Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0145

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpdhB and Synpcc7942_0144 are separated by 284 nucleotidesSynpcc7942_0144 and Synpcc7942_0145 overlap by 4 nucleotidesSynpcc7942_0145 and Synpcc7942_0146 are separated by 119 nucleotides Synpcc7942_0143: pdhB - pyruvate/2-oxoglutarate dehydrogenase complex dehydrogenase (E1) component, at 145,003 to 145,983 pdhB Synpcc7942_0144: Synpcc7942_0144 - hypothetical protein, at 146,268 to 146,720 _0144 Synpcc7942_0145: Synpcc7942_0145 - hypothetical protein, at 146,717 to 147,040 _0145 Synpcc7942_0146: Synpcc7942_0146 - hypothetical protein, at 147,160 to 147,855 _0146 Position (kb) 146 147 148Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 146.067 kb on - strandat 146.080 kb on - strandat 146.095 kb on + strandat 146.096 kb on - strandat 146.098 kb on + strandat 146.103 kb on - strandat 146.151 kb on + strandat 146.153 kb on - strandat 146.154 kb on - strandat 146.159 kb on - strandat 146.159 kb on - strandat 146.161 kb on + strandat 146.161 kb on + strandat 146.161 kb on + strandat 146.175 kb on - strandat 146.186 kb on - strandat 146.241 kb on - strandat 146.241 kb on - strandat 146.251 kb on + strandat 146.252 kb on + strandat 146.252 kb on + strandat 146.252 kb on + strandat 146.252 kb on + strandat 146.252 kb on + strandat 146.260 kb on - strandat 146.260 kb on - strandat 146.260 kb on - strandat 146.271 kb on - strandat 146.349 kb on + strand, within Synpcc7942_0144at 146.356 kb on - strand, within Synpcc7942_0144at 146.389 kb on - strandat 146.391 kb on + strand, within Synpcc7942_0144at 146.411 kb on - strand, within Synpcc7942_0144at 146.451 kb on + strand, within Synpcc7942_0144at 146.451 kb on + strand, within Synpcc7942_0144at 146.451 kb on + strand, within Synpcc7942_0144at 146.451 kb on + strand, within Synpcc7942_0144at 146.451 kb on + strand, within Synpcc7942_0144at 146.451 kb on + strand, within Synpcc7942_0144at 146.451 kb on + strand, within Synpcc7942_0144at 146.451 kb on + strand, within Synpcc7942_0144at 146.451 kb on + strand, within Synpcc7942_0144at 146.459 kb on - strand, within Synpcc7942_0144at 146.459 kb on - strand, within Synpcc7942_0144at 146.459 kb on - strandat 146.459 kb on - strand, within Synpcc7942_0144at 146.459 kb on - strand, within Synpcc7942_0144at 146.459 kb on - strand, within Synpcc7942_0144at 146.461 kb on + strand, within Synpcc7942_0144at 146.462 kb on + strand, within Synpcc7942_0144at 146.486 kb on + strand, within Synpcc7942_0144at 146.486 kb on + strand, within Synpcc7942_0144at 146.486 kb on + strand, within Synpcc7942_0144at 146.486 kb on + strand, within Synpcc7942_0144at 146.494 kb on - strand, within Synpcc7942_0144at 146.494 kb on - strand, within Synpcc7942_0144at 146.497 kb on + strand, within Synpcc7942_0144at 146.507 kb on + strand, within Synpcc7942_0144at 146.536 kb on + strand, within Synpcc7942_0144at 146.573 kb on - strand, within Synpcc7942_0144at 146.616 kb on - strand, within Synpcc7942_0144at 146.616 kb on - strand, within Synpcc7942_0144at 146.688 kb on - strandat 146.728 kb on - strandat 146.728 kb on - strandat 146.758 kb on + strand, within Synpcc7942_0145at 147.020 kb on + strandat 147.103 kb on + strandat 147.103 kb on + strandat 147.103 kb on + strandat 147.103 kb on + strandat 147.111 kb on - strandat 147.111 kb on - strandat 147.111 kb on - strandat 147.111 kb on - strandat 147.111 kb on - strandat 147.111 kb on - strandat 147.120 kb on - strandat 147.166 kb on + strandat 147.166 kb on + strandat 147.171 kb on + strandat 147.186 kb on - strandat 147.191 kb on - strandat 147.214 kb on + strandat 147.214 kb on + strandat 147.215 kb on - strandat 147.220 kb on + strandat 147.221 kb on + strandat 147.224 kb on - strandat 147.224 kb on - strandat 147.244 kb on + strand, within Synpcc7942_0146at 147.262 kb on + strand, within Synpcc7942_0146at 147.383 kb on + strand, within Synpcc7942_0146at 147.402 kb on - strand, within Synpcc7942_0146at 147.430 kb on + strand, within Synpcc7942_0146at 147.430 kb on + strand, within Synpcc7942_0146at 147.440 kb on + strand, within Synpcc7942_0146at 147.440 kb on + strand, within Synpcc7942_0146at 147.440 kb on + strand, within Synpcc7942_0146at 147.448 kb on - strand, within Synpcc7942_0146at 147.463 kb on + strand, within Synpcc7942_0146at 147.463 kb on + strand, within Synpcc7942_0146at 147.478 kb on + strand, within Synpcc7942_0146at 147.501 kb on + strand, within Synpcc7942_0146at 147.501 kb on + strand, within Synpcc7942_0146at 147.534 kb on + strand, within Synpcc7942_0146at 147.549 kb on - strand, within Synpcc7942_0146at 147.554 kb on + strand, within Synpcc7942_0146at 147.554 kb on + strand, within Synpcc7942_0146at 147.559 kb on - strand, within Synpcc7942_0146at 147.631 kb on + strand, within Synpcc7942_0146at 147.634 kb on + strandat 147.636 kb on + strand, within Synpcc7942_0146at 147.641 kb on + strand, within Synpcc7942_0146at 147.643 kb on - strand, within Synpcc7942_0146at 147.654 kb on + strand, within Synpcc7942_0146at 147.655 kb on + strand, within Synpcc7942_0146at 147.681 kb on + strand, within Synpcc7942_0146at 147.688 kb on + strand, within Synpcc7942_0146at 147.688 kb on + strand, within Synpcc7942_0146at 147.706 kb on - strand, within Synpcc7942_0146at 147.726 kb on + strand, within Synpcc7942_0146at 147.726 kb on + strand, within Synpcc7942_0146at 147.759 kb on + strand, within Synpcc7942_0146at 147.759 kb on + strand, within Synpcc7942_0146at 147.767 kb on - strand, within Synpcc7942_0146at 147.770 kb on + strand, within Synpcc7942_0146at 147.770 kb on + strand, within Synpcc7942_0146at 147.770 kb on + strand, within Synpcc7942_0146at 147.770 kb on + strand, within Synpcc7942_0146at 147.778 kb on + strand, within Synpcc7942_0146at 147.778 kb on - strand, within Synpcc7942_0146at 147.778 kb on - strand, within Synpcc7942_0146at 147.793 kb on + strandat 147.793 kb on + strandat 147.795 kb on - strandat 147.802 kb on - strandat 147.820 kb on + strandat 147.838 kb on + strandat 147.838 kb on + strandat 147.846 kb on - strandat 147.858 kb on - strandat 147.858 kb on - strandat 147.877 kb on - strandat 147.888 kb on + strandat 147.888 kb on + strandat 147.896 kb on - strandat 147.896 kb on - strandat 147.896 kb on - strandat 147.896 kb on - strandat 147.896 kb on - strandat 147.897 kb on - strandat 147.925 kb on - strandat 147.938 kb on + strandat 147.940 kb on + strandat 147.955 kb on + strandat 147.955 kb on + strandat 147.955 kb on + strandat 147.957 kb on + strandat 147.965 kb on - strandat 147.981 kb on - strandat 148.016 kb on - strandat 148.032 kb on + strandat 148.040 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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146,067 - -0.0
146,080 - -0.0
146,095 + -0.2
146,096 - +1.4
146,098 + -2.1
146,103 - -0.1
146,151 + +0.3
146,153 - -0.7
146,154 - -0.7
146,159 - -0.7
146,159 - -1.9
146,161 + +0.1
146,161 + +1.1
146,161 + -0.1
146,175 - -0.2
146,186 - +0.5
146,241 - -0.8
146,241 - +2.0
146,251 + -0.6
146,252 + -1.5
146,252 + -0.6
146,252 + +2.1
146,252 + +2.1
146,252 + -1.3
146,260 - +1.6
146,260 - -0.8
146,260 - +0.9
146,271 - -0.1
146,349 + Synpcc7942_0144 0.18 -0.1
146,356 - Synpcc7942_0144 0.19 +1.7
146,389 - +2.1
146,391 + Synpcc7942_0144 0.27 +2.4
146,411 - Synpcc7942_0144 0.32 +1.5
146,451 + Synpcc7942_0144 0.40 +1.9
146,451 + Synpcc7942_0144 0.40 -2.8
146,451 + Synpcc7942_0144 0.40 +1.8
146,451 + Synpcc7942_0144 0.40 -0.5
146,451 + Synpcc7942_0144 0.40 +0.3
146,451 + Synpcc7942_0144 0.40 -1.0
146,451 + Synpcc7942_0144 0.40 -0.8
146,451 + Synpcc7942_0144 0.40 +2.1
146,451 + Synpcc7942_0144 0.40 -1.2
146,459 - Synpcc7942_0144 0.42 -0.4
146,459 - Synpcc7942_0144 0.42 +1.5
146,459 - -0.0
146,459 - Synpcc7942_0144 0.42 -0.8
146,459 - Synpcc7942_0144 0.42 -2.0
146,459 - Synpcc7942_0144 0.42 +2.7
146,461 + Synpcc7942_0144 0.43 +1.7
146,462 + Synpcc7942_0144 0.43 -0.5
146,486 + Synpcc7942_0144 0.48 -1.0
146,486 + Synpcc7942_0144 0.48 +2.1
146,486 + Synpcc7942_0144 0.48 +0.5
146,486 + Synpcc7942_0144 0.48 -0.4
146,494 - Synpcc7942_0144 0.50 +0.1
146,494 - Synpcc7942_0144 0.50 +0.1
146,497 + Synpcc7942_0144 0.51 -0.6
146,507 + Synpcc7942_0144 0.53 -0.6
146,536 + Synpcc7942_0144 0.59 -2.2
146,573 - Synpcc7942_0144 0.67 -2.2
146,616 - Synpcc7942_0144 0.77 -0.9
146,616 - Synpcc7942_0144 0.77 -0.2
146,688 - -0.5
146,728 - -0.2
146,728 - -2.5
146,758 + Synpcc7942_0145 0.13 -1.1
147,020 + +0.2
147,103 + -0.3
147,103 + -0.7
147,103 + -1.2
147,103 + +0.0
147,111 - -0.4
147,111 - -0.4
147,111 - -0.6
147,111 - -1.3
147,111 - +1.1
147,111 - +0.4
147,120 - -1.2
147,166 + +1.2
147,166 + +1.8
147,171 + +1.1
147,186 - +1.6
147,191 - +1.3
147,214 + +0.9
147,214 + +2.1
147,215 - +0.1
147,220 + +2.1
147,221 + -1.5
147,224 - +1.0
147,224 - -0.2
147,244 + Synpcc7942_0146 0.12 -2.2
147,262 + Synpcc7942_0146 0.15 +1.4
147,383 + Synpcc7942_0146 0.32 -0.8
147,402 - Synpcc7942_0146 0.35 +0.1
147,430 + Synpcc7942_0146 0.39 +2.0
147,430 + Synpcc7942_0146 0.39 -0.4
147,440 + Synpcc7942_0146 0.40 -0.4
147,440 + Synpcc7942_0146 0.40 -0.2
147,440 + Synpcc7942_0146 0.40 -0.1
147,448 - Synpcc7942_0146 0.41 -1.0
147,463 + Synpcc7942_0146 0.44 +2.2
147,463 + Synpcc7942_0146 0.44 -0.4
147,478 + Synpcc7942_0146 0.46 +0.7
147,501 + Synpcc7942_0146 0.49 +1.3
147,501 + Synpcc7942_0146 0.49 -0.6
147,534 + Synpcc7942_0146 0.54 +1.8
147,549 - Synpcc7942_0146 0.56 -0.6
147,554 + Synpcc7942_0146 0.57 -0.5
147,554 + Synpcc7942_0146 0.57 +3.3
147,559 - Synpcc7942_0146 0.57 -1.3
147,631 + Synpcc7942_0146 0.68 +1.7
147,634 + +1.0
147,636 + Synpcc7942_0146 0.68 -0.3
147,641 + Synpcc7942_0146 0.69 +2.0
147,643 - Synpcc7942_0146 0.69 -0.8
147,654 + Synpcc7942_0146 0.71 +1.4
147,655 + Synpcc7942_0146 0.71 -0.3
147,681 + Synpcc7942_0146 0.75 -0.7
147,688 + Synpcc7942_0146 0.76 -1.1
147,688 + Synpcc7942_0146 0.76 +0.8
147,706 - Synpcc7942_0146 0.78 +0.4
147,726 + Synpcc7942_0146 0.81 -0.5
147,726 + Synpcc7942_0146 0.81 -0.9
147,759 + Synpcc7942_0146 0.86 +1.2
147,759 + Synpcc7942_0146 0.86 -0.6
147,767 - Synpcc7942_0146 0.87 -1.1
147,770 + Synpcc7942_0146 0.88 -1.7
147,770 + Synpcc7942_0146 0.88 +1.4
147,770 + Synpcc7942_0146 0.88 -1.7
147,770 + Synpcc7942_0146 0.88 -0.2
147,778 + Synpcc7942_0146 0.89 +2.1
147,778 - Synpcc7942_0146 0.89 +0.4
147,778 - Synpcc7942_0146 0.89 +0.6
147,793 + -0.6
147,793 + -1.3
147,795 - +2.7
147,802 - -0.8
147,820 + -0.9
147,838 + -0.6
147,838 + +1.1
147,846 - -0.9
147,858 - +1.5
147,858 - +0.2
147,877 - -0.9
147,888 + -0.7
147,888 + -0.8
147,896 - +1.7
147,896 - +1.9
147,896 - -1.7
147,896 - -0.7
147,896 - -0.5
147,897 - -1.5
147,925 - +0.6
147,938 + -1.5
147,940 + +1.7
147,955 + -1.2
147,955 + -0.4
147,955 + -1.5
147,957 + -0.6
147,965 - -1.1
147,981 - +0.6
148,016 - -0.8
148,032 + -0.3
148,040 - -2.0

Or see this region's nucleotide sequence