Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17400

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17385 and BWI76_RS17390 are separated by 68 nucleotidesBWI76_RS17390 and BWI76_RS17395 are separated by 238 nucleotidesBWI76_RS17395 and BWI76_RS17400 are separated by 35 nucleotidesBWI76_RS17400 and BWI76_RS17405 are separated by 150 nucleotidesBWI76_RS17405 and BWI76_RS17410 are separated by 265 nucleotides BWI76_RS17385: BWI76_RS17385 - nitrate regulatory protein, at 3,607,936 to 3,609,126 _RS17385 BWI76_RS17390: BWI76_RS17390 - DsrE family protein, at 3,609,195 to 3,609,548 _RS17390 BWI76_RS17395: BWI76_RS17395 - hypothetical protein, at 3,609,787 to 3,610,029 _RS17395 BWI76_RS17400: BWI76_RS17400 - transporter, at 3,610,065 to 3,610,745 _RS17400 BWI76_RS17405: BWI76_RS17405 - cation transport regulator, at 3,610,896 to 3,611,126 _RS17405 BWI76_RS17410: BWI76_RS17410 - sodium-potassium/proton antiporter ChaA, at 3,611,392 to 3,612,492 _RS17410 Position (kb) 3610 3611Strain fitness (log2 ratio) -1 0 1at 3609.104 kb on - strandat 3609.104 kb on - strandat 3609.274 kb on + strand, within BWI76_RS17390at 3609.366 kb on + strand, within BWI76_RS17390at 3609.702 kb on + strandat 3609.702 kb on + strandat 3609.710 kb on - strandat 3610.493 kb on - strand, within BWI76_RS17400at 3611.016 kb on - strand, within BWI76_RS17405at 3611.016 kb on - strand, within BWI76_RS17405at 3611.082 kb on + strandat 3611.092 kb on + strand, within BWI76_RS17405at 3611.427 kb on + strandat 3611.437 kb on + strandat 3611.539 kb on + strand, within BWI76_RS17410at 3611.573 kb on + strand, within BWI76_RS17410

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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3,609,104 - -0.1
3,609,104 - +0.3
3,609,274 + BWI76_RS17390 0.22 +0.1
3,609,366 + BWI76_RS17390 0.48 -0.6
3,609,702 + +0.0
3,609,702 + -0.2
3,609,710 - -0.5
3,610,493 - BWI76_RS17400 0.63 +0.4
3,611,016 - BWI76_RS17405 0.52 +0.3
3,611,016 - BWI76_RS17405 0.52 -0.3
3,611,082 + +0.9
3,611,092 + BWI76_RS17405 0.85 -0.6
3,611,427 + +0.0
3,611,437 + -0.2
3,611,539 + BWI76_RS17410 0.13 +0.4
3,611,573 + BWI76_RS17410 0.16 +0.4

Or see this region's nucleotide sequence