Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19705

Experiment: LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS19695 and BWI76_RS19700 are separated by 95 nucleotidesBWI76_RS19700 and BWI76_RS19705 are separated by 1 nucleotidesBWI76_RS19705 and BWI76_RS19710 are separated by 32 nucleotides BWI76_RS19695: BWI76_RS19695 - membrane protein, at 4,116,302 to 4,117,351 _RS19695 BWI76_RS19700: BWI76_RS19700 - deoxyribonuclease IV, at 4,117,447 to 4,118,304 _RS19700 BWI76_RS19705: BWI76_RS19705 - kinase, at 4,118,306 to 4,119,394 _RS19705 BWI76_RS19710: BWI76_RS19710 - NupC/NupG family nucleoside CNT transporter, at 4,119,427 to 4,120,677 _RS19710 Position (kb) 4118 4119 4120Strain fitness (log2 ratio) -1 0 1at 4118.021 kb on + strand, within BWI76_RS19700at 4118.029 kb on - strand, within BWI76_RS19700at 4118.087 kb on + strand, within BWI76_RS19700at 4118.324 kb on - strandat 4118.511 kb on - strand, within BWI76_RS19705at 4118.776 kb on + strand, within BWI76_RS19705at 4118.876 kb on + strand, within BWI76_RS19705at 4118.918 kb on + strand, within BWI76_RS19705at 4119.258 kb on - strand, within BWI76_RS19705at 4119.258 kb on - strand, within BWI76_RS19705at 4119.470 kb on + strandat 4119.474 kb on - strandat 4119.744 kb on - strand, within BWI76_RS19710at 4119.813 kb on + strand, within BWI76_RS19710at 4120.020 kb on + strand, within BWI76_RS19710

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB
remove
4,118,021 + BWI76_RS19700 0.67 +0.8
4,118,029 - BWI76_RS19700 0.68 -1.5
4,118,087 + BWI76_RS19700 0.75 -0.8
4,118,324 - -1.7
4,118,511 - BWI76_RS19705 0.19 +0.4
4,118,776 + BWI76_RS19705 0.43 +1.7
4,118,876 + BWI76_RS19705 0.52 +0.5
4,118,918 + BWI76_RS19705 0.56 +1.0
4,119,258 - BWI76_RS19705 0.87 -0.7
4,119,258 - BWI76_RS19705 0.87 +0.8
4,119,470 + -0.2
4,119,474 - +0.0
4,119,744 - BWI76_RS19710 0.25 -0.3
4,119,813 + BWI76_RS19710 0.31 +0.0
4,120,020 + BWI76_RS19710 0.47 -0.3

Or see this region's nucleotide sequence