Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS23805 and BWI76_RS23810 are separated by 5 nucleotides BWI76_RS23810 and BWI76_RS23815 are separated by 22 nucleotides
BWI76_RS23805: BWI76_RS23805 - ssDNA exonuclease RecJ, at 4,969,297 to 4,971,030
_RS23805
BWI76_RS23810: BWI76_RS23810 - bifunctional protein-disulfide isomerase/oxidoreductase DsbC, at 4,971,036 to 4,971,749
_RS23810
BWI76_RS23815: BWI76_RS23815 - site-specific tyrosine recombinase XerD, at 4,971,772 to 4,972,668
_RS23815
Position (kb)
4971
4972 Strain fitness (log2 ratio)
-2
-1
0
1 at 4970.039 kb on - strand, within BWI76_RS23805 at 4970.088 kb on - strand, within BWI76_RS23805 at 4970.259 kb on - strand, within BWI76_RS23805 at 4970.285 kb on - strand, within BWI76_RS23805 at 4970.504 kb on - strand, within BWI76_RS23805 at 4970.575 kb on - strand, within BWI76_RS23805 at 4970.635 kb on - strand, within BWI76_RS23805 at 4970.820 kb on - strand, within BWI76_RS23805 at 4970.866 kb on + strand at 4970.879 kb on - strand at 4970.879 kb on - strand at 4971.158 kb on + strand, within BWI76_RS23810 at 4971.385 kb on - strand, within BWI76_RS23810 at 4971.469 kb on + strand at 4971.702 kb on + strand at 4971.711 kb on - strand at 4971.838 kb on - strand at 4971.856 kb on + strand at 4971.972 kb on + strand, within BWI76_RS23815 at 4972.185 kb on + strand, within BWI76_RS23815 at 4972.742 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,970,039 - BWI76_RS23805 0.43 -0.1 4,970,088 - BWI76_RS23805 0.46 +0.1 4,970,259 - BWI76_RS23805 0.55 -2.4 4,970,285 - BWI76_RS23805 0.57 +0.6 4,970,504 - BWI76_RS23805 0.70 -0.2 4,970,575 - BWI76_RS23805 0.74 -0.4 4,970,635 - BWI76_RS23805 0.77 +0.2 4,970,820 - BWI76_RS23805 0.88 +0.1 4,970,866 + -0.2 4,970,879 - -0.8 4,970,879 - -1.4 4,971,158 + BWI76_RS23810 0.17 +0.3 4,971,385 - BWI76_RS23810 0.49 +0.6 4,971,469 + -0.9 4,971,702 + +0.3 4,971,711 - +1.5 4,971,838 - -1.6 4,971,856 + -2.2 4,971,972 + BWI76_RS23815 0.22 -1.1 4,972,185 + BWI76_RS23815 0.46 -0.3 4,972,742 + +0.2
Or see this region's nucleotide sequence