Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00436

Experiment: PYE 4C survival rep3 28 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00435 and CCNA_00436 are separated by 109 nucleotidesCCNA_00436 and CCNA_00437 are separated by 198 nucleotides CCNA_00435: CCNA_00435 - L-proline transporter (from data), at 440,156 to 441,607 _00435 CCNA_00436: CCNA_00436 - acyl-CoA dehydrogenase, short-chain specific, at 441,717 to 442,865 _00436 CCNA_00437: CCNA_00437 - methyl-accepting chemotaxis protein, at 443,064 to 444,677 _00437 Position (kb) 441 442 443Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 440.717 kb on + strand, within CCNA_00435at 440.718 kb on - strand, within CCNA_00435at 440.725 kb on - strand, within CCNA_00435at 440.725 kb on - strand, within CCNA_00435at 440.725 kb on - strand, within CCNA_00435at 440.725 kb on - strand, within CCNA_00435at 440.764 kb on + strand, within CCNA_00435at 440.764 kb on - strand, within CCNA_00435at 440.791 kb on + strand, within CCNA_00435at 440.791 kb on + strand, within CCNA_00435at 440.791 kb on + strand, within CCNA_00435at 440.799 kb on - strand, within CCNA_00435at 440.836 kb on - strand, within CCNA_00435at 440.853 kb on + strand, within CCNA_00435at 440.860 kb on + strand, within CCNA_00435at 440.918 kb on + strand, within CCNA_00435at 440.936 kb on - strand, within CCNA_00435at 441.031 kb on - strand, within CCNA_00435at 441.057 kb on - strand, within CCNA_00435at 441.061 kb on + strand, within CCNA_00435at 441.091 kb on - strand, within CCNA_00435at 441.091 kb on - strand, within CCNA_00435at 441.093 kb on + strand, within CCNA_00435at 441.101 kb on - strand, within CCNA_00435at 441.103 kb on + strand, within CCNA_00435at 441.125 kb on + strand, within CCNA_00435at 441.143 kb on + strand, within CCNA_00435at 441.158 kb on + strand, within CCNA_00435at 441.166 kb on - strand, within CCNA_00435at 441.231 kb on + strand, within CCNA_00435at 441.285 kb on - strand, within CCNA_00435at 441.320 kb on + strand, within CCNA_00435at 441.330 kb on + strand, within CCNA_00435at 441.330 kb on + strand, within CCNA_00435at 441.335 kb on + strand, within CCNA_00435at 441.338 kb on - strand, within CCNA_00435at 441.343 kb on - strand, within CCNA_00435at 441.346 kb on + strand, within CCNA_00435at 441.356 kb on + strand, within CCNA_00435at 441.366 kb on - strand, within CCNA_00435at 441.384 kb on + strand, within CCNA_00435at 441.424 kb on + strand, within CCNA_00435at 441.427 kb on + strand, within CCNA_00435at 441.427 kb on + strand, within CCNA_00435at 441.434 kb on + strand, within CCNA_00435at 441.434 kb on + strand, within CCNA_00435at 441.435 kb on - strand, within CCNA_00435at 441.475 kb on - strandat 441.475 kb on - strandat 441.477 kb on + strandat 441.477 kb on + strandat 441.477 kb on + strandat 441.478 kb on + strandat 441.485 kb on - strandat 441.485 kb on - strandat 441.489 kb on + strandat 441.489 kb on + strandat 441.490 kb on + strandat 441.493 kb on + strandat 441.499 kb on + strandat 441.514 kb on + strandat 441.514 kb on + strandat 441.522 kb on - strandat 441.523 kb on + strandat 441.533 kb on + strandat 441.536 kb on - strandat 441.543 kb on - strandat 441.559 kb on + strandat 441.559 kb on + strandat 441.567 kb on - strandat 441.567 kb on - strandat 441.571 kb on + strandat 441.631 kb on - strandat 441.631 kb on - strandat 441.642 kb on - strandat 441.683 kb on + strandat 441.812 kb on + strandat 441.845 kb on + strand, within CCNA_00436at 441.845 kb on + strand, within CCNA_00436at 441.845 kb on + strand, within CCNA_00436at 441.853 kb on + strand, within CCNA_00436at 441.861 kb on - strand, within CCNA_00436at 441.861 kb on - strand, within CCNA_00436at 441.862 kb on + strand, within CCNA_00436at 441.877 kb on + strand, within CCNA_00436at 441.885 kb on - strand, within CCNA_00436at 441.900 kb on + strand, within CCNA_00436at 441.900 kb on + strand, within CCNA_00436at 441.900 kb on + strand, within CCNA_00436at 441.900 kb on + strand, within CCNA_00436at 441.903 kb on - strand, within CCNA_00436at 441.908 kb on - strand, within CCNA_00436at 441.908 kb on - strand, within CCNA_00436at 441.931 kb on + strand, within CCNA_00436at 441.931 kb on + strand, within CCNA_00436at 441.931 kb on + strand, within CCNA_00436at 441.941 kb on + strand, within CCNA_00436at 441.944 kb on - strand, within CCNA_00436at 442.005 kb on + strand, within CCNA_00436at 442.034 kb on + strand, within CCNA_00436at 442.042 kb on - strand, within CCNA_00436at 442.076 kb on - strand, within CCNA_00436at 442.104 kb on + strand, within CCNA_00436at 442.112 kb on - strand, within CCNA_00436at 442.122 kb on + strand, within CCNA_00436at 442.137 kb on + strand, within CCNA_00436at 442.153 kb on + strand, within CCNA_00436at 442.158 kb on + strand, within CCNA_00436at 442.158 kb on + strand, within CCNA_00436at 442.168 kb on + strand, within CCNA_00436at 442.215 kb on + strand, within CCNA_00436at 442.216 kb on - strand, within CCNA_00436at 442.216 kb on - strand, within CCNA_00436at 442.256 kb on + strand, within CCNA_00436at 442.265 kb on - strand, within CCNA_00436at 442.267 kb on + strand, within CCNA_00436at 442.301 kb on + strand, within CCNA_00436at 442.323 kb on + strand, within CCNA_00436at 442.331 kb on - strand, within CCNA_00436at 442.340 kb on + strand, within CCNA_00436at 442.340 kb on + strand, within CCNA_00436at 442.389 kb on - strand, within CCNA_00436at 442.408 kb on + strand, within CCNA_00436at 442.408 kb on - strand, within CCNA_00436at 442.422 kb on + strand, within CCNA_00436at 442.428 kb on + strand, within CCNA_00436at 442.455 kb on + strand, within CCNA_00436at 442.470 kb on + strand, within CCNA_00436at 442.476 kb on + strand, within CCNA_00436at 442.488 kb on + strand, within CCNA_00436at 442.503 kb on + strand, within CCNA_00436at 442.554 kb on - strand, within CCNA_00436at 442.577 kb on + strand, within CCNA_00436at 442.613 kb on + strand, within CCNA_00436at 442.619 kb on - strand, within CCNA_00436at 442.669 kb on + strand, within CCNA_00436at 442.669 kb on + strand, within CCNA_00436at 442.669 kb on + strand, within CCNA_00436at 442.677 kb on - strand, within CCNA_00436at 442.677 kb on - strand, within CCNA_00436at 442.677 kb on - strand, within CCNA_00436at 442.712 kb on - strand, within CCNA_00436at 442.719 kb on + strand, within CCNA_00436at 442.719 kb on + strand, within CCNA_00436at 442.719 kb on + strand, within CCNA_00436at 442.719 kb on + strand, within CCNA_00436at 442.719 kb on + strandat 442.719 kb on + strand, within CCNA_00436at 442.719 kb on + strand, within CCNA_00436at 442.719 kb on + strand, within CCNA_00436at 442.727 kb on - strand, within CCNA_00436at 442.727 kb on - strand, within CCNA_00436at 442.727 kb on - strand, within CCNA_00436at 442.759 kb on + strandat 442.780 kb on - strandat 442.782 kb on - strandat 442.816 kb on + strandat 442.866 kb on + strandat 442.866 kb on + strandat 442.874 kb on - strandat 442.876 kb on + strandat 442.936 kb on + strandat 442.962 kb on - strandat 442.971 kb on - strandat 443.032 kb on - strandat 443.038 kb on - strandat 443.087 kb on - strandat 443.169 kb on - strandat 443.169 kb on - strandat 443.180 kb on + strandat 443.210 kb on + strandat 443.218 kb on - strandat 443.218 kb on - strandat 443.257 kb on - strand, within CCNA_00437at 443.305 kb on + strand, within CCNA_00437at 443.310 kb on + strand, within CCNA_00437at 443.310 kb on + strand, within CCNA_00437at 443.315 kb on + strand, within CCNA_00437at 443.315 kb on + strand, within CCNA_00437at 443.315 kb on + strand, within CCNA_00437at 443.318 kb on - strand, within CCNA_00437at 443.334 kb on - strand, within CCNA_00437at 443.348 kb on - strand, within CCNA_00437at 443.352 kb on + strand, within CCNA_00437at 443.360 kb on - strand, within CCNA_00437at 443.366 kb on - strand, within CCNA_00437at 443.367 kb on - strand, within CCNA_00437at 443.374 kb on + strand, within CCNA_00437at 443.374 kb on + strand, within CCNA_00437at 443.382 kb on - strand, within CCNA_00437at 443.382 kb on - strand, within CCNA_00437at 443.382 kb on - strand, within CCNA_00437at 443.382 kb on - strand, within CCNA_00437at 443.382 kb on - strand, within CCNA_00437at 443.426 kb on + strand, within CCNA_00437at 443.451 kb on - strand, within CCNA_00437at 443.453 kb on + strand, within CCNA_00437at 443.456 kb on - strand, within CCNA_00437at 443.461 kb on - strand, within CCNA_00437at 443.461 kb on - strand, within CCNA_00437at 443.468 kb on + strand, within CCNA_00437at 443.476 kb on - strand, within CCNA_00437at 443.487 kb on - strand, within CCNA_00437at 443.487 kb on - strand, within CCNA_00437at 443.493 kb on + strand, within CCNA_00437at 443.521 kb on - strand, within CCNA_00437at 443.540 kb on - strand, within CCNA_00437at 443.565 kb on + strand, within CCNA_00437at 443.588 kb on + strand, within CCNA_00437at 443.594 kb on - strand, within CCNA_00437at 443.596 kb on - strand, within CCNA_00437at 443.619 kb on + strand, within CCNA_00437at 443.627 kb on - strand, within CCNA_00437at 443.631 kb on + strand, within CCNA_00437at 443.632 kb on + strand, within CCNA_00437at 443.638 kb on - strand, within CCNA_00437at 443.648 kb on - strand, within CCNA_00437at 443.652 kb on + strand, within CCNA_00437at 443.660 kb on - strand, within CCNA_00437at 443.660 kb on - strand, within CCNA_00437at 443.702 kb on + strand, within CCNA_00437at 443.715 kb on + strand, within CCNA_00437at 443.723 kb on + strand, within CCNA_00437at 443.731 kb on - strand, within CCNA_00437at 443.731 kb on - strand, within CCNA_00437at 443.731 kb on - strand, within CCNA_00437at 443.734 kb on + strand, within CCNA_00437at 443.741 kb on - strandat 443.741 kb on - strand, within CCNA_00437at 443.814 kb on + strand, within CCNA_00437at 443.814 kb on + strand, within CCNA_00437at 443.814 kb on + strand, within CCNA_00437at 443.814 kb on + strand, within CCNA_00437at 443.827 kb on - strand, within CCNA_00437at 443.832 kb on + strand, within CCNA_00437at 443.864 kb on - strand, within CCNA_00437

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE 4C survival rep3 28 days
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440,717 + CCNA_00435 0.39 -1.1
440,718 - CCNA_00435 0.39 -0.9
440,725 - CCNA_00435 0.39 -1.5
440,725 - CCNA_00435 0.39 +2.6
440,725 - CCNA_00435 0.39 -2.1
440,725 - CCNA_00435 0.39 -2.0
440,764 + CCNA_00435 0.42 +2.0
440,764 - CCNA_00435 0.42 -0.2
440,791 + CCNA_00435 0.44 +0.1
440,791 + CCNA_00435 0.44 +0.3
440,791 + CCNA_00435 0.44 -3.4
440,799 - CCNA_00435 0.44 -0.6
440,836 - CCNA_00435 0.47 +1.8
440,853 + CCNA_00435 0.48 -2.4
440,860 + CCNA_00435 0.48 +1.7
440,918 + CCNA_00435 0.52 -1.1
440,936 - CCNA_00435 0.54 -2.4
441,031 - CCNA_00435 0.60 -2.4
441,057 - CCNA_00435 0.62 +0.1
441,061 + CCNA_00435 0.62 +1.0
441,091 - CCNA_00435 0.64 -1.3
441,091 - CCNA_00435 0.64 -0.2
441,093 + CCNA_00435 0.65 +1.6
441,101 - CCNA_00435 0.65 -0.9
441,103 + CCNA_00435 0.65 -0.3
441,125 + CCNA_00435 0.67 -1.8
441,143 + CCNA_00435 0.68 -1.9
441,158 + CCNA_00435 0.69 +0.7
441,166 - CCNA_00435 0.70 +0.1
441,231 + CCNA_00435 0.74 -1.1
441,285 - CCNA_00435 0.78 +0.3
441,320 + CCNA_00435 0.80 -1.7
441,330 + CCNA_00435 0.81 -0.4
441,330 + CCNA_00435 0.81 +1.5
441,335 + CCNA_00435 0.81 -0.8
441,338 - CCNA_00435 0.81 +0.5
441,343 - CCNA_00435 0.82 -2.2
441,346 + CCNA_00435 0.82 +0.4
441,356 + CCNA_00435 0.83 -0.2
441,366 - CCNA_00435 0.83 -0.5
441,384 + CCNA_00435 0.85 +0.9
441,424 + CCNA_00435 0.87 +1.3
441,427 + CCNA_00435 0.88 +0.8
441,427 + CCNA_00435 0.88 -1.5
441,434 + CCNA_00435 0.88 -1.4
441,434 + CCNA_00435 0.88 +0.0
441,435 - CCNA_00435 0.88 +0.1
441,475 - -0.8
441,475 - -0.2
441,477 + +0.4
441,477 + -1.9
441,477 + -1.0
441,478 + +1.7
441,485 - -1.7
441,485 - -1.5
441,489 + -0.8
441,489 + -2.6
441,490 + -0.4
441,493 + -1.8
441,499 + +0.1
441,514 + +0.4
441,514 + -1.6
441,522 - -1.6
441,523 + +1.4
441,533 + +0.9
441,536 - +0.4
441,543 - +0.4
441,559 + +0.7
441,559 + +0.4
441,567 - -0.2
441,567 - -0.3
441,571 + -2.5
441,631 - -0.4
441,631 - -0.8
441,642 - -1.3
441,683 + -0.1
441,812 + -1.5
441,845 + CCNA_00436 0.11 +0.3
441,845 + CCNA_00436 0.11 +0.2
441,845 + CCNA_00436 0.11 +0.9
441,853 + CCNA_00436 0.12 +0.5
441,861 - CCNA_00436 0.13 -0.5
441,861 - CCNA_00436 0.13 -1.7
441,862 + CCNA_00436 0.13 -0.5
441,877 + CCNA_00436 0.14 +1.1
441,885 - CCNA_00436 0.15 +0.8
441,900 + CCNA_00436 0.16 +2.1
441,900 + CCNA_00436 0.16 -0.4
441,900 + CCNA_00436 0.16 -0.7
441,900 + CCNA_00436 0.16 +0.8
441,903 - CCNA_00436 0.16 -1.7
441,908 - CCNA_00436 0.17 -0.2
441,908 - CCNA_00436 0.17 -2.9
441,931 + CCNA_00436 0.19 +0.9
441,931 + CCNA_00436 0.19 -0.1
441,931 + CCNA_00436 0.19 +0.9
441,941 + CCNA_00436 0.19 -0.9
441,944 - CCNA_00436 0.20 +0.7
442,005 + CCNA_00436 0.25 +1.9
442,034 + CCNA_00436 0.28 +0.4
442,042 - CCNA_00436 0.28 -1.9
442,076 - CCNA_00436 0.31 -0.3
442,104 + CCNA_00436 0.34 +1.4
442,112 - CCNA_00436 0.34 -1.5
442,122 + CCNA_00436 0.35 -1.6
442,137 + CCNA_00436 0.37 -1.2
442,153 + CCNA_00436 0.38 +0.1
442,158 + CCNA_00436 0.38 -1.6
442,158 + CCNA_00436 0.38 +0.1
442,168 + CCNA_00436 0.39 -0.5
442,215 + CCNA_00436 0.43 -3.1
442,216 - CCNA_00436 0.43 +2.0
442,216 - CCNA_00436 0.43 +0.0
442,256 + CCNA_00436 0.47 -2.6
442,265 - CCNA_00436 0.48 -1.1
442,267 + CCNA_00436 0.48 +0.8
442,301 + CCNA_00436 0.51 -0.4
442,323 + CCNA_00436 0.53 -1.0
442,331 - CCNA_00436 0.53 +0.5
442,340 + CCNA_00436 0.54 +1.1
442,340 + CCNA_00436 0.54 -1.2
442,389 - CCNA_00436 0.58 -0.3
442,408 + CCNA_00436 0.60 -0.7
442,408 - CCNA_00436 0.60 +1.0
442,422 + CCNA_00436 0.61 -0.9
442,428 + CCNA_00436 0.62 +0.1
442,455 + CCNA_00436 0.64 +0.5
442,470 + CCNA_00436 0.66 +0.1
442,476 + CCNA_00436 0.66 -2.2
442,488 + CCNA_00436 0.67 +0.1
442,503 + CCNA_00436 0.68 -0.9
442,554 - CCNA_00436 0.73 +1.4
442,577 + CCNA_00436 0.75 -0.2
442,613 + CCNA_00436 0.78 +0.1
442,619 - CCNA_00436 0.79 -1.2
442,669 + CCNA_00436 0.83 -2.2
442,669 + CCNA_00436 0.83 +0.8
442,669 + CCNA_00436 0.83 -1.4
442,677 - CCNA_00436 0.84 -0.4
442,677 - CCNA_00436 0.84 -4.1
442,677 - CCNA_00436 0.84 +0.4
442,712 - CCNA_00436 0.87 +3.1
442,719 + CCNA_00436 0.87 +0.1
442,719 + CCNA_00436 0.87 -0.4
442,719 + CCNA_00436 0.87 -2.3
442,719 + CCNA_00436 0.87 -2.4
442,719 + +1.1
442,719 + CCNA_00436 0.87 +1.2
442,719 + CCNA_00436 0.87 +2.4
442,719 + CCNA_00436 0.87 -3.4
442,727 - CCNA_00436 0.88 -2.7
442,727 - CCNA_00436 0.88 -1.9
442,727 - CCNA_00436 0.88 -1.5
442,759 + -0.4
442,780 - +0.4
442,782 - -2.1
442,816 + +1.6
442,866 + +1.4
442,866 + +0.1
442,874 - -1.5
442,876 + -0.5
442,936 + -1.2
442,962 - +0.4
442,971 - -1.4
443,032 - -1.8
443,038 - -0.9
443,087 - +2.4
443,169 - -2.5
443,169 - -1.1
443,180 + -1.2
443,210 + +0.1
443,218 - +0.1
443,218 - -0.6
443,257 - CCNA_00437 0.12 -1.2
443,305 + CCNA_00437 0.15 -1.6
443,310 + CCNA_00437 0.15 +2.4
443,310 + CCNA_00437 0.15 -0.6
443,315 + CCNA_00437 0.16 -3.1
443,315 + CCNA_00437 0.16 -3.2
443,315 + CCNA_00437 0.16 -1.3
443,318 - CCNA_00437 0.16 -1.6
443,334 - CCNA_00437 0.17 +0.7
443,348 - CCNA_00437 0.18 -0.6
443,352 + CCNA_00437 0.18 +0.1
443,360 - CCNA_00437 0.18 -1.2
443,366 - CCNA_00437 0.19 -1.9
443,367 - CCNA_00437 0.19 -0.8
443,374 + CCNA_00437 0.19 -1.3
443,374 + CCNA_00437 0.19 -0.9
443,382 - CCNA_00437 0.20 +0.3
443,382 - CCNA_00437 0.20 +1.4
443,382 - CCNA_00437 0.20 -1.2
443,382 - CCNA_00437 0.20 -0.6
443,382 - CCNA_00437 0.20 -3.3
443,426 + CCNA_00437 0.22 +0.8
443,451 - CCNA_00437 0.24 -2.2
443,453 + CCNA_00437 0.24 -0.2
443,456 - CCNA_00437 0.24 -0.8
443,461 - CCNA_00437 0.25 -1.4
443,461 - CCNA_00437 0.25 -0.3
443,468 + CCNA_00437 0.25 -3.6
443,476 - CCNA_00437 0.26 -2.2
443,487 - CCNA_00437 0.26 -0.8
443,487 - CCNA_00437 0.26 -1.3
443,493 + CCNA_00437 0.27 -0.5
443,521 - CCNA_00437 0.28 -0.9
443,540 - CCNA_00437 0.29 +0.8
443,565 + CCNA_00437 0.31 +0.8
443,588 + CCNA_00437 0.32 -2.1
443,594 - CCNA_00437 0.33 +2.4
443,596 - CCNA_00437 0.33 +0.1
443,619 + CCNA_00437 0.34 +0.6
443,627 - CCNA_00437 0.35 -0.6
443,631 + CCNA_00437 0.35 +1.1
443,632 + CCNA_00437 0.35 -0.2
443,638 - CCNA_00437 0.36 -1.2
443,648 - CCNA_00437 0.36 +4.7
443,652 + CCNA_00437 0.36 -2.0
443,660 - CCNA_00437 0.37 -1.3
443,660 - CCNA_00437 0.37 +1.4
443,702 + CCNA_00437 0.40 -1.7
443,715 + CCNA_00437 0.40 -0.1
443,723 + CCNA_00437 0.41 +0.5
443,731 - CCNA_00437 0.41 -2.2
443,731 - CCNA_00437 0.41 -1.3
443,731 - CCNA_00437 0.41 +0.1
443,734 + CCNA_00437 0.42 -0.8
443,741 - -0.2
443,741 - CCNA_00437 0.42 -0.2
443,814 + CCNA_00437 0.46 -0.3
443,814 + CCNA_00437 0.46 +0.9
443,814 + CCNA_00437 0.46 +0.8
443,814 + CCNA_00437 0.46 -0.3
443,827 - CCNA_00437 0.47 +0.6
443,832 + CCNA_00437 0.48 +0.0
443,864 - CCNA_00437 0.50 +4.4

Or see this region's nucleotide sequence