Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19570 and BWI76_RS19575 are separated by 8 nucleotides BWI76_RS19575 and BWI76_RS19580 are separated by 8 nucleotides BWI76_RS19580 and BWI76_RS19585 are separated by 24 nucleotides
BWI76_RS19570: BWI76_RS19570 - 3-hydroxybenzoate 6-hydroxylase, at 4,091,793 to 4,092,986
_RS19570
BWI76_RS19575: BWI76_RS19575 - maleylacetoacetate isomerase, at 4,092,995 to 4,093,639
_RS19575
BWI76_RS19580: BWI76_RS19580 - FAA-hydrolase, at 4,093,648 to 4,094,346
_RS19580
BWI76_RS19585: BWI76_RS19585 - gentisate 1,2-dioxygenase, at 4,094,371 to 4,095,408
_RS19585
Position (kb) 4093
4094
4095 Strain fitness (log2 ratio) -1
0
1 at 4092.705 kb on + strand, within BWI76_RS19570 at 4092.977 kb on + strand at 4093.080 kb on - strand, within BWI76_RS19575 at 4093.158 kb on - strand, within BWI76_RS19575 at 4093.886 kb on - strand, within BWI76_RS19580 at 4093.996 kb on + strand, within BWI76_RS19580 at 4094.384 kb on + strand at 4094.384 kb on + strand at 4094.553 kb on - strand, within BWI76_RS19585 at 4094.733 kb on - strand, within BWI76_RS19585 at 4094.905 kb on - strand, within BWI76_RS19585
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,092,705 + BWI76_RS19570 0.76 +0.6 4,092,977 + -0.4 4,093,080 - BWI76_RS19575 0.13 +0.1 4,093,158 - BWI76_RS19575 0.25 -0.4 4,093,886 - BWI76_RS19580 0.34 -0.8 4,093,996 + BWI76_RS19580 0.50 -0.6 4,094,384 + -0.0 4,094,384 + +0.4 4,094,553 - BWI76_RS19585 0.18 -1.1 4,094,733 - BWI76_RS19585 0.35 +0.8 4,094,905 - BWI76_RS19585 0.51 +0.2
Or see this region's nucleotide sequence