Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0081

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0080 and Synpcc7942_0081 are separated by 115 nucleotidesSynpcc7942_0081 and mdlB are separated by 68 nucleotides Synpcc7942_0080: Synpcc7942_0080 - probable ABC transporter permease protein, at 77,648 to 78,871 _0080 Synpcc7942_0081: Synpcc7942_0081 - RNA-binding S4, at 78,987 to 79,196 _0081 Synpcc7942_0082: mdlB - ATPase, at 79,265 to 81,013 mdlB Position (kb) 78 79 80Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6at 78.019 kb on + strand, within Synpcc7942_0080at 78.019 kb on + strand, within Synpcc7942_0080at 78.019 kb on + strand, within Synpcc7942_0080at 78.027 kb on - strand, within Synpcc7942_0080at 78.027 kb on - strand, within Synpcc7942_0080at 78.033 kb on - strand, within Synpcc7942_0080at 78.039 kb on - strand, within Synpcc7942_0080at 78.047 kb on + strand, within Synpcc7942_0080at 78.047 kb on + strand, within Synpcc7942_0080at 78.075 kb on + strand, within Synpcc7942_0080at 78.151 kb on + strandat 78.151 kb on + strand, within Synpcc7942_0080at 78.159 kb on - strand, within Synpcc7942_0080at 78.159 kb on - strand, within Synpcc7942_0080at 78.184 kb on + strand, within Synpcc7942_0080at 78.192 kb on - strand, within Synpcc7942_0080at 78.194 kb on + strand, within Synpcc7942_0080at 78.194 kb on + strandat 78.204 kb on - strand, within Synpcc7942_0080at 78.204 kb on - strand, within Synpcc7942_0080at 78.210 kb on + strand, within Synpcc7942_0080at 78.211 kb on - strand, within Synpcc7942_0080at 78.245 kb on + strand, within Synpcc7942_0080at 78.253 kb on - strand, within Synpcc7942_0080at 78.255 kb on + strand, within Synpcc7942_0080at 78.260 kb on - strand, within Synpcc7942_0080at 78.301 kb on - strand, within Synpcc7942_0080at 78.312 kb on - strand, within Synpcc7942_0080at 78.318 kb on - strand, within Synpcc7942_0080at 78.333 kb on + strand, within Synpcc7942_0080at 78.398 kb on + strand, within Synpcc7942_0080at 78.398 kb on + strand, within Synpcc7942_0080at 78.463 kb on + strand, within Synpcc7942_0080at 78.471 kb on - strand, within Synpcc7942_0080at 78.471 kb on - strand, within Synpcc7942_0080at 78.471 kb on - strand, within Synpcc7942_0080at 78.496 kb on - strand, within Synpcc7942_0080at 78.506 kb on + strand, within Synpcc7942_0080at 78.506 kb on + strand, within Synpcc7942_0080at 78.516 kb on - strand, within Synpcc7942_0080at 78.536 kb on - strand, within Synpcc7942_0080at 78.552 kb on + strand, within Synpcc7942_0080at 78.567 kb on - strand, within Synpcc7942_0080at 78.582 kb on + strand, within Synpcc7942_0080at 78.658 kb on + strand, within Synpcc7942_0080at 78.664 kb on + strand, within Synpcc7942_0080at 78.694 kb on + strand, within Synpcc7942_0080at 78.712 kb on + strand, within Synpcc7942_0080at 78.727 kb on + strand, within Synpcc7942_0080at 78.739 kb on + strand, within Synpcc7942_0080at 78.739 kb on + strand, within Synpcc7942_0080at 78.739 kb on + strand, within Synpcc7942_0080at 78.747 kb on - strand, within Synpcc7942_0080at 78.747 kb on - strand, within Synpcc7942_0080at 78.759 kb on - strandat 78.760 kb on + strandat 78.768 kb on - strandat 78.773 kb on + strandat 78.802 kb on - strandat 78.802 kb on - strandat 78.819 kb on - strandat 78.847 kb on + strandat 78.867 kb on - strandat 78.877 kb on - strandat 78.881 kb on - strandat 78.912 kb on + strandat 78.931 kb on + strandat 78.936 kb on + strandat 78.939 kb on - strandat 78.939 kb on - strandat 78.944 kb on - strandat 78.947 kb on + strandat 78.953 kb on + strandat 78.956 kb on - strandat 78.961 kb on - strandat 78.961 kb on - strandat 78.961 kb on - strandat 78.961 kb on - strandat 78.992 kb on - strandat 78.993 kb on - strandat 78.998 kb on - strandat 79.009 kb on + strand, within Synpcc7942_0081at 79.009 kb on + strand, within Synpcc7942_0081at 79.042 kb on + strand, within Synpcc7942_0081at 79.069 kb on + strand, within Synpcc7942_0081at 79.080 kb on + strand, within Synpcc7942_0081at 79.114 kb on + strand, within Synpcc7942_0081at 79.198 kb on + strandat 79.198 kb on + strandat 79.200 kb on - strandat 79.224 kb on + strandat 79.224 kb on + strandat 79.239 kb on + strandat 79.242 kb on - strandat 79.270 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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78,019 + Synpcc7942_0080 0.30 +1.0
78,019 + Synpcc7942_0080 0.30 +0.3
78,019 + Synpcc7942_0080 0.30 +0.8
78,027 - Synpcc7942_0080 0.31 +0.1
78,027 - Synpcc7942_0080 0.31 +1.0
78,033 - Synpcc7942_0080 0.31 +0.8
78,039 - Synpcc7942_0080 0.32 +1.5
78,047 + Synpcc7942_0080 0.33 +0.8
78,047 + Synpcc7942_0080 0.33 +1.1
78,075 + Synpcc7942_0080 0.35 +1.0
78,151 + -0.2
78,151 + Synpcc7942_0080 0.41 -0.9
78,159 - Synpcc7942_0080 0.42 +0.6
78,159 - Synpcc7942_0080 0.42 -0.8
78,184 + Synpcc7942_0080 0.44 +1.9
78,192 - Synpcc7942_0080 0.44 +0.9
78,194 + Synpcc7942_0080 0.45 -1.0
78,194 + +0.2
78,204 - Synpcc7942_0080 0.45 +0.1
78,204 - Synpcc7942_0080 0.45 -0.8
78,210 + Synpcc7942_0080 0.46 -0.7
78,211 - Synpcc7942_0080 0.46 -2.1
78,245 + Synpcc7942_0080 0.49 +1.1
78,253 - Synpcc7942_0080 0.49 -0.4
78,255 + Synpcc7942_0080 0.50 -0.8
78,260 - Synpcc7942_0080 0.50 +0.4
78,301 - Synpcc7942_0080 0.53 -1.6
78,312 - Synpcc7942_0080 0.54 -0.8
78,318 - Synpcc7942_0080 0.55 +1.1
78,333 + Synpcc7942_0080 0.56 +1.6
78,398 + Synpcc7942_0080 0.61 -2.1
78,398 + Synpcc7942_0080 0.61 -0.2
78,463 + Synpcc7942_0080 0.67 -0.2
78,471 - Synpcc7942_0080 0.67 +1.5
78,471 - Synpcc7942_0080 0.67 -0.4
78,471 - Synpcc7942_0080 0.67 -1.0
78,496 - Synpcc7942_0080 0.69 -0.6
78,506 + Synpcc7942_0080 0.70 -1.4
78,506 + Synpcc7942_0080 0.70 +1.4
78,516 - Synpcc7942_0080 0.71 +1.1
78,536 - Synpcc7942_0080 0.73 -0.4
78,552 + Synpcc7942_0080 0.74 +5.9
78,567 - Synpcc7942_0080 0.75 -1.2
78,582 + Synpcc7942_0080 0.76 -1.8
78,658 + Synpcc7942_0080 0.83 +1.3
78,664 + Synpcc7942_0080 0.83 +0.7
78,694 + Synpcc7942_0080 0.85 +2.0
78,712 + Synpcc7942_0080 0.87 +0.1
78,727 + Synpcc7942_0080 0.88 +0.1
78,739 + Synpcc7942_0080 0.89 +1.5
78,739 + Synpcc7942_0080 0.89 +0.2
78,739 + Synpcc7942_0080 0.89 -1.6
78,747 - Synpcc7942_0080 0.90 +0.3
78,747 - Synpcc7942_0080 0.90 -1.4
78,759 - -1.9
78,760 + +1.7
78,768 - -0.1
78,773 + -0.4
78,802 - -0.7
78,802 - -0.8
78,819 - -2.0
78,847 + -1.2
78,867 - +2.6
78,877 - -2.1
78,881 - -0.6
78,912 + -0.1
78,931 + +0.2
78,936 + +1.6
78,939 - -1.2
78,939 - -0.1
78,944 - -2.6
78,947 + -0.5
78,953 + +0.9
78,956 - +2.2
78,961 - -2.0
78,961 - +2.5
78,961 - +1.2
78,961 - -2.0
78,992 - -0.7
78,993 - +0.8
78,998 - +2.1
79,009 + Synpcc7942_0081 0.10 -0.9
79,009 + Synpcc7942_0081 0.10 -1.3
79,042 + Synpcc7942_0081 0.26 +0.4
79,069 + Synpcc7942_0081 0.39 -0.6
79,080 + Synpcc7942_0081 0.44 +0.8
79,114 + Synpcc7942_0081 0.60 -0.7
79,198 + -0.8
79,198 + -0.0
79,200 - -0.6
79,224 + -1.1
79,224 + +0.6
79,239 + -1.1
79,242 - -1.3
79,270 - +2.8

Or see this region's nucleotide sequence