Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0014

Experiment: L-Phenylalanine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0013 and Synpcc7942_0014 are separated by 38 nucleotidesSynpcc7942_0014 and Synpcc7942_0015 are separated by 165 nucleotides Synpcc7942_0013: Synpcc7942_0013 - hypothetical protein, at 12,321 to 13,028 _0013 Synpcc7942_0014: Synpcc7942_0014 - hypothetical protein, at 13,067 to 13,411 _0014 Synpcc7942_0015: Synpcc7942_0015 - putative hydroxylase, at 13,577 to 14,248 _0015 Position (kb) 13 14Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 12.074 kb on + strandat 12.112 kb on + strandat 12.120 kb on - strandat 12.120 kb on - strandat 12.127 kb on + strandat 12.135 kb on - strandat 12.177 kb on + strandat 12.185 kb on - strandat 12.191 kb on + strandat 12.201 kb on + strandat 12.201 kb on + strandat 12.209 kb on - strandat 12.209 kb on - strandat 12.221 kb on + strandat 12.353 kb on + strandat 12.360 kb on + strandat 12.360 kb on + strandat 12.596 kb on + strand, within Synpcc7942_0013at 12.604 kb on - strand, within Synpcc7942_0013at 12.625 kb on + strand, within Synpcc7942_0013at 12.641 kb on - strand, within Synpcc7942_0013at 12.641 kb on - strand, within Synpcc7942_0013at 12.642 kb on - strand, within Synpcc7942_0013at 12.669 kb on + strand, within Synpcc7942_0013at 12.669 kb on + strand, within Synpcc7942_0013at 12.769 kb on - strand, within Synpcc7942_0013at 12.789 kb on - strand, within Synpcc7942_0013at 12.862 kb on - strand, within Synpcc7942_0013at 12.875 kb on + strand, within Synpcc7942_0013at 12.960 kb on + strandat 12.960 kb on + strandat 12.960 kb on + strandat 12.960 kb on + strandat 12.960 kb on + strandat 12.968 kb on - strandat 13.021 kb on + strandat 13.021 kb on + strandat 13.060 kb on - strandat 13.082 kb on - strandat 13.115 kb on - strand, within Synpcc7942_0014at 13.115 kb on - strand, within Synpcc7942_0014at 13.461 kb on + strandat 13.461 kb on + strandat 13.462 kb on - strandat 13.469 kb on - strandat 13.472 kb on + strandat 13.481 kb on - strandat 13.499 kb on - strandat 13.503 kb on + strandat 13.511 kb on - strandat 13.511 kb on - strandat 13.541 kb on + strandat 13.547 kb on - strandat 13.549 kb on - strandat 13.553 kb on - strandat 13.557 kb on - strandat 13.570 kb on - strandat 13.574 kb on + strandat 13.574 kb on + strandat 13.574 kb on + strandat 13.574 kb on + strandat 13.574 kb on + strandat 13.574 kb on + strandat 13.574 kb on + strandat 13.574 kb on + strandat 13.574 kb on + strandat 13.574 kb on + strandat 13.574 kb on + strandat 13.579 kb on + strandat 13.582 kb on - strandat 13.582 kb on - strandat 13.582 kb on - strandat 13.582 kb on - strandat 13.582 kb on - strandat 13.582 kb on - strandat 13.582 kb on - strandat 13.587 kb on - strandat 13.637 kb on + strandat 13.645 kb on - strand, within Synpcc7942_0015at 13.679 kb on - strand, within Synpcc7942_0015at 13.735 kb on - strand, within Synpcc7942_0015at 13.749 kb on + strand, within Synpcc7942_0015at 13.749 kb on + strand, within Synpcc7942_0015at 13.776 kb on - strand, within Synpcc7942_0015at 13.776 kb on - strand, within Synpcc7942_0015at 13.776 kb on - strandat 13.778 kb on + strand, within Synpcc7942_0015at 13.781 kb on - strand, within Synpcc7942_0015at 13.783 kb on + strand, within Synpcc7942_0015at 13.786 kb on - strand, within Synpcc7942_0015at 13.786 kb on - strand, within Synpcc7942_0015at 13.786 kb on - strand, within Synpcc7942_0015at 13.791 kb on - strand, within Synpcc7942_0015at 13.802 kb on - strand, within Synpcc7942_0015at 13.824 kb on + strand, within Synpcc7942_0015at 13.829 kb on + strand, within Synpcc7942_0015at 13.829 kb on + strand, within Synpcc7942_0015at 13.832 kb on - strand, within Synpcc7942_0015at 13.834 kb on + strand, within Synpcc7942_0015at 13.834 kb on + strand, within Synpcc7942_0015at 13.834 kb on + strand, within Synpcc7942_0015at 13.842 kb on - strand, within Synpcc7942_0015at 13.842 kb on - strand, within Synpcc7942_0015at 13.842 kb on - strand, within Synpcc7942_0015at 13.842 kb on - strand, within Synpcc7942_0015at 13.846 kb on + strand, within Synpcc7942_0015at 13.848 kb on + strand, within Synpcc7942_0015at 13.856 kb on + strand, within Synpcc7942_0015at 13.856 kb on + strand, within Synpcc7942_0015at 13.864 kb on - strand, within Synpcc7942_0015at 13.864 kb on - strand, within Synpcc7942_0015at 13.869 kb on + strand, within Synpcc7942_0015at 13.870 kb on - strand, within Synpcc7942_0015at 13.870 kb on - strand, within Synpcc7942_0015at 13.879 kb on + strand, within Synpcc7942_0015at 13.907 kb on + strand, within Synpcc7942_0015at 13.910 kb on - strand, within Synpcc7942_0015at 13.915 kb on - strand, within Synpcc7942_0015at 13.967 kb on + strand, within Synpcc7942_0015at 13.983 kb on + strand, within Synpcc7942_0015at 13.991 kb on - strand, within Synpcc7942_0015at 14.016 kb on + strand, within Synpcc7942_0015at 14.022 kb on + strand, within Synpcc7942_0015at 14.034 kb on + strand, within Synpcc7942_0015at 14.042 kb on - strand, within Synpcc7942_0015at 14.181 kb on - strandat 14.182 kb on + strandat 14.182 kb on + strandat 14.192 kb on + strandat 14.200 kb on - strandat 14.207 kb on + strandat 14.215 kb on - strandat 14.225 kb on - strandat 14.228 kb on + strandat 14.236 kb on - strandat 14.364 kb on + strandat 14.372 kb on - strandat 14.383 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Phenylalanine (N)
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12,074 + -1.1
12,112 + +1.2
12,120 - +1.7
12,120 - +0.8
12,127 + -1.4
12,135 - +2.2
12,177 + -0.5
12,185 - -1.6
12,191 + -0.8
12,201 + +1.6
12,201 + -0.5
12,209 - -0.6
12,209 - -1.3
12,221 + -1.3
12,353 + -0.5
12,360 + -1.2
12,360 + -0.7
12,596 + Synpcc7942_0013 0.39 -1.3
12,604 - Synpcc7942_0013 0.40 -1.3
12,625 + Synpcc7942_0013 0.43 +2.0
12,641 - Synpcc7942_0013 0.45 -0.6
12,641 - Synpcc7942_0013 0.45 -1.0
12,642 - Synpcc7942_0013 0.45 -1.3
12,669 + Synpcc7942_0013 0.49 -0.3
12,669 + Synpcc7942_0013 0.49 +1.6
12,769 - Synpcc7942_0013 0.63 -0.5
12,789 - Synpcc7942_0013 0.66 +1.0
12,862 - Synpcc7942_0013 0.76 -0.3
12,875 + Synpcc7942_0013 0.78 -0.6
12,960 + +0.6
12,960 + -1.8
12,960 + -0.9
12,960 + +0.9
12,960 + -1.1
12,968 - +0.7
13,021 + -1.6
13,021 + +1.8
13,060 - +0.2
13,082 - -0.8
13,115 - Synpcc7942_0014 0.14 -0.4
13,115 - Synpcc7942_0014 0.14 -1.0
13,461 + +1.0
13,461 + -1.0
13,462 - +1.3
13,469 - -0.4
13,472 + -1.3
13,481 - -0.1
13,499 - +2.0
13,503 + -0.7
13,511 - +1.4
13,511 - -0.9
13,541 + +0.1
13,547 - +0.6
13,549 - +1.5
13,553 - +2.5
13,557 - -1.5
13,570 - +1.0
13,574 + -0.2
13,574 + +0.1
13,574 + +1.2
13,574 + +2.6
13,574 + +1.4
13,574 + +1.6
13,574 + -1.3
13,574 + -1.3
13,574 + -2.2
13,574 + +2.4
13,574 + +0.2
13,579 + +2.7
13,582 - -0.2
13,582 - -0.7
13,582 - -0.5
13,582 - -1.1
13,582 - +0.1
13,582 - +1.3
13,582 - -1.9
13,587 - -1.5
13,637 + -0.7
13,645 - Synpcc7942_0015 0.10 -0.4
13,679 - Synpcc7942_0015 0.15 -2.3
13,735 - Synpcc7942_0015 0.24 +1.7
13,749 + Synpcc7942_0015 0.26 +1.2
13,749 + Synpcc7942_0015 0.26 +0.3
13,776 - Synpcc7942_0015 0.30 +1.4
13,776 - Synpcc7942_0015 0.30 -1.0
13,776 - +0.2
13,778 + Synpcc7942_0015 0.30 +1.8
13,781 - Synpcc7942_0015 0.30 -1.0
13,783 + Synpcc7942_0015 0.31 +0.4
13,786 - Synpcc7942_0015 0.31 -0.7
13,786 - Synpcc7942_0015 0.31 +1.5
13,786 - Synpcc7942_0015 0.31 +2.0
13,791 - Synpcc7942_0015 0.32 -0.0
13,802 - Synpcc7942_0015 0.33 -0.0
13,824 + Synpcc7942_0015 0.37 +0.8
13,829 + Synpcc7942_0015 0.38 +2.6
13,829 + Synpcc7942_0015 0.38 +2.0
13,832 - Synpcc7942_0015 0.38 -0.7
13,834 + Synpcc7942_0015 0.38 +1.3
13,834 + Synpcc7942_0015 0.38 -0.4
13,834 + Synpcc7942_0015 0.38 -0.6
13,842 - Synpcc7942_0015 0.39 +2.0
13,842 - Synpcc7942_0015 0.39 +0.5
13,842 - Synpcc7942_0015 0.39 -0.4
13,842 - Synpcc7942_0015 0.39 -0.8
13,846 + Synpcc7942_0015 0.40 +2.4
13,848 + Synpcc7942_0015 0.40 +1.2
13,856 + Synpcc7942_0015 0.42 +0.5
13,856 + Synpcc7942_0015 0.42 -0.7
13,864 - Synpcc7942_0015 0.43 -0.3
13,864 - Synpcc7942_0015 0.43 -1.1
13,869 + Synpcc7942_0015 0.43 +0.8
13,870 - Synpcc7942_0015 0.44 +0.0
13,870 - Synpcc7942_0015 0.44 -0.4
13,879 + Synpcc7942_0015 0.45 -1.1
13,907 + Synpcc7942_0015 0.49 +1.8
13,910 - Synpcc7942_0015 0.50 -0.3
13,915 - Synpcc7942_0015 0.50 +2.3
13,967 + Synpcc7942_0015 0.58 +0.6
13,983 + Synpcc7942_0015 0.60 -0.4
13,991 - Synpcc7942_0015 0.62 -2.8
14,016 + Synpcc7942_0015 0.65 -0.7
14,022 + Synpcc7942_0015 0.66 -3.8
14,034 + Synpcc7942_0015 0.68 +1.6
14,042 - Synpcc7942_0015 0.69 +0.8
14,181 - -1.8
14,182 + -1.0
14,182 + +1.6
14,192 + -0.2
14,200 - -0.1
14,207 + +0.9
14,215 - -0.5
14,225 - +1.1
14,228 + +1.9
14,236 - -0.1
14,364 + -0.5
14,372 - +0.2
14,383 - +0.1

Or see this region's nucleotide sequence