Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01054

Experiment: PYE 4C survival rep3 28 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE 4C survival rep3 28 days
1,152,335	+		CCNA_01053	0.12	+2.5
1,152,361	+		CCNA_01053	0.14	+0.1
1,152,361	+		CCNA_01053	0.14	-2.4
1,152,371	+		CCNA_01053	0.15	+2.5
1,152,371	+		CCNA_01053	0.15	-1.2
1,152,371	+		CCNA_01053	0.15	-3.3
1,152,391	-		CCNA_01053	0.17	-1.3
1,152,392	-		CCNA_01053	0.17	-0.0
1,152,419	-		CCNA_01053	0.20	-0.9
1,152,422	+		CCNA_01053	0.20	+0.5
1,152,430	-		CCNA_01053	0.21	+1.5
1,152,471	+		CCNA_01053	0.24	-3.4
1,152,479	-		CCNA_01053	0.25	-3.4
1,152,520	+		CCNA_01053	0.29	-2.3
1,152,533	-		CCNA_01053	0.30	-0.6
1,152,534	+		CCNA_01053	0.30	-1.6
1,152,542	+		CCNA_01053	0.31	-1.0
1,152,542	+		CCNA_01053	0.31	-1.0
1,152,550	-		CCNA_01053	0.32	-1.5
1,152,550	-		CCNA_01053	0.32	-0.8
1,152,584	+		CCNA_01053	0.35	+0.4
1,152,593	+		CCNA_01053	0.35	-1.2
1,152,601	-		CCNA_01053	0.36	+0.5
1,152,602	-		CCNA_01053	0.36	-2.2
1,152,691	+		CCNA_01053	0.44	+1.0
1,152,691	+		CCNA_01053	0.44	-1.0
1,152,699	-		CCNA_01053	0.45	+1.3
1,152,727	+		CCNA_01053	0.48	-2.1
1,152,770	-		CCNA_01053	0.51	+0.7
1,152,821	+		CCNA_01053	0.56	+1.8
1,152,829	-		CCNA_01053	0.57	+0.2
1,152,838	-		CCNA_01053	0.58	+1.1
1,152,845	+		CCNA_01053	0.58	-2.7
1,152,845	+		CCNA_01053	0.58	+0.7
1,152,845	+		CCNA_01053	0.58	-2.5
1,152,845	+		CCNA_01053	0.58	-1.4
1,152,845	+		CCNA_01053	0.58	+1.2
1,152,845	+		CCNA_01053	0.58	-1.6
1,152,845	+		CCNA_01053	0.58	-1.6
1,152,845	+		CCNA_01053	0.58	-2.5
1,152,845	+		CCNA_01053	0.58	-2.0
1,152,853	-		CCNA_01053	0.59	+1.1
1,152,853	-		CCNA_01053	0.59	+6.0
1,152,853	-		CCNA_01053	0.59	+1.3
1,152,853	-		CCNA_01053	0.59	-0.1
1,152,853	-		CCNA_01053	0.59	+0.2
1,152,853	-		CCNA_01053	0.59	+1.0
1,152,945	+		CCNA_01053	0.67	-2.3
1,152,945	+		CCNA_01053	0.67	-0.0
1,152,945	+		CCNA_01053	0.67	-2.2
1,152,945	+		CCNA_01053	0.67	-0.8
1,152,945	+		CCNA_01053	0.67	-0.6
1,152,950	+		CCNA_01053	0.68	-2.0
1,152,953	-		CCNA_01053	0.68	-0.3
1,152,953	-		CCNA_01053	0.68	+0.2
1,152,953	-		CCNA_01053	0.68	-2.1
1,152,953	-		CCNA_01053	0.68	+2.5
1,152,953	-		CCNA_01053	0.68	-0.4
1,152,963	-		CCNA_01053	0.69	+1.8
1,152,963	-		CCNA_01053	0.69	-1.5
1,152,970	+		CCNA_01053	0.69	+1.7
1,152,978	-		CCNA_01053	0.70	+0.3
1,153,034	-		CCNA_01053	0.75	-2.2
1,153,034	-		CCNA_01053	0.75	-0.9
1,153,036	+		CCNA_01053	0.75	-0.4
1,153,109	+		CCNA_01053	0.82	+0.5
1,153,124	-		CCNA_01053	0.83	+0.7
1,153,154	+		CCNA_01053	0.86	+0.8
1,153,168	+		CCNA_01053	0.87	+0.0
1,153,183	+		CCNA_01053	0.89	-2.3
1,153,190	-		CCNA_01053	0.89	-2.6
1,153,256	+				-0.6
1,153,269	-				-2.9
1,153,320	-				+0.5
1,153,320	-				-1.5
1,153,363	-				+2.5
1,153,408	-				-0.9
1,153,431	+				+1.5
1,153,431	+				-1.9
1,153,431	+				-1.1
1,153,439	-				+0.8
1,153,445	-				-0.3
1,153,445	-				-2.4
1,153,446	+				+0.9
1,153,455	-				-0.1
1,153,470	+				+0.5
1,153,470	+				+2.0
1,153,470	+				-1.7
1,153,556	-		CCNA_01054	0.15	-2.2
1,153,567	+		CCNA_01054	0.16	+0.3
1,153,567	-		CCNA_01054	0.16	+0.5
1,153,578	-		CCNA_01054	0.16	-1.1
1,153,693	-		CCNA_01054	0.24	+0.4
1,153,727	-		CCNA_01054	0.26	+1.1
1,153,758	-		CCNA_01054	0.28	-0.2
1,153,760	+		CCNA_01054	0.29	-0.5
1,153,768	-		CCNA_01054	0.29	-1.7
1,153,780	-		CCNA_01054	0.30	-0.1
1,153,782	+		CCNA_01054	0.30	-0.0
1,153,962	+		CCNA_01054	0.42	-0.2
1,153,967	+		CCNA_01054	0.42	+0.0
1,153,969	+		CCNA_01054	0.43	+0.2
1,153,969	+		CCNA_01054	0.43	-2.7
1,153,969	+		CCNA_01054	0.43	-0.9
1,153,976	-		CCNA_01054	0.43	-0.9
1,153,977	-		CCNA_01054	0.43	-0.1
1,153,977	-		CCNA_01054	0.43	-2.2
1,153,977	-		CCNA_01054	0.43	+2.5
1,153,977	-		CCNA_01054	0.43	-0.9
1,154,023	-		CCNA_01054	0.46	-0.5
1,154,043	-		CCNA_01054	0.47	+2.2
1,154,054	+		CCNA_01054	0.48	-2.5
1,154,054	+		CCNA_01054	0.48	-2.3
1,154,054	+		CCNA_01054	0.48	+0.2
1,154,054	+		CCNA_01054	0.48	-2.1
1,154,054	+		CCNA_01054	0.48	+0.1
1,154,054	+		CCNA_01054	0.48	+0.2
1,154,062	-		CCNA_01054	0.49	+2.5
1,154,062	-		CCNA_01054	0.49	-0.9
1,154,062	-		CCNA_01054	0.49	+1.4
1,154,081	-		CCNA_01054	0.50	-1.1
1,154,084	+		CCNA_01054	0.50	+1.0
1,154,085	+		CCNA_01054	0.50	-1.0
1,154,092	-		CCNA_01054	0.51	-1.3
1,154,133	+		CCNA_01054	0.53	+0.2
1,154,133	+		CCNA_01054	0.53	-3.3
1,154,239	-		CCNA_01054	0.61	-1.9
1,154,269	-		CCNA_01054	0.63	-0.2
1,154,288	-		CCNA_01054	0.64	+0.2
1,154,304	+		CCNA_01054	0.65	-0.3
1,154,304	+		CCNA_01054	0.65	-2.7
1,154,312	-		CCNA_01054	0.65	+0.6
1,154,362	-		CCNA_01054	0.69	-0.5
1,154,392	+		CCNA_01054	0.71	+0.1
1,154,400	-		CCNA_01054	0.71	-0.5
1,154,414	-		CCNA_01054	0.72	-0.2
1,154,426	+		CCNA_01054	0.73	-0.1
1,154,451	-		CCNA_01054	0.75	-1.4
1,154,456	-		CCNA_01054	0.75	-3.3
1,154,485	+		CCNA_01054	0.77	-0.4
1,154,488	-		CCNA_01054	0.77	-2.7
1,154,519	+		CCNA_01054	0.79	-0.4
1,154,530	+		CCNA_01054	0.80	-0.8
1,154,538	+		CCNA_01054	0.80	-1.1
1,154,556	+		CCNA_01054	0.82	-2.4
1,154,599	+		CCNA_01054	0.85	-0.8
1,154,605	-		CCNA_01054	0.85	+0.3
1,154,645	-		CCNA_01054	0.88	-0.9
1,154,657	-		CCNA_01054	0.88	-0.3
1,154,669	+		CCNA_01054	0.89	-1.7
1,154,681	-				-0.8
1,154,698	-				-1.5
1,154,733	+				-2.8
1,154,759	+				-1.8
1,154,759	+				-0.5
1,154,759	+				+1.7
1,154,767	-				+1.2
1,154,767	-				+0.3
1,154,824	+				+4.9
1,154,847	-				+2.0
1,154,871	+				-0.3
1,154,876	-				+0.1
1,154,879	-				-2.7
1,154,881	+				-1.5
1,154,881	+				-2.7
1,154,889	-				+0.9
1,154,889	-				-1.1
1,154,912	+				-4.2
1,154,980	+		CCNA_01055	0.10	-1.8
1,154,982	-		CCNA_01055	0.11	+0.7
1,155,005	-		CCNA_01055	0.12	-0.9
1,155,006	-		CCNA_01055	0.12	+1.8
1,155,021	-		CCNA_01055	0.14	+0.8
1,155,025	+		CCNA_01055	0.14	-1.7
1,155,033	+		CCNA_01055	0.14	-0.8
1,155,043	+				+1.2
1,155,192	+		CCNA_01055	0.27	-1.2
1,155,200	-		CCNA_01055	0.27	+0.3
1,155,224	-		CCNA_01055	0.29	+1.2
1,155,224	-		CCNA_01055	0.29	-0.4
1,155,247	+		CCNA_01055	0.31	-1.7
1,155,370	+		CCNA_01055	0.40	+0.6
1,155,378	-		CCNA_01055	0.41	+0.5
1,155,380	-		CCNA_01055	0.41	+0.2
1,155,397	-		CCNA_01055	0.42	+0.6
1,155,426	+		CCNA_01055	0.45	-0.1
1,155,428	-		CCNA_01055	0.45	-0.1
1,155,437	+		CCNA_01055	0.45	-0.3
1,155,445	-		CCNA_01055	0.46	-1.1
1,155,462	-		CCNA_01055	0.47	+0.8
1,155,513	-		CCNA_01055	0.51	+2.1
1,155,559	+		CCNA_01055	0.55	-2.8
1,155,562	-		CCNA_01055	0.55	-0.0
1,155,567	-		CCNA_01055	0.55	+1.5
1,155,567	-		CCNA_01055	0.55	+1.3
1,155,567	-		CCNA_01055	0.55	+2.8
1,155,697	+		CCNA_01055	0.65	+4.5
1,155,713	+		CCNA_01055	0.67	-2.8
1,155,716	-		CCNA_01055	0.67	+0.2
1,155,716	-		CCNA_01055	0.67	+1.4
1,155,727	+		CCNA_01055	0.68	-3.4
1,155,740	+		CCNA_01055	0.69	+1.0
1,155,748	-		CCNA_01055	0.69	-0.7
1,155,789	-		CCNA_01055	0.72	+0.8
1,155,791	+				-1.3
1,155,802	+		CCNA_01055	0.73	-3.0
1,155,806	+		CCNA_01055	0.74	+1.5
1,155,812	-		CCNA_01055	0.74	+1.1