at 304.237 kb on + strand, within chlP at 304.245 kb on - strand, within chlP at 304.245 kb on - strand, within chlP at 304.279 kb on + strand, within chlP at 304.279 kb on + strand, within chlP at 304.287 kb on - strand, within chlP at 304.287 kb on - strand, within chlP at 304.287 kb on - strand, within chlP at 304.325 kb on + strand at 304.325 kb on + strand at 304.325 kb on + strand at 304.325 kb on + strand at 304.325 kb on + strand at 304.325 kb on + strand at 304.325 kb on + strand at 304.325 kb on + strand at 304.333 kb on + strand at 304.333 kb on - strand at 304.333 kb on - strand at 304.377 kb on + strand at 304.377 kb on + strand at 304.388 kb on + strand at 304.415 kb on - strand at 304.415 kb on - strand at 304.427 kb on + strand at 304.427 kb on + strand at 304.440 kb on + strand at 304.458 kb on + strand at 304.459 kb on + strand at 304.466 kb on - strand at 304.466 kb on - strand at 304.481 kb on + strand at 304.489 kb on - strand at 304.489 kb on - strand at 304.489 kb on - strand at 304.499 kb on - strand at 304.504 kb on + strand at 304.531 kb on + strand at 304.531 kb on + strand at 304.531 kb on + strand at 304.546 kb on - strand at 304.554 kb on - strand at 304.586 kb on + strand at 304.591 kb on - strand at 304.608 kb on - strand at 304.608 kb on - strand at 304.624 kb on - strand at 304.642 kb on - strand at 304.685 kb on - strand at 304.686 kb on + strand at 304.686 kb on + strand at 304.686 kb on + strand at 304.686 kb on + strand at 304.694 kb on - strand at 304.694 kb on - strand at 304.694 kb on - strand at 304.694 kb on - strand at 304.694 kb on - strand at 304.704 kb on - strand at 304.709 kb on - strand at 304.710 kb on - strand at 304.730 kb on - strand at 304.759 kb on + strand at 304.759 kb on + strand at 304.767 kb on - strand at 304.767 kb on - strand at 304.790 kb on + strand at 304.790 kb on + strand at 304.798 kb on - strand at 304.798 kb on - strand at 304.817 kb on + strand at 304.825 kb on - strand at 304.875 kb on + strand, within napA at 304.875 kb on + strand, within napA at 304.875 kb on + strand, within napA at 304.888 kb on - strand, within napA at 304.919 kb on + strand, within napA at 304.947 kb on + strand, within napA at 304.947 kb on + strand, within napA at 304.955 kb on - strand, within napA at 304.955 kb on - strand, within napA at 304.955 kb on - strand, within napA at 304.955 kb on - strand, within napA at 304.955 kb on - strand, within napA at 304.955 kb on - strand, within napA at 304.966 kb on - strand, within napA at 304.970 kb on - strand, within napA at 305.040 kb on + strand, within napA at 305.040 kb on + strand, within napA at 305.040 kb on + strand, within napA at 305.048 kb on - strand, within napA at 305.048 kb on - strand, within napA at 305.065 kb on + strand, within napA at 305.073 kb on - strand, within napA at 305.075 kb on - strand, within napA at 305.078 kb on + strand at 305.085 kb on - strand, within napA at 305.108 kb on - strand, within napA at 305.177 kb on + strand, within napA at 305.199 kb on - strand, within napA at 305.205 kb on + strand, within napA at 305.227 kb on + strand, within napA at 305.247 kb on + strand, within napA at 305.267 kb on - strand, within napA at 305.291 kb on - strand at 305.326 kb on - strand, within napA at 305.328 kb on + strand, within napA at 305.333 kb on + strand, within napA at 305.333 kb on + strand, within napA at 305.341 kb on - strand, within napA at 305.341 kb on - strand, within napA
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (N) remove 303,063 + -0.5 303,082 - Synpcc7942_0304 0.38 +1.3 303,084 + Synpcc7942_0304 0.39 +1.3 303,084 + Synpcc7942_0304 0.39 -1.9 303,084 + +1.6 303,084 + Synpcc7942_0304 0.39 -2.7 303,084 + Synpcc7942_0304 0.39 -0.0 303,084 + Synpcc7942_0304 0.39 +1.0 303,092 - Synpcc7942_0304 0.40 -2.7 303,092 - Synpcc7942_0304 0.40 -1.1 303,114 + Synpcc7942_0304 0.43 -1.5 303,122 - Synpcc7942_0304 0.45 -1.0 303,129 + Synpcc7942_0304 0.46 +0.1 303,137 - Synpcc7942_0304 0.47 -1.4 303,150 + Synpcc7942_0304 0.49 -0.6 303,150 + Synpcc7942_0304 0.49 -1.0 303,165 + Synpcc7942_0304 0.51 +1.5 303,168 - Synpcc7942_0304 0.52 -0.7 303,257 + Synpcc7942_0304 0.65 -0.6 303,283 + Synpcc7942_0304 0.69 +0.1 303,283 + Synpcc7942_0304 0.69 +1.9 303,291 - Synpcc7942_0304 0.71 -0.9 303,291 - Synpcc7942_0304 0.71 +0.8 303,315 + Synpcc7942_0304 0.74 +0.2 303,315 + Synpcc7942_0304 0.74 +2.1 303,315 + Synpcc7942_0304 0.74 -0.6 303,315 + Synpcc7942_0304 0.74 +0.0 303,318 - Synpcc7942_0304 0.75 +1.0 303,323 - Synpcc7942_0304 0.76 +1.8 303,323 - Synpcc7942_0304 0.76 -0.1 303,336 - Synpcc7942_0304 0.78 +0.6 303,341 + Synpcc7942_0304 0.78 -0.5 303,382 - Synpcc7942_0304 0.85 -2.2 303,399 + Synpcc7942_0304 0.87 -0.3 303,414 + Synpcc7942_0304 0.90 -0.1 303,414 + Synpcc7942_0304 0.90 -1.8 303,416 + +0.5 303,473 - +2.1 303,482 - -0.8 303,482 - +1.0 303,493 - -1.2 303,511 + +2.3 303,511 + -0.7 303,519 - -1.0 303,520 + +0.7 303,521 + +0.9 303,528 - +1.0 303,528 - +2.4 303,528 - -0.7 303,529 - -0.5 303,532 + -1.1 303,532 + -1.2 303,540 - -1.4 303,765 + -2.1 303,765 + -0.2 303,777 + +1.2 303,810 + -0.2 303,856 + Synpcc7942_0305 0.18 +0.0 303,856 + Synpcc7942_0305 0.18 -1.0 303,864 - Synpcc7942_0305 0.21 -0.5 303,864 - Synpcc7942_0305 0.21 -0.2 303,883 + Synpcc7942_0305 0.29 -0.5 303,924 - Synpcc7942_0305 0.47 -1.5 304,053 + -0.7 304,194 - chlP Synpcc7942_0306 0.50 +1.6 304,227 + chlP Synpcc7942_0306 0.61 +2.5 304,237 + chlP Synpcc7942_0306 0.64 +0.9 304,237 + chlP Synpcc7942_0306 0.64 +0.1 304,245 - chlP Synpcc7942_0306 0.67 +1.2 304,245 - chlP Synpcc7942_0306 0.67 +1.7 304,279 + chlP Synpcc7942_0306 0.78 -1.1 304,279 + chlP Synpcc7942_0306 0.78 -0.9 304,287 - chlP Synpcc7942_0306 0.80 -1.4 304,287 - chlP Synpcc7942_0306 0.80 -1.2 304,287 - chlP Synpcc7942_0306 0.80 +0.8 304,325 + +1.4 304,325 + -1.1 304,325 + -0.8 304,325 + +0.8 304,325 + +2.0 304,325 + -0.1 304,325 + -1.4 304,325 + -1.4 304,333 + -0.2 304,333 - +0.6 304,333 - -1.0 304,377 + -2.1 304,377 + +1.6 304,388 + -3.2 304,415 - -1.3 304,415 - -1.8 304,427 + -1.4 304,427 + -0.3 304,440 + +0.8 304,458 + -1.1 304,459 + +0.7 304,466 - -1.5 304,466 - +1.2 304,481 + -0.8 304,489 - +2.6 304,489 - +2.7 304,489 - +0.2 304,499 - +1.7 304,504 + +1.9 304,531 + -0.6 304,531 + +0.0 304,531 + -0.1 304,546 - +1.5 304,554 - +1.1 304,586 + -0.4 304,591 - -0.8 304,608 - +1.5 304,608 - -3.2 304,624 - +0.1 304,642 - +0.5 304,685 - +1.6 304,686 + -1.8 304,686 + +0.7 304,686 + -0.6 304,686 + -0.5 304,694 - +0.7 304,694 - -0.5 304,694 - -1.3 304,694 - -1.2 304,694 - -2.1 304,704 - -1.2 304,709 - -0.2 304,710 - +0.3 304,730 - +0.9 304,759 + +0.3 304,759 + -0.9 304,767 - -1.0 304,767 - +0.5 304,790 + +0.2 304,790 + -0.7 304,798 - -1.2 304,798 - -1.2 304,817 + +1.3 304,825 - -1.0 304,875 + napA Synpcc7942_0307 0.13 -2.0 304,875 + napA Synpcc7942_0307 0.13 +0.1 304,875 + napA Synpcc7942_0307 0.13 -0.9 304,888 - napA Synpcc7942_0307 0.15 -0.2 304,919 + napA Synpcc7942_0307 0.17 -2.6 304,947 + napA Synpcc7942_0307 0.19 +0.3 304,947 + napA Synpcc7942_0307 0.19 +0.0 304,955 - napA Synpcc7942_0307 0.20 -1.3 304,955 - napA Synpcc7942_0307 0.20 -2.1 304,955 - napA Synpcc7942_0307 0.20 -0.6 304,955 - napA Synpcc7942_0307 0.20 -0.2 304,955 - napA Synpcc7942_0307 0.20 +2.0 304,955 - napA Synpcc7942_0307 0.20 +0.1 304,966 - napA Synpcc7942_0307 0.21 -1.1 304,970 - napA Synpcc7942_0307 0.21 -0.0 305,040 + napA Synpcc7942_0307 0.27 -1.3 305,040 + napA Synpcc7942_0307 0.27 +0.9 305,040 + napA Synpcc7942_0307 0.27 -0.3 305,048 - napA Synpcc7942_0307 0.28 +3.1 305,048 - napA Synpcc7942_0307 0.28 -0.2 305,065 + napA Synpcc7942_0307 0.29 +1.0 305,073 - napA Synpcc7942_0307 0.30 +0.2 305,075 - napA Synpcc7942_0307 0.30 +1.7 305,078 + +1.0 305,085 - napA Synpcc7942_0307 0.31 -0.4 305,108 - napA Synpcc7942_0307 0.32 +0.5 305,177 + napA Synpcc7942_0307 0.38 +0.5 305,199 - napA Synpcc7942_0307 0.40 -0.6 305,205 + napA Synpcc7942_0307 0.40 +0.0 305,227 + napA Synpcc7942_0307 0.42 +2.6 305,247 + napA Synpcc7942_0307 0.44 -0.0 305,267 - napA Synpcc7942_0307 0.45 +0.8 305,291 - +1.6 305,326 - napA Synpcc7942_0307 0.50 +0.1 305,328 + napA Synpcc7942_0307 0.50 -2.0 305,333 + napA Synpcc7942_0307 0.51 -2.1 305,333 + napA Synpcc7942_0307 0.51 +0.2 305,341 - napA Synpcc7942_0307 0.51 +0.1 305,341 - napA Synpcc7942_0307 0.51 +1.0
Or see this region's nucleotide sequence