Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00836

Experiment: PYE 4C survival rep3 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00835 and CCNA_00836 are separated by 335 nucleotidesCCNA_00836 and CCNA_00837 are separated by 110 nucleotides CCNA_00835: CCNA_00835 - flagellin FljN, at 901,034 to 901,855 _00835 CCNA_00836: CCNA_00836 - flagellin FljO, at 902,191 to 903,012 _00836 CCNA_00837: CCNA_00837 - alpha-L-fucosidase, at 903,123 to 904,739 _00837 Position (kb) 902 903 904Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 901.360 kb on + strand, within CCNA_00835at 901.360 kb on + strand, within CCNA_00835at 901.405 kb on + strand, within CCNA_00835at 901.410 kb on - strand, within CCNA_00835at 901.424 kb on + strand, within CCNA_00835at 901.461 kb on + strand, within CCNA_00835at 901.494 kb on + strand, within CCNA_00835at 901.494 kb on + strand, within CCNA_00835at 901.494 kb on + strand, within CCNA_00835at 901.494 kb on + strand, within CCNA_00835at 901.494 kb on + strand, within CCNA_00835at 901.494 kb on + strand, within CCNA_00835at 901.494 kb on + strand, within CCNA_00835at 901.494 kb on + strand, within CCNA_00835at 901.502 kb on - strand, within CCNA_00835at 901.502 kb on - strand, within CCNA_00835at 901.520 kb on + strand, within CCNA_00835at 901.521 kb on + strand, within CCNA_00835at 901.523 kb on - strand, within CCNA_00835at 901.529 kb on - strand, within CCNA_00835at 901.529 kb on - strand, within CCNA_00835at 901.529 kb on - strand, within CCNA_00835at 901.533 kb on - strand, within CCNA_00835at 901.534 kb on - strand, within CCNA_00835at 901.534 kb on - strand, within CCNA_00835at 901.536 kb on + strand, within CCNA_00835at 901.536 kb on + strand, within CCNA_00835at 901.536 kb on + strand, within CCNA_00835at 901.536 kb on + strand, within CCNA_00835at 901.536 kb on + strand, within CCNA_00835at 901.536 kb on + strand, within CCNA_00835at 901.536 kb on + strand, within CCNA_00835at 901.544 kb on - strand, within CCNA_00835at 901.544 kb on - strand, within CCNA_00835at 901.544 kb on - strand, within CCNA_00835at 901.544 kb on - strand, within CCNA_00835at 901.544 kb on - strand, within CCNA_00835at 901.559 kb on + strand, within CCNA_00835at 901.559 kb on + strand, within CCNA_00835at 901.567 kb on - strand, within CCNA_00835at 901.569 kb on - strand, within CCNA_00835at 901.569 kb on - strand, within CCNA_00835at 901.618 kb on - strand, within CCNA_00835at 901.618 kb on - strand, within CCNA_00835at 901.693 kb on + strand, within CCNA_00835at 901.694 kb on + strand, within CCNA_00835at 901.694 kb on + strand, within CCNA_00835at 901.694 kb on + strand, within CCNA_00835at 901.694 kb on + strand, within CCNA_00835at 901.768 kb on - strand, within CCNA_00835at 901.768 kb on - strand, within CCNA_00835at 901.771 kb on + strand, within CCNA_00835at 901.794 kb on + strandat 901.821 kb on + strandat 901.869 kb on - strandat 901.878 kb on + strandat 901.927 kb on - strandat 902.027 kb on + strandat 902.049 kb on + strandat 902.130 kb on + strandat 902.177 kb on - strandat 902.177 kb on - strandat 902.194 kb on + strandat 902.202 kb on - strandat 902.258 kb on + strandat 902.263 kb on + strandat 902.266 kb on - strandat 902.314 kb on + strand, within CCNA_00836at 902.322 kb on + strand, within CCNA_00836at 902.322 kb on - strand, within CCNA_00836at 902.322 kb on - strand, within CCNA_00836at 902.327 kb on - strand, within CCNA_00836at 902.331 kb on + strand, within CCNA_00836at 902.340 kb on - strand, within CCNA_00836at 902.440 kb on - strand, within CCNA_00836at 902.488 kb on + strand, within CCNA_00836at 902.488 kb on + strand, within CCNA_00836at 902.500 kb on + strand, within CCNA_00836at 902.510 kb on - strand, within CCNA_00836at 902.510 kb on - strand, within CCNA_00836at 902.517 kb on + strand, within CCNA_00836at 902.557 kb on + strand, within CCNA_00836at 902.559 kb on + strand, within CCNA_00836at 902.570 kb on - strand, within CCNA_00836at 902.570 kb on - strand, within CCNA_00836at 902.623 kb on + strand, within CCNA_00836at 902.625 kb on + strand, within CCNA_00836at 902.632 kb on + strand, within CCNA_00836at 902.664 kb on - strand, within CCNA_00836at 902.692 kb on + strand, within CCNA_00836at 902.698 kb on + strand, within CCNA_00836at 902.700 kb on - strand, within CCNA_00836at 902.706 kb on - strand, within CCNA_00836at 902.719 kb on - strand, within CCNA_00836at 902.725 kb on - strand, within CCNA_00836at 902.851 kb on + strand, within CCNA_00836at 902.851 kb on + strand, within CCNA_00836at 902.860 kb on + strand, within CCNA_00836at 902.861 kb on + strand, within CCNA_00836at 902.861 kb on + strand, within CCNA_00836at 902.872 kb on + strand, within CCNA_00836at 902.886 kb on + strand, within CCNA_00836at 902.904 kb on - strand, within CCNA_00836at 903.013 kb on + strandat 903.036 kb on - strandat 903.064 kb on + strandat 903.072 kb on - strandat 903.111 kb on + strandat 903.126 kb on + strandat 903.129 kb on - strandat 903.131 kb on + strandat 903.134 kb on - strandat 903.166 kb on + strandat 903.213 kb on - strandat 903.220 kb on - strandat 903.233 kb on - strandat 903.233 kb on - strandat 903.233 kb on - strandat 903.252 kb on - strandat 903.264 kb on + strandat 903.266 kb on + strandat 903.266 kb on + strandat 903.266 kb on + strandat 903.269 kb on - strandat 903.274 kb on - strandat 903.312 kb on + strand, within CCNA_00837at 903.312 kb on + strand, within CCNA_00837at 903.320 kb on - strand, within CCNA_00837at 903.320 kb on - strand, within CCNA_00837at 903.320 kb on - strand, within CCNA_00837at 903.320 kb on - strand, within CCNA_00837at 903.324 kb on + strand, within CCNA_00837at 903.325 kb on + strandat 903.333 kb on - strand, within CCNA_00837at 903.333 kb on - strand, within CCNA_00837at 903.335 kb on - strand, within CCNA_00837at 903.342 kb on - strand, within CCNA_00837at 903.367 kb on + strand, within CCNA_00837at 903.404 kb on - strand, within CCNA_00837at 903.411 kb on - strand, within CCNA_00837at 903.436 kb on - strand, within CCNA_00837at 903.447 kb on - strand, within CCNA_00837at 903.447 kb on - strand, within CCNA_00837at 903.447 kb on - strand, within CCNA_00837at 903.447 kb on - strand, within CCNA_00837at 903.447 kb on - strand, within CCNA_00837at 903.464 kb on + strand, within CCNA_00837at 903.471 kb on - strand, within CCNA_00837at 903.552 kb on + strand, within CCNA_00837at 903.555 kb on - strand, within CCNA_00837at 903.593 kb on + strand, within CCNA_00837at 903.616 kb on + strand, within CCNA_00837at 903.658 kb on - strand, within CCNA_00837at 903.672 kb on + strand, within CCNA_00837at 903.672 kb on + strand, within CCNA_00837at 903.679 kb on - strand, within CCNA_00837at 903.690 kb on - strand, within CCNA_00837at 903.694 kb on + strand, within CCNA_00837at 903.761 kb on + strandat 903.797 kb on + strand, within CCNA_00837at 903.805 kb on - strand, within CCNA_00837at 903.807 kb on - strand, within CCNA_00837at 903.809 kb on + strand, within CCNA_00837at 903.839 kb on + strand, within CCNA_00837at 903.883 kb on + strand, within CCNA_00837at 903.957 kb on - strand, within CCNA_00837at 903.967 kb on + strand, within CCNA_00837at 903.978 kb on + strand, within CCNA_00837

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 4C survival rep3 28 days
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901,360 + CCNA_00835 0.40 +2.3
901,360 + CCNA_00835 0.40 +0.6
901,405 + CCNA_00835 0.45 +0.8
901,410 - CCNA_00835 0.46 -2.5
901,424 + CCNA_00835 0.47 -0.4
901,461 + CCNA_00835 0.52 +0.4
901,494 + CCNA_00835 0.56 +0.5
901,494 + CCNA_00835 0.56 +0.5
901,494 + CCNA_00835 0.56 +1.6
901,494 + CCNA_00835 0.56 +1.3
901,494 + CCNA_00835 0.56 +0.9
901,494 + CCNA_00835 0.56 -2.5
901,494 + CCNA_00835 0.56 -1.1
901,494 + CCNA_00835 0.56 -2.7
901,502 - CCNA_00835 0.57 -1.3
901,502 - CCNA_00835 0.57 -0.6
901,520 + CCNA_00835 0.59 +1.3
901,521 + CCNA_00835 0.59 -3.0
901,523 - CCNA_00835 0.59 +0.2
901,529 - CCNA_00835 0.60 -1.3
901,529 - CCNA_00835 0.60 +1.6
901,529 - CCNA_00835 0.60 -2.4
901,533 - CCNA_00835 0.61 -1.9
901,534 - CCNA_00835 0.61 -2.1
901,534 - CCNA_00835 0.61 +1.6
901,536 + CCNA_00835 0.61 -1.2
901,536 + CCNA_00835 0.61 -2.1
901,536 + CCNA_00835 0.61 +1.8
901,536 + CCNA_00835 0.61 -2.3
901,536 + CCNA_00835 0.61 -0.2
901,536 + CCNA_00835 0.61 -1.2
901,536 + CCNA_00835 0.61 +0.8
901,544 - CCNA_00835 0.62 -3.6
901,544 - CCNA_00835 0.62 -3.4
901,544 - CCNA_00835 0.62 -1.6
901,544 - CCNA_00835 0.62 -2.3
901,544 - CCNA_00835 0.62 -2.1
901,559 + CCNA_00835 0.64 +1.5
901,559 + CCNA_00835 0.64 +1.3
901,567 - CCNA_00835 0.65 -2.4
901,569 - CCNA_00835 0.65 +1.0
901,569 - CCNA_00835 0.65 +1.0
901,618 - CCNA_00835 0.71 +0.8
901,618 - CCNA_00835 0.71 -1.6
901,693 + CCNA_00835 0.80 +1.3
901,694 + CCNA_00835 0.80 -0.9
901,694 + CCNA_00835 0.80 +2.7
901,694 + CCNA_00835 0.80 +0.4
901,694 + CCNA_00835 0.80 +0.3
901,768 - CCNA_00835 0.89 -4.1
901,768 - CCNA_00835 0.89 -3.5
901,771 + CCNA_00835 0.90 +1.1
901,794 + -0.8
901,821 + +1.2
901,869 - -0.6
901,878 + +0.5
901,927 - -1.5
902,027 + +0.6
902,049 + -1.1
902,130 + +1.0
902,177 - +1.1
902,177 - -1.3
902,194 + +1.6
902,202 - +2.6
902,258 + +1.0
902,263 + +2.6
902,266 - -0.4
902,314 + CCNA_00836 0.15 +0.4
902,322 + CCNA_00836 0.16 -1.8
902,322 - CCNA_00836 0.16 -0.3
902,322 - CCNA_00836 0.16 +0.6
902,327 - CCNA_00836 0.17 -1.0
902,331 + CCNA_00836 0.17 +2.6
902,340 - CCNA_00836 0.18 +1.0
902,440 - CCNA_00836 0.30 +1.2
902,488 + CCNA_00836 0.36 +3.0
902,488 + CCNA_00836 0.36 -0.3
902,500 + CCNA_00836 0.38 -1.1
902,510 - CCNA_00836 0.39 -1.3
902,510 - CCNA_00836 0.39 -1.1
902,517 + CCNA_00836 0.40 +2.9
902,557 + CCNA_00836 0.45 +2.1
902,559 + CCNA_00836 0.45 +0.2
902,570 - CCNA_00836 0.46 +2.6
902,570 - CCNA_00836 0.46 -1.6
902,623 + CCNA_00836 0.53 +2.1
902,625 + CCNA_00836 0.53 -1.5
902,632 + CCNA_00836 0.54 +1.0
902,664 - CCNA_00836 0.58 +1.5
902,692 + CCNA_00836 0.61 -0.2
902,698 + CCNA_00836 0.62 +0.6
902,700 - CCNA_00836 0.62 -0.2
902,706 - CCNA_00836 0.63 -0.3
902,719 - CCNA_00836 0.64 +1.0
902,725 - CCNA_00836 0.65 +1.6
902,851 + CCNA_00836 0.80 -0.0
902,851 + CCNA_00836 0.80 +1.7
902,860 + CCNA_00836 0.81 -0.4
902,861 + CCNA_00836 0.82 +1.5
902,861 + CCNA_00836 0.82 +0.8
902,872 + CCNA_00836 0.83 +1.8
902,886 + CCNA_00836 0.85 +4.3
902,904 - CCNA_00836 0.87 -1.9
903,013 + +1.1
903,036 - -0.9
903,064 + +0.7
903,072 - -0.4
903,111 + -0.6
903,126 + -1.1
903,129 - +1.4
903,131 + -0.3
903,134 - +0.7
903,166 + -0.3
903,213 - +0.4
903,220 - -0.4
903,233 - -4.1
903,233 - +0.9
903,233 - -2.3
903,252 - -2.1
903,264 + +0.2
903,266 + +0.4
903,266 + +1.7
903,266 + -0.0
903,269 - +0.2
903,274 - +0.4
903,312 + CCNA_00837 0.12 -1.1
903,312 + CCNA_00837 0.12 -1.0
903,320 - CCNA_00837 0.12 +2.0
903,320 - CCNA_00837 0.12 +0.9
903,320 - CCNA_00837 0.12 -2.8
903,320 - CCNA_00837 0.12 +2.0
903,324 + CCNA_00837 0.12 +1.0
903,325 + -1.8
903,333 - CCNA_00837 0.13 -0.7
903,333 - CCNA_00837 0.13 +0.1
903,335 - CCNA_00837 0.13 +0.2
903,342 - CCNA_00837 0.14 -0.7
903,367 + CCNA_00837 0.15 -2.4
903,404 - CCNA_00837 0.17 +0.8
903,411 - CCNA_00837 0.18 +4.6
903,436 - CCNA_00837 0.19 +1.3
903,447 - CCNA_00837 0.20 -1.5
903,447 - CCNA_00837 0.20 +1.9
903,447 - CCNA_00837 0.20 -1.0
903,447 - CCNA_00837 0.20 -0.2
903,447 - CCNA_00837 0.20 -1.4
903,464 + CCNA_00837 0.21 +0.2
903,471 - CCNA_00837 0.22 -0.8
903,552 + CCNA_00837 0.27 +0.6
903,555 - CCNA_00837 0.27 +0.2
903,593 + CCNA_00837 0.29 -2.2
903,616 + CCNA_00837 0.30 -1.0
903,658 - CCNA_00837 0.33 -0.9
903,672 + CCNA_00837 0.34 +0.4
903,672 + CCNA_00837 0.34 +0.6
903,679 - CCNA_00837 0.34 +0.4
903,690 - CCNA_00837 0.35 +1.3
903,694 + CCNA_00837 0.35 -1.1
903,761 + -0.0
903,797 + CCNA_00837 0.42 -0.8
903,805 - CCNA_00837 0.42 -1.7
903,807 - CCNA_00837 0.42 -2.4
903,809 + CCNA_00837 0.42 -1.0
903,839 + CCNA_00837 0.44 -1.8
903,883 + CCNA_00837 0.47 +1.6
903,957 - CCNA_00837 0.52 +1.2
903,967 + CCNA_00837 0.52 +0.1
903,978 + CCNA_00837 0.53 -2.3

Or see this region's nucleotide sequence